@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1206: (2018-01-07 )
MKRIIPVYIFQQVNVLLVSLYLLKFLCIGELTILQILYGSSLISFLWMYGQRKQAHKVNMKSRMKWLGVEFVSLLIISLCFSLIHAQGSTNQANLIGLQHQIPWFSFLLFLINASMVEEFLYREILCNLVRKLDIRVALTSVLFALAHHTGTILAWCLYVSLGMFLGMVRYKSDLWGSMGLHLVWNLLVYSLLLF
Atome Classification :
(18 SA)
-------......----..---------.10...----....-------.--------20-...---------.....-------------.---30-----.-----------.....------..------40..-...-...50....---...-.60.--.......70.....---------.----..80...-..-..------.90........100.-..-....110-----..-----------------.------------------..---....120.--------......----------130.---...-.-..140----------------.......150-----------------.....----...160---.-....---...170--------..-..-.-------..---------------------------.180---------------.--......---.190...-----------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------MK
R
I
I
P
----
V
Y
---------
I
F
Q
Q
V
N
----
V
L
L
V
-------
S
--------
L
--
Y
L
L
---------
K
F
L
C
I-------------
G
---
E
L
-----
T
-----------
I
L
Q
I
L
------
Y
G
------
S
S
L
I
-
S
F
L
-
W
M
YGQRK
Q
A
---
H
KV-
N
M
K
S
--
R
M
K
W
L
G
V
E
F
V
S
L
L
I
---------
I
----
S
L
C
F
S
L
I
-HA-QG------STNQA
N
L
I
GLQHQI
P
-
W
F
-
S
F
L
L
F
-------
L
I
-----------------
N
------------------
A
S
---
M
V
E
E
F
L
Y
R
--------
E
I
L
C
N
L
----------
V
R
K
L
---
D
I
R
-
V
-
A
L
T
S
V
----------------
L
F
A
L
A
HH
T
G
------------------
T
I
L
A
W
----
C
L
Y
V
S
----
L
-
G
M
F
L
---
G
M
V
R
Y
---------
K
S
-
D
L
-W-------GS---------------------------
M
G
-
L
---------------
H
--
L
V
W
N
L
L
---
V
Y
S
L
L
LF-----------------------
11
Fugue
62.88
21%
-82
- C5 -
-
4P4M
3
?
A:
[92-378]
-K
P
K
L
K
A
I
Q
E
L
T
Q
----
V
H
GFG
P
R
A
A
A
A
L
F
D
R
E
G
----
I
F
T
V
-------
D
--------
E
--
L
L
Q
---------
K
A
D
S
I
-------------
P
---
S
L
-----
T
-----------
D
Q
Q
R
V
------
G
I
------
K
Y
F
Y
-
D
I
N
E
K
I
P
M
Q
E
S
V
L
---
H
E
N
-
Y
L
R
E
--
K
C
M
E
V
L
G
K
D
F
S
I
L
I
C
G
SYRRRHP
F
----
S
G
D
V
D
A
I
-
L
S
-
R
T
LDAPPL
S
E
P
V
A
A
T
G
V
L
G
H
F
V
E
-
F
L
-
E
S
L
K
Y
--------
L
-----------------
E
------------------
A
T
---
M
A
Q
G
P
L
K
Y
--------
M
G
M
G
R
L
P
PRIN
T
K
V
Y
K
A
R
R
V
---
D
I
R
-
L
I
E
T
K
S
V
----------------
P
T
A
M
L
T
F
T
G
S
K
N
F
--------------
N
V
I
M
R
----
Q
A
A
I
S
----
K
-
G
Y
L
L
N
EY
G
L
F
K
L
---------
G
T
-
P
E
-
E
ARGKNAG
E
E
---------------------------
L
G
-
V
PK
D
E
L
E
D
K
RVEVRS
E
Q
--
D
V
F
D
V
L
---
G
M
P
Y
A
K
P
ENRDP------------------
13
Fugue
59.64
15%
-125
- C7 -
-
5E04
-
?
