@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0940: (2018-01-01 )
MINKLSRYMESSGKTYQNHYVTILKWYEEDKDKLRQKGLNKKMNYDVGESL
Atome Classification :
(19 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-.......---.10......------------..20...-.----..------..30.-........40........50-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-
I
N
K
L
S
R
Y
---
M
E
SSG
K
T
Y
Q
------------
N
H
Y
V
T
I
L
-
K
----
W
Y
------
E
E
D
-
K
-
D
K
L
R
Q
KGLNKKMNYDVGESL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
80.31
22%
72
- C2 -
-
1NI9
-
GLPX_ECOLI
A:
[1-327]
------------------------------------------------------------------------------------------------------------------------------------------GHMRREL
A
I
E
F
S
R
V
T
E
S
A
A
L
A
G
Y
K
W
L
G
R
GD
K
N
T
A
D
G
A
A
V
N
A
M
R
I
M
L
N
Q
VNID
G
T
I
VIGEGEAPMLYIG
E
K
V
G
TGR
G
D
A
V
D
I
A
V
DPIEGTQAN
A
L
A
V
L
A
V
G
D
KGCFLNAPD
M
Y
M
E
K
L
I
V
G
PGAKGTIDLNLP
L
-
A
D
N
L
R
N
V
---
A
A
A
L
G
K
P
L
S
------------
E
L
T
V
T
I
L
-
A
----
K
H
------
D
A
V
-
I
-
A
E
M
Q
Q
L
G
V
R
V
F
A
I
P
D
-
G
D
V
A
A
S
I
L
T
C
MPDSEVD
V
L
Y
G
I
G
G
A
P
E
G
V
V
S
A
A
V
I
R
A
L
D
G
D
M
N
G
R
L
L
AGIEAG
K
V
L
R
L
G
D
M
A
RSDN
V
I
F
S
A
T
G
ITKGDLLE
G
I
S
R
K
GN
I
A
T
T
E
T
L
L
I
R
GKSR
T
I
R
R
I
Q
S
I
H
Y
L
D-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
63.22
20%
-
- C1 -
-
4C88
-
?
A:
[0-337]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GMPTIN
S
I
Q
T
T
V
NGVV
K
I
-
V
K
P
F
N
N
-----
D
I
A
G
E
Q
F
D
------------
P
H
V
L
Q
T
L
-
T
----
A
F
K
Q
P
A
I
L
E
N
D
-
L
-
A
A
L
R
S
G
S
L
T
P
A
I
A
D
P
V
G
D
A
V
T
V
Q
S
R
N
I
T
A
LN
R
T
V
S
V
E
W
L
T
P
Q
NVINH
T
V
L
V
Y
F
H
G
G
AFYGGVPGNN
T
V
L
L
K
L
V
A
A
K
S
H
C
E
I
L
NVDYSLAPEAPAP
A
G
I
L
D
G
L
A
I
F
Q
Y
L
E
Q
R
DAE
T
M
I
T
V
A
G
D
S
A
G
A
N
V
I
M
A
A
T
N
L
N
Q
Q
L
GSNRIN
Q
Q
L
L
L
YPVTAPNADHAGPLWDLAA
F
P
I
I
DSQ
R
A
I
L
T
N
Y
H
D
L
F
R
Q
L
D
S
I
M
T
D
Y
Y
V
PENFDSHSPLISPLHQENFTMT
P
P
T
T
I
M
V
G
EFDPF
R
P
Q
A
W
A
Y
A
Q
R
L
A
A
A
D
T
A
T
T
F
I
Q
Y
Q
GLNHAFAPLVDQY
W
Q
S
Q
D
V
A
Q
V
M
A
A
A
L
I-----------------------------------------------------------------------------------------------------------------
13
Fugue
60.23
25%
20
- C2 -
-
1ZR6
3
?
