@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0558: (2017-12-24 )
MRILSVASTERSSRMIKLWRRYKPFINAGVQELITYRVNFILYRIGDVMGAFVAFYLWKAVFDSSQESLIQGFSMADITLYIIMSFVTNLLTRSDSSFMIGEEVKDGSIIMRLLRPVHFAASYLFTELGSKWLIFISVGLPFLSVIVLMKIISGQGIVEVLGLTVLYLFSLTLAYLINFFFNICFGFSAFVFKNLWGSNLLKTSIVAFMSGSLIPLAFFPKVVSDILSFLPFSSLIYTPVMIIVGKYDASQILQALLLQFFWLLVMVGLSQLIWKRVQSFITIQGG
Atome Classification :
(16 SA)
-----.........10.....-----...20---.........30--........40..--......50........60.....------...70........80---.......----------------..90----.--.......-100..---------.....110......------------.-120......--.130.-........140---------.......-150..---------------.....160----...---------....170.......180-.......190...-----....200.-----------------------......-210..---------......220.-----.....-.230.......240-----...----------......250------------------------------.----........260----.......270----------------------.....-..280--------.....-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----
M
R
I
L
S
VAS
T
E
R
S
S
R
M
I
-----
K
L
W
R
----RY
K
P
F
I
N
A
G
V
Q
--
E
L
I
T
Y
R
V
N
F
I
L
Y
--
R
I
G
D
V
M
G
A
F
V
A
F
Y
L
W
K
A
V
FDS
S
Q
------
E
S
L
I
Q
GFS
M
A
D
I
T
L
----
Y
I
I
M
S
F
V
----------------
T
N
L
L----T--RSDSS
F
M
-
I
GEEV---------K
D
G
S
I
I
M
R
L
L
R
P
V
H
------------
F
-
A
A
S
Y
L
F
T
E
L--GS--
K
-
W
L
I
F
I
SV
G
L
P
F
---------
L
S
V
I
V
L
M
-
K
I
ISG---------------
Q
G
I
V
E
V
L
G
----
L
T
V
---------
L
Y
L
F
S
L
T
L
A
Y
L
I
N
F
F
F
N
-
I
C
F
G
F
S
A
F
V
F
K
N
L
-----WGS
N
L
L
K
T
-----------------------
S
I
V
A
F
M-SG-SL---------
I
P
L
A
F
F
P
K
V
V
-----
S
D
I
L
S
-FL
P
F
S
S
L
I
Y
T
P
V
-------
M
I
I
----------
V
GKY
D
A
S
--------------------------------
Q
----
I
L
Q
A
L
L
L
Q
F
F
W
----
L
L
V
M
V
G
L
S
Q
L
----------------------
I
W
K
R
V
-
Q
S
F
I
---------
T
IQGG-----------------------------------
13
Fugue
79.01
18%
-
- C2 -
-
3EB8
-
VIRA_SHIFL
A:
[53-399]
--------------
A
E
K
H
S
E
K
-----
K
L
M
D
----
S
F
S
P
S
L
S
Q
D
K
M
DG
E
F
A
H
A
N
I
D
G
I
S
I
--
R
L
C
L
N
K
G
I
C
S
V
F
Y
L
D
G
D
K
I
Q
S
T
Q
L
S
S
K
E
Y
N
N
L
L
S
S
L
P
P
K
Q
F
N
L
G
K
V
H
T
I
T
A
P
V
S
----------------
G
N
F
K
----
T
--
H
K
P
A
P
E
V
-
I
E
T
A
I
---------
N
C
C
T
S
I
I
P
N
D
D
Y
F
H
VKDTDFNS
V
W
H
D
I
-
Y
R
D
I
R
A
S
D
S
--
N
S
--
T
-
K
I
Y
F
N
N
I
E
I
P
------------
L
K
L
I
A
-
D
L
I
N
E
---------------
L
G
I
N
E
F
I
D
SK
K
E
L
Q
M
---------
L
S
Y
N
Q
V
N
K
I
I
N
S
N
F
P
Q
Q
D
L
C
F
Q
T
E
K
L
L
F
T
S
L
-----
F
Q
D
P
A
F
I
S
-----------------------
A
L
T
S
A
F
-
W
Q
-
S
L
HITS
S
S
V
E
H
I
Y
A
Q
I
M
S
E
N
I
-----
E
N
R
L
N
-
F
M
P
E
Q
