@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0352: (2017-12-20 )
MVESFFGILKSEMFYGYEKTFKSLNQLEQAIIDYIDYYNNKRIKVKLKGLSPVQYRTKSFG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10........----20---.----......--..30........-40---.----.....-----------...50----------.-----........60----------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
-
S
F
F
G
I
L
K
S
E
M
F
Y
G
Y
E
K
----
T
----
F
----
K
S
L
N
Q
L
--
E
Q
A
I
I
D
Y
I
D
Y
YN-N----
K
----
R
I
K
V
K
-----------
L
KGL-----------S-----P
V
Q
Y
RTKSFG----------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
76.25
24%
45
- C2 -
-
2PTR
1
PUR8_ECOLI
A:
[1-459]
MELSSLTAVSPVDGRYGDKV
S
A
L
R
G
I
FS
E
Y
G
L
L
K
F
R
V
Q
V
E
V
R
W
L
Q
K
L
A
A
HAAIKEVPAFA
A
D
A
I
G
Y
L
D
A
I
V
A
S
FS
E
E
D
A
A
R
I
K
T
I
E
R
T
TNH
D
V
K
A
V
E
Y
F
L
K
E
K
V
AEI
P
E
L
H
A
V
SEFIHFACT
S
E
D
I
N
N
L
S
H
A
L
M
L
K
T
A
R
D
EV
I
L
P
Y
W
R
Q
L
I
D
G
L
K
D
L
A
V
Q
Y
R
DIPLLSRTAGQP
A
T
P
S
T
I
G
K
E
M
A
N
V
A
Y
R
M
E
R
Q
Y
R
Q
L
N
Q
V
E
I
L
G
K
I
N
G
AVGNY
N
A
H
I
A
A
Y
PEVD
W
H
Q
F
S
E
E
F
V
T
S
L
G
I
Q
W
N
PYTTQIEPH
D
Y
I
A
E
L
F
D
C
V
A
R
F
N
T
I
L
I
D
F
D
R
D
V
W
G
Y
I
A
L
NH
F
K
Q
K
T
I
A
GEIGSSTMPHKVNP
I
D
F
E
N
S
E
G
N
L
G
L
S
N
A
V
L
Q
H
L
A
S
K
L
P
VSRWQRDL
T
D
S
T
V
L
R
N
L
G
V
G
I
G
Y
A
L
I
A
Y
Q
S
T
L
K
G
V
S
K
LEVN
R
D
H
L
L
D
E
L
D
H
N
WEV
L
A
E
-
P
I
Q
T
V
M
R
R
---
Y
G
I
E
K
----
P
----
Y
----
E
K
L
K
E
L
VD
A
E
G
M
K
Q
F
I
D
G
L
A
L
P
----
E
----
E
E
K
A
R
-----------
L
K
A
M
-----------
T
-----
P
A
N
Y
I
G
R
A
I
T
M
V
D
E
LKHHH-------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
72.46
19%
-93
- C2 -
-
1BL3
-
C:
[102-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
-
S
M
N
K
E
L
K
K
I
I
G
Q
V
------------
R
----
D
Q
A
E
H
L
--
K
T
A
V
Q
M
A
V
F
I
H
N
-
H
---------
K
R
K
G
G
-----------
I
G
G
Y
-----------
S
-----
A
G
E
R
I
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
65.52
17%
-109
- C2 -
-
4PA1
-
A:
[153-204]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
-
N
V
N
H
T
L
K
V
W
I
Q
K
--------
F
----
L
----
P
E
T
T
S
L
--
D
N
A
L
S
L
A
V
H
S
L
N
-
F
---------
K
R
R
G
R
-----------
I
G
G
M
-----------
A
-----
P
Y
E
L
L
A
Q
-------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
65.22
22%
-137
- C2 -
-
2LVH
-
Y059A_AFV1Y
A:
[7-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
-
V
Y
Q
C
L
R
C
G
L
T
F
R
T
K
K
Q
----
L
----
I
----
R
H
L
V
N
T
--
E
K
V
N
P
L
S
I
D
Y
Y
----------------------------------------------------
Y
Q
S
F
S
V
-----------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
64.50
15%
0
- C- -
-
3F9K
-
PSIP1_HUMAN
k:
[152-203]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
-
A
M
N
H
H
L
K
N
Q
I
S
R
I
------------
R
----
E
Q
A
N
T
I
--
E
T
I
V
L
M
A
V
H
C
M
N
-
F
---------
K
R
R
G
G
-----------
I
G
D
M
-----------
T
-----
P
S
E
R
L
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
64.35
19%
-65
- C2 -
-
3L3U
-
POL_HV1N5
A:
[102-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
-
S
M
N
K
E
L
K
K
I
I
G
Q
V
------------
R
----
D
Q
A
E
H
L
--
K
T
A
V
Q
M
A
V
F
I
H
N
-
H
---------
K
R
K
G
G
-----------
I
G
G
Y
-----------
S
-----
A
G
E
R
I
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
64.14
19%
-67
- C2 -
-
3VQ6
-
?