A:
[116-399]
----SAD
W
K
A
I
G
A
----
Y
I
---------
L
G
F
A
I
P
----
I
I
L
K
-------
A
--------
L
--
Y
M
L
---------
S
T
R
G
R
-------------
Q
---
T
V
K
D
NKG
T
-----------
R
I
R
F
K
------
D
D
------
S
S
F
E
-
E
V
N
-
G
I
R
K
P
K
H
L
Y
---
V
S
M
-
P
T
A
Q
--
K
A
E
E
I
T
P
G
R
F
R
T
I
A
---------
C
----
G
L
F
P
A
Q
V
-
K
A
-
R
N
I-----
I
S
P
V
M
G
V
I
G
F
G
F
F
V
K
D
W
M
-
D
R
I
E
E
-------
F
L
A
AECPFLPKPKVASEAF
M
------------------
S
T
---
N
K
M
Y
F
L
N
R
--------
Q
R
Q
V
N
E
----------
S
K
V
Q
---
D
I
I
-
D
-
L
I
D
H
A
E
T
E
SATLFTEIATPHS
V
W
V
F
A
C
A
P
D
------------------
R
C
P
P
T
----
A
L
Y
V
A
G
V
P
E
L
-
G
A
F
F
---
S
I
L
Q
D
---------
M
R
-
N
T
-
I
-------
M
A
S
K
SVGTAE
E
K
L
K
K
KSA
F
Y
Q
S
Y
L
R
R
T
Q
S
M
G
-
I
---------------
Q
--
L
D
Q
K
I
I
---
I
L
Y
M
L
S
W
G
K
E
A
V
N
H
FHLGD-----------
19
Fugue
56.56
17%
-33
- C10 -
-
1FZC
1
FIBB_HUMAN
B:
[67-325]
--------
S
C
N
I
P
----
V
V
---------
S
G
K
E
C
E
----
E
I
I
R
-------
K
GGETS
E
--
M
--
Y
L
I
Q
PDSSV
K
P
Y
R
V
Y
C
D
MNTEN--------
G
---
G
W
-----
T
-----------
V
I
Q
N
R
Q
D
GSVD
F
G
------
R
K
W
D
-
P
Y
K
-
Q
G
F
G
N
V
A
T
N
T
DG
K
N
Y
-
C
G
L
P
--
G
E
Y
W
L
G
N
D
K
I
S
Q
L
T
---------
R
M
G
P
T
E
L
L
I
E
M
E
-
D
W
-
K
G
------
D
K
V
K
A
H
Y
G
G
F
T
V
Q
N
E
-
A
N
-
K
Y
Q
I
S
-------
V
N
-----------------
K
YRGTAGNALMDGASQLMG
E
N
---
R
T
M
T
I
H
N
G
--------
M
F
F
S
T
Y
----------
D
R
D
N
---
D
G
W
-
L
-
T
S
D
P
R
----------------
K
Q
C
S
K
E
D
G
G
---------------------
G
W
WYNR
C
H
A
A
N
----
P
N
G
R
Y
Y
---
W
G
G
Q
Y
---------
T
W
-
D
M
-
A
--------
K
---------------------------
H
G
-
T
---------------
D
DG
V
V
W
M
N
W
KGS
W
Y
S
M
R
K
M
S
M
K
I
R
PFF---------------
17
Fugue
52.37
14%
-79
* C10 *
-
4RGP
1
?
A:
[2-256]
NAT
E
Q
E
T
L
T
I
L
L
D
----
V
Y
---------
A
Y
Y
Q
A
Y
----
Q
I
V
K
-------
A
SQFFS
D
D
I
I
--
F
L
L
---------
E
L
L
K
E
R
R
E
LNV
D
F
L
F
Q
N
Q
V
---
H
L
-----
Q
-----------
E
L
E
L
T
------
Y
H
------
I
S
L
L
-
D
N
---
A
Y
E
E
E
L
L
A
---
N
Y
I
M
D
L
E
A
--
K
L
R
N
D
H
I
I
D
F
V
R
S
V
---------
S
----
P
I
L
Y
R
L
L
M
R
L
M
Q
S
------
Q
V
A
D
I
N
D
Y
I
Y
D
A
K
N
D
-
Q
Y
-
D
T
W
K
F
-------
D
K
M
----------------
H
------------------
D
S
AN
P
F
V
Q
N
F
V
A
K
GRDSKIT
S
R
S
L
A
D
F
----------
I
Q
L
T
---
D
L
P
-
Q
-
A
I
K
D
N
----------------
I
L
L
L
R
D
F
E
K
------------------
S
V
R
N
P
----
