@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1060: (2018-01-04 )
MNQIYLRKEERMKINKKYLAGSVATLVLSVCAYELGLHQAQTVKENNRVSYIDGKQATQKTENLTPDEVSKREGINAEQIVIKITDQGYVTSHGDHYHYYNGKVPYDAIISEELLMKDPNYQLKDEDIISEIKGGYVIKVDGKYYVYLKDAAHADNVRTKEEINRQKQEHSQHREGGTPRNDGAVALARSQGRYTTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNELSASELAAAKAFLSGRGNLSNSRTYRRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSNDIDSLLKQLYKLPLSQRHVESDGLIFDPAQITSRTANGVAVPHGDHYHFIPYSQLSPLEEKLARIIPLRYRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNPIDEKLVKEAVRKVGDGYVFEENGVPRYIPAKDLSAETAAGIDSKLAKQESLSHKLGAKKTDLPSSDREFYNKAYDLLARIHQDLLDNKGRQVDFEALDNLLERLKDVSSDKVKLVDDILAFLAPIRHPERLGKPNAQITYTDDEIQVAKLAGKYTTEDGYIFDPRDITSDEGDAYVTPHMTHSHWIKKDSLSEAERAAAQAYAKEKGLTPPSTDHQDSGNTEAKGAEAIYNRVKAAKKVPLDRMPYNLQYTVEVKNGSLIIPHYDHYHNIKFEWFDEGLYEAPKGYSLEDLLATVKYYVEHPNERPHSDNGFGNASDHVQRNKNGQADTNQTEKPNEEKPQTEKPEEETPREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQVETEKVKEKLREAEDLLGKIQNPIIKSNAKETLTGLKNNLLFGTQDNNTIMAEAEKLLALLKESK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120......-.130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.-......600.......610.......620.......630.......640.......650.......660.......-670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850...
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MN
Q
I
Y
LR
K
E
E
R
M
K
I
N
K
K
Y
L
A
G
S
V
A
T
L
V
L
S
V
C
A
Y
E
LGLH
Q
A
Q
TVKENN
R
V
S
Y
IDGKQATQKTENL
T
P
D
E
V
S
KREGINA
E
Q
I
V
I
K
I
TDQGYVTSHGD
H
Y
H
Y
YNGKV
P
Y
D
A
I
I
S
E
E
L
LMKDPNYQLK
D
E
D
I
-
I
S
EIKG
G
Y
V
I
K
VD
G
K
Y
Y
V
Y
LKDAAHADNVR
T
K
E
E
I
N
R
Q
K
Q
E
H
S
Q
HREGGTPRNDG
A
V
A
L
ARSQGRYTTDD
G
Y
I
F
N
A
S
D
I
IEDTGD
A
Y
I
V
PHGD
H
Y
H
Y
IPKNEL
S
A
S
E
L
A
A
A
K
A
F
L
SGRGNLSNSR
T
Y
RRQNSDNTSRTNWVPSVSNPGTTNTNTSNNSNTNSQASQSN
D
I
D
S
L
L
K
Q
L
Y
KLPLSQRHVESD
G
L
I
F
D
P
A
Q
I
T
SRTANGVAVPHGDH
Y
H
F
I
P
Y
S
QLS
P
L
E
E
K
L
A
R
I
I
P
L
R
YRSNHWVPDSRPEQPSPQSTPEPSPSPQPAPNPQPAPSNP
I
D
E
K
L
V
K
E
A
V
R
KVGD
G
Y
V
F
EENGVPRYIPAKDLSA
E
T
AAG
I
D
S
K
L
A
K
Q
E
S
L
S
H
KLGAKKTDLPSS
D
R
E
F
Y
N
K
A
Y
D
L
L
A
R
I
H
Q
D
L
L
DNKG
R
Q
V
D
F
E
A
L
D
N
L
L
E
R
L
K
D
VSSD
K
V
K
L
V
D
D
I
L
A
F
L
APIR
H
P
E
RLGKPN
A
Q
I
T
YTDDE
I
Q
V
A
K
LAGKYTTED
G
Y
I
FDPRDITSDEGD
A
Y
VTPHMTHSHWIKK-D
S
L
S
E
A
E
R
A
A
A
Q
A
Y
A
K
EKGLTPPSTDHQDSGNTEAK
G
A
E
A
I
Y
N
R
V
K
A
A
KKVPLDRMPYN
L
Q
Y
T
V
E
VKN
G
S
L
IIPHY-DHYHN
I
K
F
E
WFDE
G
L
YEAPKGY
S
L
E
D
L
L
A
T
V
K
Y
Y
V
EHPNERPHSDNGFGN
A
S
D
H
V
QRNKNGQADTNQTEKPNEEKPQTEKPEEETPREEKPQSEKPESPKPTEEPEEESPEESPEESEEPQV
E
T
E
K
V
K
E
K
L
R
E
A
E
D
L
L
G
K
IQNPIIKSN
A
K
E
T
L
T
GLKNN
L
L
F
GTQDNN
T
I
M
A
E
A
E
K
L
L
A
L
L
KESK
11
Fugue
92.95
93%
-50
* C2 *
-
3ZFJ
-
?