A:
[97-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
-
S
M
N
K
E
L
K
K
I
I
G
Q
--------
V
----
R
----
D
Q
A
E
H
L
--
K
T
A
V
Q
M
A
V
F
I
H
N
-
H
---------
K
R
K
G
G
-----------
I
G
G
Y
-----------
S
-----
A
G
E
R
I
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
61.59
19%
11
- C2 -
-
2Q5W
1
MOAD_STAAN
D:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
-
L
Y
F
A
E
I
K
D
I
L
Q
K
A
Q
E
D
IVLE
Q
----
A
----
L
T
V
Q
Q
F
--
E
D
L
L
F
E
R
Y
P
Q
I
N
-
N
----
K
----
K
F
Q
V
A
VNEEFVQKSDF
I
Q
P
N
-----------
D
-----
T
V
A
L
I
P
P
V
S
G
G---------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
61.36
20%
-
- C2 -
-
3KXY
-
?
T:
[17-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TE
A
V
G
-
H
F
E
G
R
S
V
T
R
A
A
V
R
G
E
D
----
R
---------
S
S
V
A
G
L
--
A
R
W
L
A
R
N
V
A
--
G
-
D
----
P
----
R
S
E
Q
A
-----------
L
Q
R
L
-----------
A
DGDGT
P
L
E
A
R
T
V
R
R
R
----------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
61.24
14%
-31
- C2 -
-
1JW9
-
MOAD_ECOLI
D:
[1-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
L
F
F
A
Q
V
R
E
L
V
G
T
D
A
T
E
----
V
AAD-
F
----
P
T
V
E
A
L
--
R
Q
H
M
A
A
Q
S
D
R
W
A
-
L
ALED
G
----
K
L
L
A
A
-----------
V
N
Q
T
LVSFDHPLTDG
D
-----
E
V
A
F
F
P
P
V
T
G
G---------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
56.20
20%
-73
- C2 -
-
3KKR
-
A:
[95-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
-
R
A
H
R
D
L
K
D
R
L
A
A
Y
------------
Q
----
G
D
C
E
T
V
--
E
A
A
L
S
L
A
L
V
S
L
N
-
K
----
K
-----
R
-
G
G
-----------
I
G
G
H
-----------
T
-----
P
Y
E
I
Y
L
--------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
54.18
23%
82
- C2 -
-
1KBL
-
PPDK_CLOSY
A:
[1-375]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AKWVYKFEEGNASMRNLLG
G
K
G
C
N
L
A
E
M
T
I
L
GMPIP
Q
G
F
T
VT
T
E
A
C
T
E
Y
Y
N
S
GKQIT
Q
E
I
Q
D
Q
I
F
E
A
I
T
W
L
E
E
L
N
GKKFGDT
E
D
P
L
L
V
S
V
R
S
G
A
R
A
S
M
P
GM
M
D
T
I
L
NLGLN
D
V
A
V
E
G
F
A
K
K
T
GN
P
R
F
A
Y
D
S
Y
R
R
F
I
Q
M
Y
S
D
VVMEVPK
S
H
F
E
K
I
I
D
A
M
K
E
E
K
GVHFDTDLT
A
D
D
L
K
E
L
A
E
-
K
F
K
A
V
Y
K
E
A
M
-
N
G
E
E
F
----
P
----
Q
----
E
P
K
D
Q
L
--
M
G
A
V
K
A
V
F
R
S
W
D
-
N
----
P
----
R
A
I
V
Y
-----------
R
R
M
--------------------
N
D
I
P
G
D
W
G
T
A
V
N
V
Q
T
M
V
F
GNKGET
S
G
T
G
V
A
F
TRNPSTGEKGIYGEYLINAQ
G
E
D
V
V
A
GVRTPQPITQLENDM
P
D
C
Y
K
Q
F
M
D
L
A
M
K
L
E
K
H
F
R
D
M
Q
D
M
E
F
T
I
E
EG
K
L
Y
F
LQTRN
G
K
R
T
A
P
A
A
L
Q
I
A
C
D
L
V
D
E
GMIT
E
E
E
A
V
V
R
IEAKSLDQL
