@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1299: (2018-01-09 )
MEFLLYTISKVKLLEDILMPQPIVPVEIPQSRPFDSKKRNDILLKIRIGKLEVSFFQSLNLEMVEQLLDKVLLYDNSSI
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.---.......30........40.-......----.--50......-..60.....--.--..70........------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
F
L
L
Y
T
I
S
K
V
K
L
L
E
D
ILMPQP---IV
P
V
EIPQSRPFDSKKRN
D
I
-
L
L
K
I
R
I----G--
K
L
E
V
S
F
F
Q
-SL
N
L
E
M
V
E
Q
--
L
--
L
D
K
V
LLYDNSSI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
72.74
27%
-287
- C6 -
-
1KNX
-
HPRK_MYCPN
B:
[55-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
----
G
--
K
R
E
F
G
F
L
S
-
Q
K
T
L
V
E
Q
Q
Q
--
I
--
L
H
N
L
L
K
L
N
P
P
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
70.29
27%
-295
- C6 -
-
1KNX
-
HPRK_MYCPN
E:
[55-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
----
G
--
K
R
E
F
G
F
L
S
-
Q
K
T
L
V
E
Q
Q
Q
--
I
--
L
H
N
L
L
K
L
N
P
P
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
66.98
15%
-128
- C5 -
-
2N3Z
-
?
A:
[1-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
L
V
V
V
V
T
S
E
Q
L
K
E
E
V
R
K
K
F
P
---
Q
V
E
V
R
L
V
T
T
E
E
D
A
K
Q
V
I
K
E
I
-
Q
K
K
G
V
Q
----
K
--
V
V
L
V
G
V
S
E
-
K
L
L
Q
K
I
K
Q
E
--
A
--
N
V
Q
V
Y
R
V
T
S
N
D
E
L
E
Q
V
V
K
D
V
K
GSGL
E
H
H
H
H
H
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
65.35
23%
-74
- C5 -
-
1UW1
1
?
A:
[9-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
K
K
T
N
W
L
K
R
I
Y
R
V
R
P
---
C
V
K
C
K
V
A
---
P
R
N
W
K
V
K
N
K
----
H
L
R
I
----
Y
--
N
M
C
K
T
C
F
N
-
N
S
I
D
I
G
D
D
T
--
Y
H
G
H
D
D
W
L
M
Y
A
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
63.34
24%
7
- C5 -
-
4F7O
-
CSN5_HUMAN
A:
[2-257]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASG
S
G
M
A
Q
K
T
W
E
L
A
N
N
M
Q
E
A
QSIDEIYKYD
K
K
Q
Q
Q
E
I
L
A
A
KPWTKDHHYFK
Y
C
K
I
S
A
L
A
L
L
K
M
V
M
H
A
R
S
G
GNL
E
V
M
G
L
M
L
G
K
V
D
G
E
T
M
I
I
M
D
S
F
A
L
PVEGTETRVNAQA
A
A
Y
E
Y
M
A
A
Y
I
E
N
A
K
QVGRLENAI
G
W
Y
H
S
HPGY
G
C
W
L
S
G
I
D
V
S
T
Q
M
L
N
Q
Q
FQ
E
P
F
V
A
V
V
I
D
P
T
R
T
-----
I
S
A
G
---
K
V
N
L
G
A
F
R
T
Y
P
K
G
Y
K
P
P
D
K
------
Q
Y
----
Y
--
A
L
E
V
S
Y
F
K
S
S
L
D
R
K
L
L
E
L
--
L
--
W
N
K
Y
W
V
N
T
L
S
S
S
SLLT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
60.37
19%
-297
- C6 -
-
2KTF
-
B:
[681-701]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
D
I
D
P
Q
V
F
Y
-
E
L
P
E
A
V
Q
K
E
--
L
--
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
60.04
15%
-8
* C5 *
-
5KP7
1
?
B:
[25-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
K
E
Q
V
L
K
I
I
K
K
Y
T
R
E
I
A
P
E
L
E
D
S
P
---
L
E
P
T
D
S
L
K
K
L
G
I
D
S
V
N
R
A
E
I
-
I
M
M
V
M
E
D
L
SL
N
--
I
P
R
I
E
L
A
G
-
A
K
N
I
G
E
L
A
D
--
L
--
F
A
A
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
54.92
17%
-
- C- -
-
4IL7
-
?
A:
[138-222]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
Y
L
I
Y
S
G
F
G
T
S
L
P
Q
T
Y
T
I
P
A
N
G
Y
L
I
I
S
I
T
N
T
S
T
G
N
I
-----
G
Q
I
-
T
L
T
I
G
S
----
T
--
T
M
T
F
N
L
Q
T
-
G
E
N
K
I
P
V
I
A
GT
Q
--
I
T
N
M
T
L
T
S
S
S
A
I
L
I
Y
E
EV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
54.80
22%
-239
* C6 *
-
1KO7
-
HPRK_STAXY
A:
[52-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
----
G
--
T
T
E
L
S
F
Y
N
-
L
L
P
D
E
E
R
K
G
--
R
--
M
R
K
L
C
R
P
E
T
P
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
54.76
16%
5
- C5 -
-
1GRJ
-
?
?:
[2-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
A
I
P
M
T
L
R
G
A
E
K
L
R
E
E
L
D
F
L
K
S
V
R
R
P
---
E
I
I
A
A
I
A
E
A
R
E
H
G
D
L
K
E
N
-----
A
E
Y
H
----
A
--
A
R
E
Q
Q
G
F
C
-
E
G
R
I
K
D
I
E
A
--
K
--
L
S
N
A
Q
V
I
D
V
T
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
52.04
17%
73
- C4 -
-
4M1K
1
?