R
V
I
N
N
C
G
-------
H
I
I
----------
K
I
N
A
V
R
A
--------------------------------
Y
----
E
V
S
S
S
I
L
P
S
H
I
----
T
C
N
G
V
G
I
N
K
I
E
T
S
Y
L
V
H
AGTLPS
S
E
G
L
R
N
A
I
P
P
E
S
R
Q
-
V
S
F
A
---------
I
I
S
P
D
-----------------------------------
3
HHSearch
53.80
10%
-165
- C3 -
-
5DO7
-
ABCG5_HUMAN
A:
[361-650]
-------------------
S
P
-----
G
V
F
S
----
K
L
G
V
L
L
R
R
V
T
R
--
N
L
V
R
N
K
L
A
V
I
T
R
--
L
L
Q
N
----
L
I
M
G
L
F
L
L
F
F
V
L
R
V
R
------
S
-
N
V
L
K
--
G
A
I
Q
D
R
----
V
G
L
L
Y
Q
F
----------------
V
G
A
T
----
P
Y
T
G
M
L
N
A
V
N
-
L
F
P
V
L
---------
R
A
V
S
D
Q
E
S
Q
D
G
L
Y
Q
------------
K
-
W
Q
M
M
L
A
Y
A
L
--
H
V
--
L
-
P
F
S
V
V
A
T
M
I
-
F
---------
S
S
V
C
Y
W
T
-
L
---
G
----------------
L
H
-
P
E
V
A
----
R
F
G
---------
Y
F
S
A
A
L
L
A
P
H
L
I
G
E
F
L
T
-
L
V
L
L
G
I
V
Q
N
P
N
I
V
-----
N
S
V
V
A
L
L
S
-----------------------
I
A
G
V
L
V
G
S
G
-
F
L
---------
R
N
I
Q
E
M
P
I
P
F
-----
K
I
I
S
Y
-
F
T
F
Q
K
Y
C
S
E
I
L
V
-------
V
N
E
----------
F
Y
G
L
N
F
T
CAFTQ
G
I
Q
F
I
E
K
TCPGATS-------------
R
----
F
T
M
N
F
L
I
L
Y
S
F
----
I
P
A
L
V
I
L
G
I
V
----------------------
V
F
K
I
R
-
D
H
L
I
---------
S
---------------------------------------
16
Fugue
52.48
17%
-64
- C1 -
-
4X8E
9
EGTB_MYCT3
A:
[8-435]
PH
R
A
E
L
A
R
Q
L
I
D
A
R
N
R
T
L
R
L
V
DFD
D
A
E
L
R
R
----
Q
Y
D
P
L
M
S
P
L
V
W
--
D
L
A
H
I
G
Q
Q
E
E
L
W
L
L
R
G
G
D
P
R
R
P
G
L
L
E
P
A
V
E
Q
L
Y
D
A
F
V
------
H
P
R
A
S
R
V
H
L
P
L
L
S
P
----
A
Q
A
R
R
F
C
----------------
A
T
V
R
----
S
--
A
V
L
D
A
L
D
R
L
P
E
D
A
---------
D
T
F
A
F
G
M
V
V
S
H
E
H
Q
------------
H
-
D
E
T
M
L
Q
A
L
N
--
L
R
--
S
-
G
E
P
L
L
G
S
G
T
A
L
P
P
G
R
P
GVAG
T
S
V
L
V
P
G
G
P
F
V
L
G
VDLADEPYALDNERP
A
H
V
V
D
V
P
A
----
F
R
I
G
RVPVT
N
A
E
W
R
A
F
I
D
D
G
G
Y
R
Q
R
R
W
W
S
--
D
A
G
W
A
Y
R
C
E
A
G
L
TAPQF
W
N
P
D
G
T
R
T
R
FG
H
V
E
D
IPPDEPVQHVT
Y
F
E
A
E
A
Y
A
A
W
A
-
G
A
-
R
L
---------
P
T
E
I
E
W
E
K
A
C
AWDPA
T
G
R
R
R
-
R
Y
P
W
G
D
A
A
P
T
A
A
-------
L
A
N
LGGDALRPAP
V
G
A
Y
P
A
G
--------------------------------
A
SACG
A
E
Q
M
L
G
D
V
W
E
W
T
SS
P
L
R
P
W
P
G
F
T
P
M
----------------------
I
Y
Q
R
Y
S
Q
P
F
F
EGAGS
G
D
Y
R
V
L
R
G
G
SWAVAADILRPS
F
R
N
W
D
HPIRRQIF
A
G
V
R
L
A
W
D
V
D
4
HHSearch
51.09
10%
-159
- C3 -
-
5DO7
-
ABCG5_HUMAN
C:
[361-649]
-------------------
S
P
-----
G
V
F
S
----
K
L
G
V
L
L
R
R
V
T
R
--
N
L
V
R
N
K
L
A
V
I
T
R
--
L
L
Q
N
----
L
I
M
G
L
F
L
L
F
F
V
L
R
V
R
------
S
-
N
V
L
K
--
G
A
I
Q
D
R
----
V
G
L
L
Y
Q
F
----------------
V
G
A
T
----
P
Y
T
G
M
L
N
A
V
N
-
L
F
P
V
L
---------
R
A
V
S
D
Q
E
S
Q
D
