@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1319: (2018-01-09 )
MKMKTTFSYPKWAEIPNIDLYLDQVLLYVNQVCAPISPNKDKGLTASMVNNYVKNGYLTKPDKKKYQRQQIARLIAITTLKSVFSIQEIAQTLNTLQTQASSDQLYDAFVDYMNQGIDPANPIIQTSCQTVKLYHQTLDLIDHTQEEVIQ
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........----20......---..30...----.....40........50.--....--..-.60--.-----.-----......70--........80..--......90........100.....------..110.......120...----....130.......140.......150----------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKMKTTFSYPKWAEIP
N
I
D
----
L
Y
L
D
Q
V
L
L
---
Y
V
N
Q
VCA----PISPNKDKG
L
T
A
S
M
V
N
N
Y
--
V
KNG--YL-TK
P
--
D
-----
K
-----
K
K
Y
Q
R
Q
Q
I
--
A
R
L
I
A
I
T
T
L
K
S
V
--
F
S
I
Q
E
I
A
Q
T
L
N
T
L
Q
TQASS
D
Q
L
Y
D
------
A
F
V
D
Y
M
NQGIDPAN
P
I
I
Q----TSC
Q
T
V
K
L
Y
H
Q
T
L
D
L
I
D
H
T
Q
E
E
VIQ------------------------------------------------------------------------------------------------------------
9
HHSearch
65.78
24%
-64
- C4 -
-
5GPE
-
?
G:
[10-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
D
C
L
V
Q
T
V
R
F
Y
--
E
S
E
G
--
L
L
-
P
E
P
--
A
RSEGN
F
-----
R
L
Y
D
E
V
H
L
--
Q
R
L
L
F
I
R
R
C
R
A
K
D-
M
T
L
D
E
I
R
Q
L
L
N
L
R
D
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
63.90
25%
-65
- C4 -
-
1Q06
-
CUER_ECOLI
A:
[9-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
G
L
T
S
K
A
I
R
F
Y
--
E
E
K
G
--
L
V
-
T
P
P
--
M
R
S
ENG
Y
-----
R
T
Y
T
Q
Q
H
L
--
N
E
L
T
L
L
R
Q
A
R
Q
V
G-
F
N
L
E
E
S
G
E
L
V
N
L
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
63.80
25%
-71
- C4 -
-
4WLW
-
CUER_ECOLI
A:
[9-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
G
L
T
S
K
A
I
R
F
Y
--
E
E
K
G
--
L
V
-
T
P
P
--
M
RSENG
Y
-----
R
T
Y
T
Q
Q
H
L
--
N
E
L
T
L
L
R
Q
A
R
Q
V
G-
F
N
L
E
E
S
G
E
L
V
N
L
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
63.38
26%
-83
- C4 -
-
5CRL
-
MERR_PSEAI
B:
[15-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
A
G
V
N
V
E
T
I
R
F
Y
--
Q
R
K
G
--
L
L
-
L
----------------
R
R
Y
G
E
A
D
V
--
T
R
V
R
F
V
K
S
A
Q
R
L
G-
F
S
L
D
E
I
A
E
L
L
R
L
E
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
62.58
25%
-45
- C4 -
-
3GPV
-
?
B:
[29-93]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
Q
H
L
T
I
S
Q
I
R
Y
Y
--
D
K
Q
G
--
L
F
-
P
F
L
--
Q
RNEKG
D
-----
R
I
F
N
E
E
A
L
--
K
Y
L
E
M
I
L
C
L
K
N
T
G-
M
P
I
Q
K
I
K
Q
F
I
D
W
S
M
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
62.16
21%
-49
- C4 -
-
1R8D
-
MTA_BACSU
B:
[10-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
S
G
V
S
I
R
T
L
H
H
Y
--
D
N
I
E
--
L
L
-
N
P
S
--
A
-----
L
TDAGY
R
L
Y
S
D
A
D
L
--
E
R
L
Q
Q
I
L
F
F
K
E
I
G-
F
R
L
D
E
I
K
E
M
L
D
H
P
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
61.13
21%
-58
- C4 -
-
1R8D
-
MTA_BACSU
A:
[10-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
S
G
V
S
I
R
T
L
H
H
Y
--
D
N
I
E
--
L
L
-
N
P
S
--
A
-----
L
TDAG
Y
R
L
Y
S
D
A
D
L
--
E
R
L
Q
Q
I
L
F
F
K
E
I
G-
F
R
L
D
E
I
K
E
M
L
D
H
P
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
59.44
13%
-69
- C4 -
-
1JBG
-