A:
[6-688]
EYDLKR
L
R
N
I
G
I
A
A
H
IDAG
K
T
T
T
T
E
R
I
L
Y
Y
T
G
RIAA
V
T
T
C
F
W
KD
H
R
I
N
I
I
DTPGHVDF
T
I
E
V
E
R
S
M
R
V
LD
G
A
I
V
V
F
DSSQGVE
P
Q
S
E
T
V
W
R
Q
A
E
K
Y
K
V
P
R
I
A
F
ANKMDKTGAD
L
W
L
V
I
R
T
M
Q
E
RLGARPVVM
Q
L
P
I
G
REDTFS
G
I
I
D
VLRM
K
A
Y
T
Y
GNDLGTDIREIPIPEEY
L
D
Q
A
R
E
Y
H
E
K
L
V
E
V
A
A
D
F
D
E
N
I
M
L
K
Y
L
E
G
E
E
P
T
E
E
E
L
V
A
A
I
R
K
G
T
I
D
LK
I
T
P
V
F
L
G
S
ALKNKG
V
Q
L
L
L
D
A
V
V
D
YLPSPLD
I
P
P
I
K
G
T
T
PEG
E
V
V
E
I
H
PDPNG
P
L
A
A
L
AFKIMADPYV
G
R
L
T
F
I
R
V
Y
S
G
T
L
T
S
G
S
Y
V
Y
NTTKG
R
K
E
R
V
A
R
L
L
R
M
H
AN
H
R
E
E
V
EELKAG
D
L
G
A
V
V
GLKETIT
G
D
T
L
V
G
E
D
A
P
R
V
I
L
E
S
I
E
V
P
E
P
---
V
I
D
V
A
I
E
P
K
T
K
A
D
Q
E
K
L
S
Q
A
-
L
A
R
L
A
E
----
E
D
P
T
F
R
V
S
T
H
P
-
E
T
G
Q
T
I
I
S
G
--
M
--
G
E
L
H
L
E
I
I
V
D
R
L
K
REFKVDANVGKPQVA
Y
R
E
T
I
T
K
P
V
D
V
E
G
K
F
I
R
L
TGG
R
G
Q
Y
G
H
V
K
I
K
V
E
P
L
P
RGS
G
F
E
F
V
N
AIVGGVIPKEY
I
P
A
V
Q
K
G
I
E
E
A
M
QSGPLIGFPVVD
I
K
V
T
LY
D
G
S
Y
HEVDSS
E
M
A
F
K
I
A
G
S
M
A
I
K
E
A
V
Q
K
GD
P
V
I
L
E
P
I
M
R
V
E
V
T
T
PEEY
M
G
D
V
I
G
D
L
N
A
R
RGQIL
G
M
E
P
R
GN
A
Q
V
I
R
A
F
V
P
LAEMFG
Y
A
T
D
L
R
S
K
T
Q
GR
G
S
F
V
M
F
F
D
H
Y
Q
E
V
P
K
Q
V
Q
E
K
LI
16
Fugue
50.95
17%
33
- C5 -
-
2N73
-
PI4KB_HUMAN
B:
[1-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
M
V
E
A
R
S
L
A
V
A
M
G
D
T
V
V
E
P
A
P
---
L
K
P
T
S
E
P
T
S
G
P
P
G
N
N
G
G
S
L
L
S
V
I
T
E
G
V
----
G
--
E
L
S
V
I
D
P
E
-
V
A
Q
K
A
C
Q
E
V
--
L
--
E
K
V
K
L
L
H
G
G
V
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.46
40%
-175
* C7 *
-
2HJ0
-
?
A:
[202-223]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
V
I
V
T
D
T
L
V
P
Y
P
---
N
T
P
I
S
I
P
Q
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
48.39
17%
-215
- C6 -
-
2KWU
-
POLI_MOUSE
A:
[682-704]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
P
--
D
I
D
P
Q
V
F
Y
-
E
L
P
E
E
V
Q
K
E
--
L
--
M
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
46.99
15%
-22
- C6 -
-
5JFF
-
YHFG_ECOLI
B:
[22-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
R
L
W
E
L
Q
R
N
R
N
F
-
Q
A
S
R
R
L
----
E
--
G
V
E
M
P
L
-
V
-
T
L
T
A
A
E
A
L
A
--
R
--
L
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.25
47%
18
- C6 -
-
5CU1
-
DDDQ_RUEPO
A:
[42-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
D
S
L
T
P
Q
P
---
V
T
P
V
R
I
P
P
A
A
L
M
E
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.11
15%
2
- C6 -
-
5JFF
-
YHFG_ECOLI
D:
[22-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
R
L
W
E
L
Q
R
N
R
N
F
-
Q
A
S
R
R
L
----
E
--
G
V
E
M
P
L
-
V
-
T
L
T
A
A
E
A
L
A
--
R
--
L
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.10
29%
81
- C3 -
-
3J26
-
?
N:
[60-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
T
Q
---
N
I
P
L
T
I
P
Q
I
Q
P
Y
P
N
T
N
V
N
N
T
-
I
Y
S
V
S
I
----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.60
60%
326
- C1 -
-
3W53
-
?
A:
[349-363]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
P
---
V
V
P
T
D
S
P
K
S
S
P
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
32.67
9%
67
- C5 -
-
1X2M
-
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
S
G
S
S
G
T
A
Q
P
N
A
I
L
E
K
V
F
T
A
I
T
---
K
H
P
---------
D
E
K
R
L
E
G
L
-
S
K
Q
L
D
W
----
D
--
V
R
S
I
Q
R
W
F
-
R
Q
R
R
N
Q
E
K
P
--
S
--
G
P
S
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------