G
L
Y
Q
------------
K
-
W
Q
M
M
L
A
Y
A
L
--
H
V
--
L
-
P
F
S
V
V
A
T
M
I
-
F
---------
S
S
V
C
Y
W
T
-
L
---
G
----------------
L
H
-
P
E
V
A
----
R
F
G
---------
Y
F
S
A
A
L
L
A
P
H
L
I
G
E
F
L
T
-
L
V
L
L
G
I
V
Q
N
P
N
I
V
-----
N
S
V
V
A
L
L
S
-----------------------
I
A
G
V
L
V
G
S
G
-
F
L
---------
R
N
I
Q
E
M
P
I
P
F
-----
K
I
I
S
Y
-
F
T
F
Q
K
Y
C
S
E
I
L
V
-------
V
N
E
----------
F
Y
G
L
N
F
T
CGSMCAFTQ
G
I
Q
F
I
E
K
TCPGATS---------
R
----
F
T
M
N
F
L
I
L
Y
S
F
----
I
P
A
L
V
I
L
G
I
V
----------------------
V
F
K
I
R
-
D
H
L
I
-------------------------------------------------
6
HHSearch
47.77
10%
-161
- C3 -
-
5NJG
1
?
B:
[379-663]
-------------------
T
T
-----
S
F
C
H
----
Q
L
R
W
V
S
K
R
S
F
K
--
N
L
L
G
N
P
Q
A
S
I
A
Q
--
I
I
V
----
T
V
V
L
G
L
V
I
G
A
I
Y
F
G
L
K
------
N
-
D
S
T
G
--
I
Q
N
R
A
-----
G
V
L
F
F
L
T
-----------------
T
N
Q
----
C
--
F
S
S
V
S
A
V
-
E
L
F
V
V
---------
E
K
K
L
F
I
H
E
Y
I
S
G
Y
Y
------------
R
V
S
S
Y
F
L
G
K
L
L
--
S
D
--
L
L
P
M
R
M
L
P
S
I
I
-
F
---------
T
C
I
V
Y
F
M
-
L
---
G
----------------
L
K
-
P
K
A
D
----
A
F
F
---------
V
M
M
F
T
L
M
M
V
A
Y
S
A
S
S
M
A
-
L
A
I
A
A
G
Q
S
V
V
S
V
A
-----
T
L
L
M
T
I
C
F
-----------------------
V
F
M
M
I
F
-
S
G
-
L
L
---------
V
N
L
T
T
I
A
S
W
L
-----
S
W
L
Q
Y
-
F
S
I
P
R
Y
G
F
T
A
L
Q
-------
H
N
E
----------
F
L
G
Q
N
F
C
PGLNATGNNPCNYATCTGEEYLVKQGIDLSPW
G
----
L
W
K
N
H
V
A
L
A
C
M
----
I
V
I
F
L
T
I
A
Y
L
----------------------
K
L
L
F
L
-
K
K
Y
--------------------------------------------------
19
Fugue
39.43
20%
-41
- C2 -
-
2SCU
1
SUCD_ECOLI
A:
[1-119]
---------------------------------------------------------------------------
S
I
L
-
I
D
K
N
T
------
K
V
I
C
Q
G
F
T
G
S
Q
G
T
F
----
H
S
E
Q
A
I
A
Y
G--------------
T
K
M
V
GGVT
P
--
G
K
G
G
T
T
H
-
L
G
L
P
V
F
NT
V
R
E
A
V
A
A
T
G
A
T
A
S
V
I
Y
V
P
A
P
------------
F
-
C
K
D
S
I
L
E
A
I
D
A
G
I
--
K
-
L
I
I
T
I
T
E
G
I
P
T
---------
L
D
M
L
T
V
K
-
V
K
L
D
E
---------------
A
G
-
V
R
M
I
G
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
36.25
18%
-60
* C2 *
-
2SCU
1
SUCD_ECOLI
A:
[1-119]
----------------------------------------------------------------------------
S
I
L
I
D
K
N
T
------
K
V
I
C
Q
G
F
T
G
S
Q
G
T
F
----
H
S
E
Q
A
I
A
Y
GTKMVGGVTPGKGGT
T
H
L
G
----
L
--
P
V
F
N
T
V
R
-
E
A
V
A
A
---------
T
-
G
A
T
A
S
V
I
Y
V
P
A
P
------------
F
-
C
K
D
S
I
L
E
A
I
--
D
A
GI
K
-
L
I
I
T
I
T
E
G
I
P
T
---------
L
D
M
L
T
V
K
-
V
K
L
D
E
---------------
A
G
-
V
R
M
I
G
----
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.99
14%
-348
- C3 -
-
5DJQ
-
?