A:
[12-130]
-------------------------------------------------
S
Y
I
D
G
D
Q
A
G
Q
K
A
E
N
L
T
P
D
E
V
S
K
R
E
G
I
N
A
E
Q
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
H
Y
Y
N
G
K
V
P
Y
D
A
I
I
S
E
E
L
L
M
K
D
P
N
Y
Q
L
K
D
S
D
I
-
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
Y
V
Y
L
K
D
A
A
H
A
D
N
I
R
T
K
E
E
I
K
R
Q
K
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
90.96
91%
-50
- C2 -
-
3ZFJ
-
?
A:
[12-130]
-------------------------------------------------
S
Y
I
D
G
D
Q
A
G
Q
K
A
E
N
L
T
P
D
E
V
S
K
R
E
G
I
N
A
E
Q
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
H
Y
Y
N
G
K
V
P
Y
D
A
I
I
S
E
E
L
L
M
K
D
P
N
Y
Q
L
K
D
S
D
I
-
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
Y
V
Y
L
K
D
A
A
H
A
D
N
I
R
T
K
E
E
I
K
R
Q
K
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
90.35
90%
-50
- C2 -
-
3ZFJ
-
?
A:
[12-130]
-------------------------------------------------
S
Y
I
D
G
D
Q
A
G
Q
K
A
E
N
L
T
P
D
E
V
S
K
R
E
G
I
N
A
E
Q
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
H
Y
Y
N
G
K
V
P
Y
D
A
I
I
S
E
E
L
L
M
K
D
P
N
Y
Q
L
K
D
S
D
I
-
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
Y
V
Y
L
K
D
A
A
H
A
D
N
I
R
T
K
E
E
I
K
R
Q
K
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
64.52
98%
-128
- C2 -
-
2CS7
-
?
B:
[1-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
64.16
98%
-131
- C2 -
-
2CS7
-
?
C:
[2-54]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
62.83
98%
-119
- C2 -
-
2CS7
-
?
A:
[1-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.83
98%
-119
- C2 -
-
2CS7
-
?
A:
[1-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
52.97
40%
-120
- C2 -
-
2CS7
-
?
C:
[2-54]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
52.55
40%
-122
- C2 -
-
2CS7
-
?
B:
[2-54]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
Y
T
T
D
D
G
Y
I
F
N
A
S
D
I
I
E
D
T
G
D
A
Y
I
V
P
H
G
D
H
Y
H
Y
I
P
K
N
E
L
S
A
S
E
L
A
A
A
E
A
F
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.28
25%
-156
- C2 -
-
4U6D
4
?
A:
[164-183]
------------------------------------------------------------------------------------------------------------------------------------
V
T
T
T
D
I
L
K
W
K
G
K
F
Y
L
Y
Y
Q
G
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
41.36
25%
-135
- C2 -
-
4U6D
1
?
B:
[164-183]
------------------------------------------------------------------------------------------------------------------------------------
V
T
T
T
D
I
L
K
W
K
G
K
F
Y
L
Y
Y
Q
G
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
38.51
12%
-6
- C1 -
-
1SFC
1
?