MTA_BACSU
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
--------------------
I
R
----
T
L
H
H
Y
D
N
I
E
L
L
N
P
S
A
L
T
------------
D
-
A
--
G
-----
Y
-----
R
L
Y
S
D
A
D
L
--
E
R
L
Q
Q
I
L
F
F
K
E
I
G-
F
R
L
D
E
I
K
E
M
L
D
H
-----
P
N
F
D
R
K
A
------
A
L
Q
S
Q
K
E
I
L
M
K
K
K
Q
R
M
D
E
----
M
I
Q
T
I
D
R
T
L
L
S
--------------------------------------------------------------------------------------------------------------------------
29
Fugue
59.30
20%
-148
- C4 -
-
2KXE
-
DP2S_PYRHO
A:
[1-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
E
F
V
K
G
L
--
M
K
N
G
--
Y
L
-
I
T
P
--
S
-----
A
-----
Y
Y
L
L
V
G
H
F
--
N
--------
E
G
K
--
F
S
L
I
E
L
I
K
F
A
K
S
R
E
T
F
I
I
D
D
E
I
A
N
------
E
F
L
K
S
I
--
G
A
E
V
E
L
P
Q
E
I
----
K
------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
59.30
18%
-27
- C4 -
-
1JBG
-
MTA_BACSU
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
Q
V
K
Q
V
A
E
I
S
-------------------------------------
G
V
S
I
R
T
L
H
H
Y
--
D
N
I
E
--
L
L
-
N
P
S
--
A
-----
L
TDAG
Y
R
L
Y
S
D
A
D
L
--
E
R
L
Q
Q
I
L
F
F
K
E
I
G-
F
R
L
D
E
I
K
E
M
L
D
-------------------------
H
P
N
F
D
R
K
A
A
L
Q
S
----
Q
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
D
R
T
L
L
S
------------------------------------------------------------------------------------------------------------
6
HHSearch
59.21
19%
-82
- C4 -
-
2DG6
-
?
A:
[8-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
S
G
V
S
T
A
T
I
K
Y
Y
--
L
R
E
G
--
L
L
-
P
P
G
----------------
Y
D
E
D
H
L
--
R
R
L
R
L
V
R
A
L
I
Q
V
GK
V
P
V
A
T
A
R
E
V
L
G
H
V
D
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
59.02
20%
-5
- C4 -
-
2FOK
-
T2F1_PLAOK
A:
[287-386]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
K
R
--
V
Y
W
E
--
M
L
A
T
N
L
--
T
-----
D
-----
K
E
Y
V
R
T
R
R
--
A
L
I
L
E
I
L
I
K
A
G
S
--
L
K
I
E
Q
I
Q
D
N
L
K
K
L
G
F
D
E
V
I
E
T
I
E
N
------
D
I
K
G
L
I
N
T
G
I
-----
F
I
E
----
I
K
G
R
F
Y
Q
L
K
D
H
I
L
Q
F
V
I
P
N
R
L
V
---------------------------------------------------------------------------------------------------------------
35
Fugue
58.76
18%
28
- C3 -
-
4XGC
-
?
D:
[5-457]
D
R
E
L
V
S
I
R
R
F
L
K
E
R
L
Q
RDYTTLRGY
A
K
E
R
S
N
V
R
L
L
L
Q
R
T
A
E
MG
E
S
N
S
L
L
L
L
G
P
RGSG
K
T
T
L
I
N
S
V
L
A
D
L
L
P
NK
S
F
G
E
N
T
L
I
V
H
L
D
GNLHTD
D
R
V
A
L
K
S
I
T
V
Q
M
QLENAADGKVFGS
F
A
E
N
L
A
F
L
L
Q
C
L
KS
K
S
V
I
F
I
L
E
E
F
D
L
F
C
A
HHNQ
T
L
L
Y
N
L
F
D
V
S
Q
S
AQ
A
P
I
C
V
L
G
V
T
CRLDVIELLE
K
R
V
K
S
R
F
S
H
R
Q
V
F
L
F
P
S
L
R
----
R
F
E
D
Y
V
D
L
---
C
R
D
L
L
------
S
L
P
T
G
N
S
L
L
L
A
A
E
K
I
Y
N
L
Q
N
I
Q
S
G
AL
Y
F
-
S
R
N
HF
D
-----
P
-----
G
E
Y
G
F
S
P
R
--
L
R
D
A
W
N
K
Q
I
C
K
V
--
L
A
T
Q
Q
A
R
S
T
L
Q
A
L
H
D
F
D
I
S
E
A
Y
L
K
------
N
F
L
F
R
L
V
A
H
L
R
P
Q
S
P
H
I
T
--------
A
E
K
M
A
A
V
G
S
Q
F
E
G
D
D
K
I
E
L
L
C
G
LS
V
L
E
L
C
L
I
I
A
I
K
H
H
S
Q
I
Y
DRDSFN
F
E
I
I
Y
A
R
F
S
K
F
A
K
V
STTMQAVER
S
I
V
L
K
A
F
E
H
L
R
I
A
EL
I
M
P
L
TKVQKEF
E
M
H
K
L
ALT
Y
S
Q
I
H
H
C
M
Q
R
YQALPT
E
V
A
Q
W
A
QSS
8
HHSearch
58.24
23%
-41
- C4 -
-
3QAO
3
?
