@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1418: (2018-01-11 )
MKKNSLYIISSLFFACVLFVYATATNFQNSTSARQVKTETYTNTVTNVPIDIRYNSDKYFISGFASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGVGTIEVPLSIEDLPNGLTAVATPQKITVKIGKKAQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPTSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPVAPSSSTSNSSTSSSSETSSSTKATSSKTN
Atome Classification :
(20 SA)
---------------------------.........10----......---..20........30........40........50-----..--.-.....60..-...-.----..70......--.--.80.-....-.--..90.-------------------....-------------..---.100.......110....-----...-120.----.......130..-----...----..-140....-.---..-150.......160........---170..--.-----...--.----180-.........190---...-..----...200------..----------...-...210----------....--...220....-----...230.-......240-.......250.......-------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------MKKN
S
L
Y
I
I
S
S
----
L
F
F
A
C
V
---
L
F
V
Y
A
TATNFQNSTSA
R
Q
V
K
TETYTNTVTN
V
P
I
D
-----
I
R
--Y-NSD
K
Y
F
I
SG-FA
S
-
E
----
V
S
V
V
L
TGA
N
R
--
L
--
S
L
A
S
-
E
M
Q
E
-S--TR
K
F
K
-------------------
V
T
A
D-------------LT---DAGV
G
T
I
E
V
P
L
S
I
E
DLPN-----GLT-AV-A----TP
Q
K
I
T
V
KIGKK-----AQK----D
K
-
V
K
I
VPEI-
D
---
P
S
-QIDS
R
V
Q
I
E
N
V
M
-VSDK
E
V
SI---TS
D
Q
E
--
T
-----
L
D
R
--
I
----
D
---
K
I
I
A
VLPTS
E
R
----
I
TG-NY----SGSVP-------
L
Q
----------
A
ID-RN
G
V
V
L
----------
P
A
VI--T
P
F
D
T
I
M
K
VT-----TKPVAPS-SSTSNSSTS-SSSETSSSTKATSSKTN-------------------------------------------------------------------------
1
PsiBlast_PDB
85.41
98%
-117
- C5 -
-
4QDY
2
?
A:
[1-198]
------------------------------------------------------------------
G
R
Q
V
K
T
E
T
Y
T
N
T
V
T
N
V
P
I
D
-----
I
R
--
Y
-
N
S
D
K
Y
F
I
S
G
-
F
A
S
-
E
----
V
S
V
V
L
T
G
A
N
R
--
L
--
S
L
A
S
-
E
M
Q
E
-
S
--
T
R
K
F
K
-------------------
V
T
A
D
-------------
L
T
---
D
A
G
V
G
T
I
E
V
P
L
S
I
E
D
L
P
N
-----
G
L
T
-
A
V
-
A
----
T
P
Q
K
I
T
V
K
I
G
K
K
-----
A
Q
K
----
D
K
-
V
K
I
V
P
E
I
-
D
---
P
S
-
Q
I
D
S
R
V
Q
I
E
N
V
M
-
V
S
D
K
E
V
S
I
---
T
S
D
Q
E
--
T
-----
L
D
R
--
I
----
D
---
K
I
I
A
V
L
P
T
S
E
R
----
I
T
G
-
N
Y
----
S
G
S
V
P
-------
L
Q
----------
A
I
D
-
R
N
G
V
V
L
----------
P
A
V
I
--
T
P
F
D
T
I
M
K
V
T
-----
T
K
P
V
--------------------------------------------------------------------------------------------------------
6
HHSearch
82.23
96%
21
- C5 -
-
4QDY
2
?
A:
[3-198]
--------------------------------------------------------------------
Q
V
K
T
E
T
Y
T
N
T
V
T
N
V
P
I
D
-----
I
R
--
Y
-
N
S
D
K
Y
F
I
S
G
-
F
A
S
-
E
----
V
S
V
V
L
T
G
A
N
R
L
S
L
--
A
S
-----
E
M
-
Q
ES
T
R
K
F
K
-------------------
V
T
A
D
-------------
L
T
---
D
A
G
V
G
T
I
E
V
P
L
S
I
E
D
L
P
N
-----
G
L
T
-
A
V
-
A
----
T
P
Q
K
I
T
V
K
I
G
K
K
-----
A
Q
K
-----
D
K
V
K
I
V
P
E
I
-----
D
P
S
Q
I
D
S
R
V
Q
I
E
N
V
M
-
V
S
D
K
E
V
S
I
---
T
S
D
Q
E
--
T
-----
L
D
R
--
I
----
D
---
K
I
I
A
V
L
P
T
S
E
R
----
I
T
G
-
N
Y
----
S
G
S
V
P
-------
L
Q
----------
A
I
D
-
R
N
G
V
V
L
----------
P
A
V
I
--
T
P
F
D
T
I
M
K
V
T
-----
T
K
P
V
--------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
52.11
31%
-167
- C5 -
-
5HQH
-
?
