@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0910: (2018-01-01 )
MPVTPNNGVSAVDDGYVFNPNDIVRDTGDAYIVRHGDHYHYIPKSSLNNPPSHSNTEEVGSSSSSVLSNPSLHVHHEEEDGHGFDANRIISEDSEGFVIPHGDHNHYIKVQTKGYEAALKNKIPSLQSNYPPGTFDEKAVLAKVDQLLADSRSIYKDKPIEQRQIELALGQFTESLKKIKVS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------.........10........20..-......30........---40........50----........60........70........80......-..90........100.......110.-......120.....-...130.......140---------.......150.......160.......170.......180----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------MPVTPNNGVSAVDD
G
Y
V
F
N
P
N
D
I-VRDTG
D
A
Y
I
V
RHGD
H
Y
---
H
YI
P
K
SSLNNPP----SHS
N
T
E
E
VGSSSSSVLSNP
S
L
H
V
H
HEEEDGHGFD
A
N
-RIISEDSE
G
F
V
IPHGDHN
H
Y
I
K
V
QTK-G
Y
E
A
A
L
K
-NKI
P
S
L
-QSNYPPGTF
D
E
K
A
V
L
A
---------
K
V
D
Q
L
L
A
D
S
R
S
IYKDKPI
E
Q
R
Q
I
E
L
A
L
G
Q
F
T
E
S
L
K
K
IKVS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
67.47
71%
-176
- C3 -
-
2CS7
-
?
A:
[2-39]
---------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
-
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
---
H
Y
I
P
K
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
67.33
60%
-122
- C3 -
-
2CS7
-
?
C:
[2-47]
---------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
-
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
---
H
Y
I
P
K
N
E
L
S
A
S
E
----
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
67.17
60%
-114
- C3 -
-
2CS7
-
?
B:
[1-47]
--------------------------------------------------------------------------------------------------------
Q
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
-
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
---
H
Y
I
P
K
N
E
L
S
A
S
E
----
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
65.53
50%
-88
- C3 -
-
2CS7
-
?
A:
[1-55]
--------------------------------------------------------------------------------------------------------
Q
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
-
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
---
H
Y
I
P
K
N
E
L
S
A
S
E
----
L
A
A
A
E
A
F
L
S
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
65.15
20%
45
- C4 -
-
4PO6
3
TYK2_HUMAN
A:
[6-546]
G
G
L
K
V
L
L
HWAGPGGGEP
W
V
T
F
SESSLT
A
E
E
V
C
I
H
I
A
H
K
V
GITPPCFNL
F
A
L
F
DAQAQ
V
W
L
P
PN
H
I
L
E
I
PRDASLM
L
Y
F
R
IR
F
Y
F
R
NWHGMNPR
E
P
A
V
Y
R
C
G
P
P
G
Q
G
M
Q
L
L
D
-------------
P
A
S
F
E
Y
L
F
E
Q
G
K
H
E
---
F
V
N
D
V
A
S
L
W
E
L
-------
S
T
E
E
E
I
H
H
F
K
N
E
S
L
G
M
A
F
L
H
L
C
H
L
A
L
R
-
H
G
I
P
L
E
-
E
V
A
K
K
T
S
F
K
D
C
I
P
R
S
F
R
R
H
-
I
R
Q
H
S
A
-
L
T
R
L
R
L
R
-
N
V
F
R
R
F
-
L
R
D
F
Q
P
G
R
L
S
Q
Q
M
V
M
V
---------
K
---
Y
L
A
T
L
E
R
L
A
P
R
-----------
F
G
T
E
R
V
P
V
C
H
L
R
L
L
A
QAEGEPCYIRDAGPPT
H
E
V
L
V
T
GTG
G
I
Q
W
W
P
VE
P
L
W
A
Y
F
CDFRDIT
H
V
V
L
K
EH
C
V
S
I
H
R
QDNKCL
E
L
S
L
PS
R
A
A
A
L
S
F
V
S
L
V
D
G
Y
F
R
L
T
ADSSHYLCHEVAP
P
R
L
V
M
S
I
R
D
GIHGPLL
E
P
F
V
Q
A
K
L
RPEDG
L
Y
L
I
H
W
S
TSHPY
R
L
I
L
T
V
A
Q
R
S
Q
A
PDG
M
Q
S
L
R
L
R
K
F
P
I
E
QAFVLEGWGRSFPS
V
R
E
L
G
A
A
L
QG
C
L
L
R
A
GD
D
C
F
S
LR
R
C
C
L
PQPGETSNL
I
I
M
R
G
26
HHSearch
54.21
33%
-82
- C3 -
-
2CS7
-
?
B:
[2-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
-
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
-
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
53.18
33%
-82
- C3 -
-
2CS7
-
?
C:
[2-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
-
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
-
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.45
39%
-191
- C4 -
-
5HWG
1
?
A:
[23-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
Q
A
G
V
T
P
G
C
F
D
E
E
G
V
L
S
---------
R
A
A
A
L
V
E
R
A
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
52.21
23%
41
- C4 -
-
4XX6
8
?