L
A
H
L
I
----
K
-
P
F
D
E
---
E
E
L
H
R
---------
T
T
-
G
F
-
S
-------
S
Q
---------------------------
T
F
-
L
---------------
E
--
K
I
I
Q
L
A
---
V
F
S
G
I
H
Y
D
NDKF
Y
F
D
K
V
N
E
L
I
K
R
I
Y
Q----
12
Fugue
47.31
18%
-78
- C8 -
-
4XLG
-
SLX1_CANGA
A:
[3-300]
-------
E
F
Q
Q
I
P
D
F
Y
G
C
Y
---------
L
L
Q
S
I
S
KRQ
S
F
Y
I
G
-------
S
--------
T
PN
P
V
R
---------
R
L
R
Q
H
N
------------
G
---
S
L
-----
S
RTKRDGTRPWE
M
V
A
I
V
------
Y
G
FPS
R
I
A
A
L
Q
F
-
Q
H
A
-
W
Q
H
G
T
R
Y
I
S
---
I
H
H
-
K
L
A
M
--
I
T
S
L
L
K
N
E
Y
F
R
Y
M
D
---------
L
----
T
L
H
F
F
N
Q
-
K
V
-
E
E
------
I
W
K
N
D
K
F
N
V
S
N
Y
T
V
S
-
L
S
-
Q
D
A
L
T
-------
E
I
-----------------
N
NDT
I
D
-------------
D
I
---
M
D
V
N
E
K
N
M
--------
E
L
V
Q
N
L
----------
Y
S
T
T
---
L
A
E
-
K
-
T
K
T
L
L
----------------
L
Y
K
E
K
I
D
T
G
INTCQFCNKIIKHNNISE
N
L
F
A
F
----
C
R
D
T
S
----
C
-
T
F
V
S
H
L
A
C
A
Y
R
Y
F
M
SEDTIIP
Q
S
-
P
K
-
C
-------
P
K
---------------------------
C
Y
-
T
---------------
L
--
L
K
W
C
D
V
---
I
Y
Y
S
I
K
L
N
K---------------------
3
HHSearch
39.10
38%
-520
- C11 -
-
2MN4
-
?
A:
[25-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
E
E
L
L
R
R
--------
G
L
L
T
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
38.95
17%
-215
- C11 -
-
4CAD
1
RCE1_METMP
F:
[128-237]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
L
F
L
-------
L
L
-----------------
L
------------------
A
A
---
T
F
E
E
L
G
W
R
--------
G
Y
A
F
D
S
----------
L
Q
S
R
YSL
F
K
A
-
S
-
I
L
F
G
I
----------------
F
W
S
L
W
H
F
P
L
IFVNNSYQYEIFNQSIWY
G
L
N
F
F
----
L
S
I
L
P
----
M
-
G
I
I
I
---
T
W
M
C
L
---------
K
N
R
K
S
I
I
-------
L
A
---------------------------
I
I
-
F
---------------
H
--
F
L
I
N
L
N
---
Q
E
L
L
--------------------------
1
HHSearch
38.38
17%
-227
* C11 *
-
4CAD
1
RCE1_METMP
I:
[128-237]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
L
F
L
-------
L
L
-----------------
L
------------------
A
A
---
T
F
E
E
L
G
W
R
--------
G
Y
A
F
D
S
----------
L
Q
S
R
YSL
F
K
A
-
S
-
I
L
F
G
I
----------------
F
W
S
L
W
H
F
P
L
IFVNNSYQYEIFNQSIWY
G
L
N
F
F
----
L
S
I
L
P
----
M
-
G
I
I
I
---
T
W
M
C
L
---------
K
N
R
K
S
I
I
-------
L
A
---------------------------
I
I
-
F
---------------
H
--
F
L
I
N
L
N
---
Q
E
L
L
--------------------------
14
Fugue
34.36
12%
-47
- C6 -
-
5UC2
5
?
