@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
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Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
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Contacts with Ligands
Show alignment :
Atome selection
All alignments
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Column output:
Score:
Atome Rank Value
Tools Score
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Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
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Prosite class
Pfam class
EC Number
Taxonomy
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Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0916: (2018-01-01 )
MKKPIQKFFNNEILAYLFFGLATTLVSILSRLVIYQLSHQELLATALANIIGILFAFITNDTIVFKQKKKNRLIRLVKFSLARLSTFLLDLFLTFLFVTQFPHIIGQFVTENIDKINAIETIIAQIFIIIINYILSKVYIFRK
Atome Classification :
(16 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......----.20........30...---...-----..40----------........50........60.....----...-----------.-----70...--...-----..80.-.....----..90------........100...---....110.........120...-----....130.......140.-----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKPIQKFFNNEILAYLF----FGLATTLVSILSRLVI---YQL-----SHQE----------LLATALANIIGILFAFITN-DTIVF----KQK-----------K-----KNRLI--RLV-----KFSLA-RLSTF----LLDL------FLTFLFVTQFPHII---GQFVT--ENIDKINAIETIIAQ-----IFIIIINYILSKVYIFRK-----------------------------------------------------------------------------------------------------------------------------
17
Fugue
61.71
23%
-56
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5F3Q
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A:
[2-193]
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T----------------------------------------------------------------------------------------------------------------------
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Fugue
60.79
20%
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3GF3
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[3-587]
MYSMPGYFQN
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DNKKMAGAWVPG
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KASAAAHYVLGGPQGNNTNV
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15
Fugue
49.01
15%
-
- C- -
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3DO8
-
COAD_ARCFU
A:
[1-142]
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EID--------------------------------------------------------------------------------------------------------------------------
11
Fugue
48.44
22%
-65
* C3 *
-
2L6M
-
A:
[21-121]
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-----------------------------------------------------------------------------------------------------------------------------
16
Fugue
46.34
13%
-73
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1G2A
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DEF_ECOLI
A:
[1-164]
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18
Fugue
40.90
19%
-32
- C1 -
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5TF6
3
PRP24_YEAST
A:
[1-367]
------------------------------------------------------------------------------------------------------------MLTRNRELT
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NLPKSYN
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N---------------------------------------------------------------------------------------
13
Fugue
40.32
11%
-7
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1HE1
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19
Fugue
39.00
20%
-135
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5TCX
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CD81_HUMAN
A:
[6-232]
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RN-----------------------------------------------------------------------------------------------------------------
10
Fugue
35.54
26%
-54
- C5 -
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1WNM
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[1-23]
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12
Fugue
33.47
21%
15
- C5 -
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1WNK
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A:
[1-23]
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3
HHSearch
31.14
22%
-209
- C5 -
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2MJO
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TNR16_RAT
A:
[9-35]
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5
HHSearch
25.99
10%
-527
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1B9U
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ATPF_ECOLI
A:
[8-27]
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4
HHSearch
24.82
10%
-255
* C5 *
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4B19
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[7-27]
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6
HHSearch
22.79
15%
-191
- C5 -
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2KNC
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ITA2B_HUMAN
A:
[970-995]
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9
HHSearch
18.47
9%
-191
- C5 -
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2LOR
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TM141_HUMAN
A:
[30-80]
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7
HHSearch
15.73
5%
-93
- C5 -
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2KV5
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A:
[9-28]
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