26
Fugue
53.15
11%
-50
- C2 -
-
1FM0
-
MOAD_ECOLI
D:
[1-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
-
V
L
F
F
A
Q
V
R
E
L
V
G
T
D
A
T
----
E
----
V
AADF
P
T
V
E
A
L
--
R
Q
H
M
A
A
Q
S
D
R
W
A
-
L
----
A
LEDG
K
L
L
A
A
-----------
V
N
Q
T
-----------
L
-----
V
S
F
D
H
P
L
T
D
G
DEVAFFPPVTGG----------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
52.85
20%
-80
- C2 -
-
3KKS
1
B:
[95-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
-
R
A
H
R
D
L
K
D
R
L
A
A
Y
------------
Q
----
G
D
C
E
T
V
--
E
A
A
L
S
L
A
L
V
S
L
N
-
K
----
K
-----
R
-
G
G
-----------
I
G
G
H
-----------
T
-----
P
Y
E
I
Y
L
--------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
49.78
13%
-
- C2 -
-
4FW1
-
B:
[156-213]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
C
-
R
A
N
R
L
L
K
D
K
I
R
V
L
A
E
G
----
D
GFMK
R
----
I
P
T
S
K
Q
--
G
E
L
L
A
K
A
M
Y
A
L
N
-
H
---------
K
E
R
G
E
-----------
N
T
-
K
-----------
T
-----
P
I
Q
K
H
W
--------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
49.02
13%
-
- C2 -
-
4FW1
-
POL_RSVP
A:
[156-213]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
C
-
R
A
N
R
L
L
K
D
K
I
R
V
L
A
E
G
----
D
GFMK
R
----
I
P
T
S
K
Q
--
G
E
L
L
A
K
A
M
Y
A
L
N
-
H
---------
K
E
R
G
E
-----------
N
T
-
K
-----------
T
-----
P
I
Q
K
H
W
--------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
48.74
26%
-82
* C2 *
-
4UPU
-
B:
[8-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
H
W
Q
-
K
----
I
----
R
T
M
V
N
-----------
L
P
V
I
-----------
S
-----
P
F
K
-----------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
48.37
23%
128
- C2 -
-
5J9T
-
EAF6_YEAST
B:
[1-109]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
D
E
L
K
S
Y
E
-
A
L
K
A
E
L
K
K
S
L
Q
D
R
R
E
Q
----
E
---------
D
T
F
D
N
L
--
Q
Q
E
I
Y
D
K
E
T
E
Y
F
-
S
----
S
----
G
N
I
I
K
GFDAFNNNDR-
I
F
S
L
-----------
S
-----
S
A
T
Y
V
K
Q
Q
H
G
Q---------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
47.72
17%
-92
- C2 -
-
1W09
-
AHSP_HUMAN
A:
[31-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
V
S
E
E
D
M
--
V
T
V
V
E
D
W
M
N
F
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
43.86
7%
-87
- C2 -
-
4U7B
-
MOS1T_DROMA
A:
[280-324]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
Y
H
L
F
A
S
M
G
H
A
L
A
E
---
Q
----
R
----
F
----
D
S
Y
E
S
V
--
K
K
W
L
D
E
W
F
A
A
K
D
-
D
----
E
----
F
Y
W
R
G
-----------
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------