A:
[3-481]
EAEFN
S
I
N
A
C
L
A
A
A
D
V
E
F
H
E
EDS
E
G
W
D
M
D
G
TAFNLRV
D
Y
D
P
A
A
I
A
I
P
RS
T
E
D
I
A
A
A
V
Q
C
G
L
D
A
G
V
Q
I
S
A
K
G
GGHSYGSYGFGGEDGHLMLELDRM
Y
R
V
S
V
D
DNN
V
A
T
I
Q
GGAR
L
G
Y
T
A
L
E
L
L
D
Q
GN
R
A
L
S
H
G
TCPAVG
V
G
G
H
V
L
G
G
G
Y
G
FATHTHGLTLDWLI
G
A
T
V
V
L
ADA
S
I
V
H
V
S
ETEN
A
D
L
F
W
A
L
R
G
GGGGFAIVS
E
F
E
F
N
T
F
EAPE
I
I
T
T
Y
Q
V
T
T
TWN
R
K
Q
H
V
A
G
L
K
A
L
Q
D
W
A
Q
NTMPRE
L
S
M
R
L
E
I
N
AN
A
L
N
W
E
G
N
F
FGN
A
K
D
L
-
K
K
I
L
Q
P
I
---
M
K
K
A
G
G
K
S
T
------------
I
S
K
L
V
E
T
-
D
----
W
Y
------
G
Q
I
-
N
-
T
Y
L
Y
G
A
D
L
N
I
T
Y
N
Y
D
V
H
E
Y
F
Y
A
N
S
L
T
A
P
RLS
D
E
A
I
Q
A
F
V
D
Y
K
F
DNSSVRPG
R
G
W
W
I
Q
WDFHGGKNSALAAVSNDETAYAHRDQL
W
L
W
Q
F
Y
D
S
I
YDYENNTSPYPESG
F
E
F
M
Q
G
F
V
A
T
IEDTLPEDR
K
G
K
Y
FNYADTTLT
K
E
E
A
Q
K
L
Y
WRGN
L
E
K
L
Q
A
I
K
A
K
Y
DPEDVFGNVVSVEPIAY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
58.69
35%
22
- C2 -
-
4HR1
-
?
B:
[19-56]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
F
L
K
G
Y
---
M
E
T
T
G
A
T
K
K
E
L
E
Q
V
E
K
L
K
E
R
V
D
E
I
A
T
A
V
-
N
----
W
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
55.95
15%
103
- C2 -
-
4C6S
2
WR52C_ARATH
A:
[5-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
E
F
V
C
I
S
C
V
EEVRYS
F
V
S
H
L
S
E
A
L
R
R
K
G
I
N
N
V
V
V
D
VDID
D
L
L
F
K
E
S
Q
A
K
I
E
K
AG
V
S
V
M
VLPGNCDPSEV
W
-
L
D
K
F
A
K
V
---
L
E
C
Q
R
N
N
K
D
------------
Q
A
V
V
S
V
L
-
Y
GDSL
L
R
------
D
Q
W
-
L
-
S
E
L
D
F
R
G
L
S
R
I
H
Q
S
R
K
E
C
S
D
S
I
L
V
E
E
I
V
R
D
V
Y
E
T
HFYV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
53.59
17%
21
- C2 -
-
2HIN
-
?
A:
[1-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
P
E
E
L
V
R
H
F
GD
V
E
K
A
A
V
G
V
G
------------
V
T
P
G
A
V
Y
-
Q
----
W
L
------
Q
A
G
-
E
I
P
P
L
R
Q
S
D
I
E
V
R
T
A
Y
K
L
K
S
D
F
T
S
Q
R
M
GKEGH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
50.59
21%
-64
- C2 -
-
2XOY
-
B:
[154-181]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
I
L
K
N
Y
---
L
A
T
R
G
L
T
W
K
------------
N
M
L
T
E
S
L
-
V
----
A
L
------
Q
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
46.08
19%
-12
* C2 *
-
1G2Z
-
HNF1A_MOUSE
A:
[1-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
-
S
----
Q
L
------
Q
T
E
-
L
M
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
45.20
24%
-276
- C2 -
-
2MDP
-
FUS_HRSVA (first)
A:
[8-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
A
A
F
---
K
A
A
T
N
K
L
F
Q
------------
L
D
L
A
V
I
Y
D
D
----
W
Y
------
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
44.49
20%
120
- C2 -
-
5AWO
-
?