A:
[5-245]
-------
A
V
R
L
V
P
----
H
R
---------
A
I
Y
D
L
T
----
L
D
R
A
DEKSGIS
G
--------
L
--
T
G
R
M
--------
V
Y
E
F
N
-------------
G
S
AC
E
G
-----
Y
-----------
T
T
N
F
R
------
F
V
------
T
R
V
D
M
D
E
Q
-
P
Q
R
V
T
D
Q
Q
T
---
T
T
F
-
E
D
A
D
GK
D
F
R
F
V
N
K
T
F
V
D
K
E
L
---------
V
----
K
E
V
R
G
D
A
-
K
L
-
E
D
------
G
K
T
V
V
K
L
S
K
P
K
E
N
T
L
-
D
L
-
K
G
T
Q
F
P
T
R
H
M
E
E
L
I
-----------------
G
------------------
K
A
---
E
A
G
Q
K
F
Y
Q
--------
T
T
L
F
D
A
----------
S
E
D
A
---
D
R
V
-
V
-
A
T
T
V
V
----------------
V
G
K
Q
Q
A
V
P
D
------------------
D
E
T
K
V
M
---
G
K
F
S
K
----
D
-
Q
V
W
P
---
V
T
I
A
Y
---------
F
D
-
D
K
-
E
-------
Q
Q
---------------------------
D
G
M
P
---------------
I
--
Y
R
I
N
F
K
---
L
Y
R
N
G
I
T
RD
L
T
M
D
YGD
F
S
M
R
G
K
L
V
K
L
D
I
Y
D
16
Fugue
32.40
16%
-132
- C9 -
-
5K8J
1
?
B:
[2-128]
--------------------------------------------------------------------------------------------------------------------------------------------
A
-
Y
V
L
D
T
N
V
A
I
---
H
L
R
-
D
G
D
P
--
E
V
T
T
R
V
T
A
L
N
G
A
I
L
---------
L
----
S
I
I
S
R
V
E
-
L
E
-
G
G
------
V
Y
R
E
A
A
Q
A
G
L
R
R
S
R
L
-
D
V
M
L
K
V
L
P
-------
V
L
-----------------
D
------------------
F
D
---
G
A
A
A
D
E
Y
R
--------
R
I
V
E
S
A
GYS-------
R
R
K
V
---
V
D
R
M
I
-
A
A
Q
A
L
----------------
A
H
R
A
T
F
V
T
F
NADDFRDIPG
L
-------
S
L
L
A
W
--------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.53
50%
-
- C3 -
-
3VOP
2
A27_VACCW
A:
[56-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
L
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
25.29
50%
-
- C1 -
-
3VOP
1
A27_VACCW
C:
[56-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
V
L
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
22.22
33%
-170
- C2 -
-
4C48
-
ACRZ_ECOLI
C:
[7-15]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
----------------
V
F
A
V
I
M
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
20.42
33%
-170
- C4 -
-
5NC5
-
?
H:
[7-15]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
----------------
V
F
A
V
I
M
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
18.96
23%
-
- C11 -
-
1DC1
-
T2B1_GEOSE
B:
[110-131]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
D
E
L
I
F
R
--------
Y
L
L
F
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
18.95
30%
-136
* C12 *
-
2CB2
-
SOR_ACIAM
D:
[293-308]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
-----------------
L
------------------
N
P
---
M
M
E
G
T
F
W
R
--------
E
Y
L
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
15.15
9%
0
- C- -
-
1BCF
-
BFR_ECOLI
A:
[1-157]
-------
M
K
G
--
D
----
T
K
---------
V
I
N
Y
L
N
----
K
L
L
G
-------
N
--------
E
--
L
V
A
---------
I
N
Q
Y
F
-------------
L
---
H
A
-----
R
-----------
M
F
K
N
W
------
G
L
------
K
R
L
N
-
D
V
E
-
Y
H
E
S
I
D
E
M
K
---
H
A
D
-
R
Y
I
E
--
R
I
L
F
L
E
-------------------------------
G
-
L
P
------
N
L
Q
D
L
G
K
L
N
I
G
E
D
V
E
-
E
M
-
L
R
S
D
L
-------
A
L
-----------------
E
------------------
L
D
---
G
A
K
N
L
R
E
A
--------
I
G
Y
A
D
S
----------
V
H
D
Y
---
V
S
R
-
D
-
M
M
I
E
I
----------------
L
R
D
E
E
G
H
I
D
------------------
W
L
E
T
E
----
L
D
L
I
Q
----
K
-
M
------
G
L
Q
N
Y
---------
L
Q
-
A
Q
-
I
-------
R
E
---------------------------
E
------------------------------------------------------------
5
HHSearch
8.82
29%
170
- C12 -
-
3BXV
-
?
A:
[291-307]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
-----------------
I
------------------
N
P
---
V
M
E
G
T
F
W
R
--------
E
Y
L
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------