O:
[15-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
M
----
V
A
F
L
A
G
F
G
Y
F
----------------------
I
W
---------------------------------------------------------
8
HHSearch
29.28
7%
-173
- C3 -
-
5XJY
-
?
A:
[674-1119]
-----------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
I
K
G
-
I
V
Y
E
K
---------
E
A
R
L
K
E
T
M
R
I
M
G
L
D
------------
N
-
S
I
L
W
F
S
W
F
I
--
S
S
----
L
I
P
L
L
V
S
A
G
-
L
---------
L
V
V
I
L
K
L
-
G
---
N
----------------
L
L
-
P
-
Y
S
----
D
P
S
---------
V
V
F
V
F
L
S
V
F
A
V
V
T
I
L
Q
C
-
F
L
I
S
T
L
F
S
R
A
N
L
A
-----
A
A
C
G
G
I
I
Y
-----------------------
F
T
L
Y
L
P
-
Y
V
L
C
V
---------
A
W
Q
D
Y
V
G
F
T
L
-----
K
I
F
A
S
L
L
S
P
V
A
F
G
F
G
C
E
Y
F
A
L
F
EEQ----------------------------------------------------------
G
F
N
L
T
T
S
V
S
M
----
M
L
F
D
T
F
L
Y
G
V
----------------------
M
T
W
Y
I
-
E
A
V
F
-------------------------------------------------
15
Fugue
27.64
30%
-59
* C3 *
-
1VD7
-
?
A:
[1-23]
----------
E
T
S
E
E
R
A
A
R
L
A
-----
K
M
-
S
----
A
Y
A
A
Q
R
L
A
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
27.51
35%
-257
- C3 -
-
4LD0
-
RUVC_THET8
A:
[55-99]
----------------
H
A
R
V
L
-----
E
V
L
H
----
R
F
R
P
E
A
V
A
-
V
Q
--
E
Q
F
F
Y
R
Q
N
E
L
A
Y
--
K
V
G
W
A
L
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
26.73
19%
56
- C3 -
-
1HJI
-
VNUN_BPHK0
B:
[1-26]
---------
D
R
G
L
T
S
R
D
R
R
R
I
-----
A
R
W
E
----
K
R
I
A
Y
A
L
K
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
26.22
40%
-45
- C3 -
-
4PBZ
-
B:
[1-22]
------
K
L
L
S
S
S
E
T
K
R
A
A
R
----------
R
----
P
Y
K
P
I
A
L
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
25.86
13%
-111
- C3 -
-
2LX0
-
?
A:
[17-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
L
A
F
G
F
W
----------------------
L
F
K
Y
L
-
Q
K
K
--------------------------------------------------
21
Fugue
13.16
35%
0
- C- -
-
1IBL
-
RSHX_THET8
V:
[1-24]
-----------
G
K
G
D
R
R
T
R
R
G
-----
K
I
W
R
GTYG
K
Y
R
P
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
10.45
8%
0
- C- -
-
5XJY
-
?
A:
[1695-1918]
---------------------------------------------------------------------------------------------------------------------------------------------------
V
F
-
L
I
Q
E
R
---------
V
S
K
A
K
H
L
Q
F
I
S
G
V
K
------------
P
-
V
I
Y
W
L
S
N
F
V
--
W
D
--
M
C
N
Y
V
V
P
-
A
T
L
V
I
---------
I
I
F
I
C
F
Q
-
Q
---
K
----------------
S
Y
-
V
S
S
T
----
N
L
P
---------
V
L
A
L
L
L
L
L
Y
G
W
S
I
T
P
L
M
-
Y
P
A
S
F
V
F
K
I
P
S
T
A
-----
Y
V
V
L
T
S
V
N
-----------------------
L
F
I
G
I
N
-
G
S
-
V
A
T
FVLEL------
N
N
I
N
D
I
L
-----
K
S
V
F
L
-
I
F
P
H
F
C
L
G
R
G
L
I
-------
D
M
V
----------
K
-----------------------------------------------------------------------------------------------------------------------------------------------------