A:
[13-102]
------------------------------------------------------------------------------
I
E
N
V
P
V
K
-----
V
Y
--
Y
-
D
K
T
N
L
Y
I
S
G
-
I
P
E
-
T
----
V
T
V
T
L
S
G
P
R
S
--
I
--
V
Q
S
A
-
K
A
Q
Q
-
D
-----
F
T
-------------------
V
Y
A
D
-------------
L
K
---
N
A
S
I
G
T
Q
E
V
K
L
Q
V
K
D
V
S
D
-----
R
L
K
-
V
K
-
V
----
N
P
A
T
V
N
V
N
V
Q
E
K
-----
V
T
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
51.74
17%
-119
- C5 -
-
2KQ1
-
?
A:
[1-119]
--------------------------------------------------------------------
M
P
T
F
D
H
G
N
L
S
L
G
E
L
E
L
T
-----
V
L
--
Y
-
D
E
E
R
Y
D
I
V
E
-
Q
T
E
-
T
----
V
Q
V
D
L
E
G
--
P
--
R
--
G
V
L
T
-
V
F
R
F
-
A
--
R
P
S
Y
E
-------------------
V
F
V
D
-------------
L
T
---
E
A
G
E
G
S
H
T
V
D
V
E
H
R
G
F
P
G
-----
D
L
A
-
V
T
-
V
----
E
P
R
M
A
R
V
Q
L
E
E
R
-----
Q
T
V
-----
S
-
V
P
V
T
V
E
M
-
I
---
N
L
-
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
48.81
30%
36
- C5 -
-
5HQH
-
?
A:
[10-103]
---------------------------------------------------------------------------
S
E
V
I
E
N
V
P
V
K
-----
V
Y
--
Y
-
D
K
T
N
L
Y
I
S
G
-
I
P
E
-
T
----
V
T
V
T
L
S
G
P
R
S
--
I
--
V
Q
-----
S
A
-
K
A
-
Q
Q
D
F
T
-------------------
V
Y
A
D
-------------
L
K
---
N
A
S
I
G
T
Q
E
V
K
L
Q
V
K
D
V
S
D
-----
R
L
K
-
V
K
-
V
----
N
P
A
T
V
N
V
N
V
Q
E
K
-----
V
T
K
-----
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.01
19%
-60
- C5 -
-
2KQ1
-
?
A:
[9-113]
----------------------------------------------------------------------------
L
S
L
G
E
L
E
L
T
-----
V
L
--
Y
-
D
E
E
R
Y
D
I
V
E
-
Q
T
E
-
T
----
V
Q
V
D
L
E
G
P
R
G
--
V
--
L
T
V
F
---
R
F
-
A
--
R
P
S
Y
E
-------------------
V
F
V
D
-------------
L
T
---
E
A
G
E
G
S
H
T
V
D
V
E
H
R
G
-
F
P
-----
G
D
L
A
V
T
-
V
----
E
P
R
M
A
R
V
Q
L
E
E
R
-----
Q
T
V
-----
S
-
V
P
V
T
V
E
M
-----
I
N
-
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
41.44
13%
-127
* C5 *
-
2KPU
-
?
A:
[1-96]
---------------------------------------------------------------------
S
S
Q
T
L
D
R
D
P
T
L
T
L
S
L
I
-----
A
K
--
N
-
T
P
A
N
S
M
I
M
T
-
K
L
P
-
S
----
V
R
V
K
T
E
G
Y
N
P
--
S
--
I
---------
N
--
V
N
E
L
F
-------------------
A
Y
V
D
-------------
L
S
---
G
S
E
P
G
E
H
D
Y
E
V
K
V
E
P
I
P
N
-----
I
K
I
-
V
E
-
I
----
S
P
R
V
V
T
L
Q
L
E
H
H
-----
H
H
H
----
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
39.79
14%
-80
- C5 -
-
3LYW
-
?
A:
[3-86]
-----------------------------------------------------------------------------
P
T
L
T
L
S
L
I
-----
A
K
--
N
-
T
P
A
N
S
M
I
M
T
-
K
L
P
-
S
----
V
R
V
K
T
E
G
Y
N
P
--
S
---
I
-----
N
V
-----
N
E
L
F
-------------------
A
Y
V
D
-------------
L
S
---
G
S
E
P
G
E
H
D
Y
E
V
K
V
E
-
P
I
P
-----
N
I
K
-
I
V
E
I
----
S
P
R
V
V
T
L
Q
L
E
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
37.62
14%
-64
- C5 -
-
2L5N
-
?