A:
[15-610]
------------------------------------------------------------------------------------------------------P
V
T
A
A
P
P
LRLASRNS
V
F
T
R
S
G
A
G
P
R
Y
W
N
I
Y
G
Y
S
F
P
H
NAPIP
E
N
E
W
K
V
N
I
D
W
L
A
G
NFADFGYD
I
A
C
T
D
G
WIEGSSRTTGNGYITSYNDSWQHD
W
A
Y
W
A
N
Y
L
A
A
R
K
M
K
L
G
V
Y
Y
N
PLWVH
R
A
A
V
E
DASKTVLGRPDVKIADLVVPGDFFARDIGGNQLYWLDVTKSG
A
K
E
Y
-
V
Q
G
Y
V
R
Y
---
F
K
D
L
G
V
P
Y
L
--------------
R
I
D
F
L
-
S
----
W
Y
------
E
D
G
-
R
-
D
A
N
I
G
Q
V
N
A
P
H
G
R
A
N
Y
E
L
A
L
S
W
I
N
E
A
A
GED
M
E
V
S
L
VPHMFQDG
S
A
E
L
A
NGDLVRINADADKGGWDRLSGMRQNWQDAWPNWAN
P
F
C
G
F
T
G
W
SHRNGRG
Q
L
I
L
D
GDFMRASTFAS
D
E
E
R
K
T
M
M
N
L
M
V
A
A
GSPLAIADTYQQIGNN
A
W
V
Y
T
N
K
E
V
L
Q
L
N
A
D
G
L
V
G
K
P
LYRSATPFSKDPGSRDTE
R
W
A
G
Q
L
PDG
S
W
G
V
A
L
F
N
RSD
T
E
T
V
T
K
T
I
D
FAKDLGLA
T
G
G
N
V
R
DLWEHRNLGMDS
R
A
T
A
ALAPH
A
S
A
I
F
R
V
T
P
P
K
M
HG
T
T
R
Y
P
AAFAAWGGG
A
G
F
N
YNHPGYDGN
G
F
V
D
GLQAGSGS
A
D
P
L
V
T
F
A
V
Q
V
P
H
R
G
S
Y
A
I
R
Y
R
Y
A
N
ATG
D
T
S
T
M
T
V
T
A
E
K
ADRSTVDGP
V
H
V
S
F
P
G
L
ATWD
T
W
G
V
A
D
G
T
I
T
L
D
A
G
L
N
L
V
T
I
G
R
G
ATD
K
G
A
I
N
L
N
W
I
E
L
DM
2
HHSearch
44.32
21%
-50
- C2 -
-
2XOC
-
B:
[154-181]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
I
L
K
N
Y
---
L
A
T
R
G
L
T
W
K
------------
N
M
L
T
E
S
L
-
V
----
A
L
------
Q
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.81
14%
-88
- C2 -
-
1GYZ
-
RL20_AQUAE
A:
[60-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
R
I
N
A
A
---
V
R
A
Y
G
L
N
Y
S
------------
T
F
I
N
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
35.51
20%
60
- C2 -
-
1G2Y
-
HNF1A_MOUSE
A:
[1-31]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
-
S
----
Q
L
------
Q
T
E
M
L
-
A
A
L
L
E
S
G
L
S
K
E
A
L
I
Q
A
L
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
34.77
31%
-158
- C2 -
-
3A1G
-
PB2_I34A1
B:
[23-35]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
V
------------
D
H
M
A
I
I
K
-
K
----
Y
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
33.46
16%
-237
- C2 -
-
1LOI
1
?
?:
[1-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
V
D
F
F
---
C
E
T
C
S
K
P
W
------------------
L
V
-
G
----
W
W
------
D
Q
F
-
K
-
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.26
29%
-54
- C2 -
-
2GLO
2
?
A:
[35-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
N
------------
I
H
R
R
Q
I
Q
-
K
----
W
L
------
Q
C
E
-
S
-
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
20.51
17%
-
- C2 -
-
2DO5
-
SF3B2_HUMAN
A:
[27-38]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
V
E
R
L
Q
S
Y
---
T
R
Q
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
14.50
19%
184
- C2 -
-
2MRW
-
?
A:
[24-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
Y
G
------------
R
T
F
Q
Y
V
K
-
D
----
W
I
------
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
7.59
25%
246
- C2 -
-
2OG0
2
VXIS_LAMBD
B:
[18-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
T
V
R
-
R
----
W
V
------
R
E
S
-
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------