C:
[7-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
N
E
L
E
E
M
Q
R
R
A
D
Q
L
A
D
E
S
L
E
S
T
R
R
M
L
Q
L
V
E
E
S
K
D
A
G
I
R
T
L
V
M
L
D
E
Q
G
E
Q
L
D
R
V
E
E
G
M
N
H
I
N
Q
D
M
K
E
A
E
K
N
L
K
D
L
G
K
-------------------------------------------
8
HHSearch
37.58
22%
-4
- C2 -
-
3ZFJ
-
?
A:
[37-119]
--------------------------------------------------------------------------------------------------------------------------
I
N
A
E
Q
I
V
I
K
I
T
D
Q
G
Y
V
T
S
H
G
D
H
Y
H
Y
Y
N
G
K
V
P
Y
-------
D
-------------------------
A
I
I
S
E
E
L
L
M
K
D
P
N
Y
Q
L
K
D
S
D
I
V
N
E
I
K
G
G
Y
V
I
K
V
D
G
K
Y
Y
V
Y
L
K
D
A
A
H
A
D
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
34.34
21%
75
- C1 -
-
2K6I
-
Y223_METJA
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
S
V
M
E
A
I
K
E
V
K
L
A
E
E
Q
A
V
K
E
I
E
E
A
K
N
R
A
E
Q
I
K
A
E
A
I
E
E
A
K
K
L
I
A
C
----------------------------------------------------
16
Fugue
34.16
25%
-32
- C1 -
-
2PQ4
-
NAPA_ECOLI
B:
[1-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
L
-
S
R
R
S
F
M
K
A
N
A
V
A
A
A
A
A
A
A
G
L
S
V
P
G
V
A
R
A
V
V
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
32.05
21%
-49
- C1 -
-
2P5T
-
PEZA_STRPN
A:
[67-158]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
P
V
E
D
Y
E
L
T
L
K
I
E
I
V
K
E
R
G
A
N
L
L
S
R
L
Y
R
Y
Q
D
S
Q
G
I
S
-------------------
I
D
D
E
S
N
P
W
I
L
M
S
D
D
L
S
D
L
I
H
T
N
I
Y
L
V
E
T
F
D
E
I
E
R
Y
S
G
Y
L
D
G
I
E
R
M
L
E
I
S
E
K
R
M
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
31.15
14%
115
- C1 -
-
2BA2
-
Y010_MYCPN
A:
[5-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
R
Y
V
T
H
K
Q
L
D
E
K
L
K
N
F
V
T
K
T
E
F
K
E
F
Q
T
V
V
M
E
S
F
A
V
Q
N
Q
N
I
D
A
Q
G
E
Q
I
K
E
L
Q
V
E
Q
K
A
Q
G
K
T
L
Q
L
I
L
E
A
L
Q
G
I
N
K
R
L
D
N
L
E
S
-------------------------------------------
19
Fugue
30.97
23%
25
- C1 -
-
3B4Q
-
?
A:
[4-93]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
S
A
P
T
P
R
D
V
V
A
N
A
P
A
P
V
Q
A
A
V
A
G
A
Q
E
Y
A
A
Q
A
G
L
-----------
N
T
E
E
L
A
V
D
A
L
Y
N
A
I
K
V
R
L
A
---
G
G
I
P
P
Q
I
E
A
F
Y
Q
A
N
R
T
N
-
F
N
G
F
Y
M
A
N
R
G
A
I
D
F
I
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
27.22
9%
132
* C1 *
-
5D3A
1
KI21A_HUMAN
A:
[1-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
T
I
S
N
M
E
A
D
M
N
R
L
L
K
Q
R
E
E
L
T
K
R
R
E
K
L
S
K
R
R
E
K
I
V
K
E
N
G
E
G
D
K
N
V
A
N
I
N
E
E
M
E
S
L
T
A
N
I
D
Y
I
N
D
S
I
S
D
C
Q
A
N
I
M
Q
M
E
E
A
K
-----------------------------------------
17
Fugue
22.00
19%
219
- C1 -
-
3QH9
1
A:
[14-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
E
K
Q
R
K
A
E
E
L
L
Q
E
L
R
H
L
K
I
K
V
E
E
L
E
N
E
R
N
Q
Y
E
W
K
L
K
A
T
K
A
E
V
A
Q
L
Q
E
Q
V
A
L
K
D
A
E
I
E
R
L
H
S
Q
L
S
R
-----------------------------------------------------------------