A:
[137-252]
-------------------------------------------------------------------------------------------------------------------
F
N
D
N
G
T
-
Y
R
E
--
N
V
W
Y
T
Q
L
G
P
D
Y
I
P
N
A
Y
A
V
A
R
S
V
N
T
P
S
K
L
Y
I
N
D
Y
N
T
E
G
I
N
N
K
S
D
A
L
L
A
V
V
Q
S
M
K
A
H
N
L
V
D
G
V
G
F
Q
C
H
-
F
F
V
G
E
------
L
P
P
D
L
E
Q
N
F
A
R
F
V
A
A
-
G
V
E
I
A
V
T
-
E
L
--
D
I
-
R
M
N
L
P
P
S
Q
A
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
51.10
39%
-189
- C4 -
-
5HA8
-
?
A:
[23-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
Q
A
G
V
T
P
G
C
F
D
E
E
G
V
L
S
---------
R
A
A
A
L
V
E
R
A
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.06
39%
-189
- C4 -
-
5HWH
1
?
A:
[23-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
Q
A
G
V
T
P
G
C
F
D
E
E
G
V
L
S
---------
R
A
A
A
L
V
E
R
A
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
48.06
23%
-2
- C4 -
-
2Z0R
-
?
A:
[5-101]
-------------------------------------------------------------------------------------------------------------------------------------
L
S
G
T
W
---
Y
V
L
E
----
G
D
P
G
----
E
H
L
V
V
E
A
L
G
E
R
L
S
G
I
W
T
S
R
E
L
A
E
A
F
L
A
H
H
P
H
---
L
G
M
R
V
S
A
L
E
S
--------------
R
A
L
K
E
-
A
Y
L
R
A
L
G
M
L
Q
V
E
A
V
M
V
-
D
Y
R
P
G
T
--
H
R
A
Q
V
A
---------
R
V
K
D
L
L
E
E
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
47.96
19%
1
* C3 *
-
3ZFJ
-
?
A:
[12-130]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
I
D
G
D
Q
A
G
Q
K
A
E
N
L
T
P
D
E
V
S
K
R
E
G
I
N
A
E
----
Q
-
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
H
Y
Y
N
G
K
V
P
--
Y
D
A
I
I
S
-
E
E
L
L
M
K
-
D
P
N
Y
Q
L
K
D
S
D
I
V
N
E
I
K
GGYVIKVDG
K
Y
Y
V
Y
L
K
D
A
A
H
A
D
N
I
R
T
K
E
E
I
K
R
Q
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
47.73
22%
-71
- C4 -
-
4HB1
-
?
?:
[58-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
L
K
Q
A
L
Q
---------
Q
A
Q
Q
L
L
Q
Q
A
Q
E
L
A
K
E
-----
E
L
L
K
Q
A
L
Q
Q
A
Q
Q
L
L
Q
Q
A
Q
E
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
45.28
47%
-169
- C3 -
-
3ZFJ
-
?
A:
[43-61]
------------------------------------------------------------------------------------------------------------------------
V
-
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
---
H
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
41.77
18%
-103
- C3 -
-
3ZFJ
-
?
A:
[76-120]
----------------------------------------------------------------------------------------------------------
L
L
M
K
D
P
N
Y
Q
L
K
D
S
D
I
-
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
---
Y
V
Y
L
K
D
A
A
H
A
D
N
----
I
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.48
28%
22
- C4 -
-
1MDF
-
DHBE_BACSU
A:
[399-479]
--------------------------------------------------------------------------------------------------------
N
A
A
S
F
T
E
D
G
F
-
Y
R
T
G
D
I
-
V
R
L
T
R
D
G
Y
I
V
V
E
G
R
--------
A
K
D
Q
I
N
R
G
G
----
E
K
V
A
A
E
E
V
---
E
N
H
L
L
A
H
P
A
V
H
-----
D
A
A
M
V
S
M
P
D
-
Q
F
L
G
E
R
S
C
V
F
I
I
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
41.40
28%
9
- C4 -
-
1MDB
1
DHBE_BACSU
A:
[399-479]
--------------------------------------------------------------------------------------------------------
N
A
A
S
F
T
E
D
G
F
-
Y
R
T
G
D
I
-
V
R
L
T
R
D
G
Y
I
V
V
E
G
R
--------
A
K
D
Q
I
N
R
G
G
----
E
K
V
A
A
E
E
V
---
E
N
H
L
L
A
H
P
A
V
H
-----
D
A
A
M
V
S
M
P
D
-
Q
F
L
G
E
R
S
C
V
F
I
I
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.02
28%
18
- C4 -
-
1MD9
1
DHBE_BACSU
A:
[399-479]
--------------------------------------------------------------------------------------------------------
N
A
A
S
F
T
E
D
G
F
-
Y
R
T
G
D
I
-
V
R
L
T
R
D
G
Y
I
V
V
E
G
R
--------
A
K
D
Q
I
N
R
G
G
----
E
K
V
A
A
E
E
V
---
E
N
H
L
L
A
H
P
A
V
H
-----
D
A
A
M
V
S
M
P
D
-
Q
F
L
G
E
R
S
C
V
F
I
I
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.16
20%
14
- C3 -
-
3ZFJ
-
?
A:
[37-118]
-------------------------------------------------------------------------------------------------------------------
I
N
A
E
Q
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
---
H
Y
Y
N
G
K
V
P
Y
D
A
I
----
I
S
-------------------
E
E
L
L
M
K
D
P
N
Y
Q
L
K
D
S
-
D
I
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
Y
V
Y
L
K
D
A
A
-
H
A
D
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------