A:
[11-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
T
G
V
S
V
R
T
L
H
H
Y
--
D
K
I
G
--
L
L
-
V
P
Q
--
K
D
DWNG
Y
-----
R
I
Y
S
E
K
D
V
--
D
K
L
Q
Q
I
L
F
F
K
E
L
D-
F
P
L
K
K
I
Q
Q
I
L
D
D
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
57.77
17%
36
- C2 -
-
5GNG
-
Y1552_HAEIN
A:
[1-214]
------------------------------------------------------------------------------------------------------------------------------------------M
K
T
K
F
Y
D
YQGE
H
L
I
L
Y
F
A
G
WGTPPDAVNH
L
I
L
P
E
N
H
D
L
L
I
C
YDY
Q
D
L
N
L
D
F
D
L
S
A
Y
R
H
I
R
L
V
A
W
S
M
G
V
W
V
A
E
R
V
L
QGI
R
L
K
S
A
T
A
V
NGT
G
L
P
C
D
D
S
F
G
I
P
Y
A
I
F
K
G
T
--
L
E
N
----
L
-
T
E
N
--
T
-----
R
-----
L
K
F
E
R
R
I
C
GD
K
A
S
F
E
R
Y
Q
L
F
P
A
--
R
P
F
D
E
I
H
Q
E
L
T
A
L
F
A
M
I
Q
Q
D
K
R
I
D
LIHWA
N
A
W
V
S
S
R
D
K
I
F
T
P
A
N
Q
H
Q
Y
W
A
LR
C
A
V
Q
E
I
E
G
E
H
Y
V
F
S
R
F
T
H
-
W
S
A
L
W
D
------------------------------------------------------------------------------------------------------------
24
HHSearch
57.55
19%
-43
- C4 -
-
4R4E
1
GLNR_BACSU
A:
[19-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
T
E
L
S
A
R
Q
I
R
Y
Y
--
E
E
N
G
--
L
I
-
F
P
A
--
R
T
EGN-
R
-----
R
L
F
S
F
H
D
V
--
D
K
L
L
E
I
K
H
L
I
E
Q
G-
V
N
M
A
G
I
K
Q
I
L
A
K
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
57.24
14%
-102
- C4 -
-
3GP4
1
?
A:
[10-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
G
V
S
A
D
T
I
R
Y
Y
--
E
R
I
G
--
L
I
-
P
P
I
--
H
R
N
ESG
V
-----
R
K
F
G
A
E
D
L
--
R
W
I
L
F
T
R
Q
M
R
R
A
G-
L
S
I
E
A
L
I
D
Y
L
A
L
F
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
57.17
22%
-11
* C4 *
-
4R24
1
TNRA_BACMW
B:
[16-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
T
G
L
S
E
R
Q
I
R
Y
Y
--
E
K
R
S
--
L
L
-
F
P
D
--
R
TNTG-
I
-----
R
K
Y
S
F
S
D
V
--
E
R
L
M
D
I
A
D
R
I
E
E
G-
V
Q
T
S
E
I
R
T
E
L
A
K
K
D
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
56.54
22%
-14
- C4 -
-
3HH0
-
?
A:
[10-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
G
D
V
T
V
R
A
L
R
Y
Y
--
D
K
I
N
--
L
L
-
K
P
S
--
D
YTEGG
H
-----
R
L
Y
T
K
D
D
L
--
Y
V
L
Q
Q
I
Q
S
F
K
H
L
G-
F
S
L
G
E
I
Q
N
I
I
L
Q
R
D
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
56.12
19%
-48
- C4 -
-
5E01
2
Y186_HAEIN
B:
[12-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
I
G
I
S
A
Y
T
L
R
F
Y
--
D
K
E
G
--
L
L
-
P
N
V
--
G
RDEYG
N
-----
R
R
F
T
D
K
D
L
--
Q
W
L
S
L
L
Q
C
L
K
N
T
G-
M
S
L
K
D
I
K
R
F
A
E
C
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------