A:
[8-92]
----------------------------------------------------------------------------
D
P
T
L
T
L
S
L
I
-----
A
K
--
N
-
T
P
A
N
S
M
I
M
T
-
K
L
P
-
S
----
V
R
V
K
T
E
G
Y
N
P
--
S
---
I
-----
N
V
-----
N
E
L
F
-------------------
A
Y
V
D
-------------
L
S
---
G
S
E
P
G
E
H
D
Y
E
V
K
V
E
-
P
I
P
-----
N
I
K
-
I
V
E
I
----
S
P
R
V
V
T
L
Q
L
E
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
37.35
20%
32
- C2 -
-
3FHC
-
NU214_HUMAN
A:
[9-405]
I
P
E
R
E
M
KDFQFRA
L
K
K
V
R
IFDSPEELP
K
E
R
S
S
L
L
A
V
S
N
KYG-
L
V
F
A
G
G
AS
G
L
Q
I
F
P
T
K
N
L
L
I
Q
N
K
P
G
D
D
P
N
K
I
V
D
K
V
Q
G
L
L
V
P
M
K
FPIH
H
L
A
--
L
-
S
C
D
N
L
T
L
S
A
-
C
M
M
-
S
SEY
G
S
I
I
A
F
F
D
V
R
T
--
F
--
S
N
E
A
-
Q
K
R
P
F
A
--
Y
H
K
L
L
KDAGGMVI
D
M
K
W
NPTVPS
M
V
A
V
C
-------------
L
A
---
D
G
S
I
A
V
L
Q
V
T
E
T
V
K
V
C
A
T
L
P
STV
A
V
T
-
S
V
-
C
W
---
S
P
K
G
K
Q
L
A
V
G
K
Q
NG
T
V
-
V
Q
Y
L
PTL
Q
E
-
K
K
V
I
P
C
P
-
P
---
F
Y
-
E
S
D
H
P
V
R
V
L
D
V
L
W
I
G
T
Y
V
F
A
I
V
Y
A
A
A
D
G
T
--
L
-----
E
T
S
--
P
----
D
---
V
V
M
A
L
L
P
K
K
E
E
K
H
P
E
I
F
V
-
N
F
MEPC
Y
G
S
C
T
ERQ
H
H
Y
Y
L
S
----------
Y
I
E
-
E
W
D
L
V
L
----------
A
A
S
A
AS
T
E
V
S
I
L
A
R
Q
S
DQI
N
W
E
S
W
L
L
E
D
-
S
S
R
A
E
L
P
V
T
-
D
K
S
D
D
S
L
P
M
G
V
V
V
D
Y
T
N
A
P
V
L
M
L
L
S
TDG
V
L
C
P
F
Y
M
I
N-----------------------------------------------------
8
HHSearch
37.09
23%
-133
- C5 -
-
2KXY
-
?
A:
[6-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-----
L
S
K
-----
S
-
V
P
V
K
L
E
L
-----
T
G
-
D
K
A
S
N
V
S
S
I
S
Y
S
-
F
D
R
G
H
V
T
I
---
V
G
S
Q
E
--
A
-----
M
D
K
--
I
----
D
---
S
I
T
V
P
V
D
I
S
-
Q
----
V
T
E
-
D
T
----
S
K
T
L
E
-------
L
K
-----------
A
---
E
G
--------------
V
T
V
--
Q
P
S
T
V
K
V
N
L
K
-----
V
T
Q
---------------------------------------------------------------------------------------------------------
14
HHSearch
33.27
17%
12
- C5 -
-
4QDY
2
?
A:
[15-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
V
P
I
D
I
R
---------
Y
N
S
D
K
Y
F
I
S
G
-
F
-
A
S
E
V
S
V
V
L
---
T
G
A
N
R
L
S
L
-----
A
S
E
--
M
QEST
R
---
K
F
K
V
T
A
D
L
T
-
D
----
A
G
V
--
G
----
T
I
E
V
P
-------
L
S
----------
I
E
D
L
P
N
G
L
------------
T
A
V
A
--
T
P
Q
K
I
T
V
K
I
G
-----
K
-
K
A
Q
K
D
K
V
K
I
V
P
E
I
D
P
S
Q
I
D
S
R
V
Q
I
E
N
--------------------------------------------------------------------------------
19
HHSearch
32.06
8%
-11
- C5 -
-
5HQH
-
?
A:
[15-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
V
P
V
K
V
-------
Y
--
Y
D
K
T
N
L
Y
I
S
G
-
I
-
P
E
T
V
T
V
T
L
---
S
G
P
R
S
--
I
-----
V
Q
S
--
A
----
K
A
Q
Q
D
F
T
V
Y
A
D
L
K
-
N
----
A
S
I
G
T
Q
----
E
V
K
L
Q
-------
V
K
----------
D
V
S
--
D
R
-
L
-----------
K
V
K
V
--
N
P
A
T
V
N
V
N
V
Q
------
E
K
V
T
K
K
-----------------------------------------------------------------------------------------------------
31
Fugue
30.95
13%
3
- C3 -
-
5C4N
1
COBK_RHOCB
D:
[1-250]
-----------------------------
M
T
R
L
L
V
L
G
G
----------------
T
T
E
A
S
R
L
A
K
T
L
A
D
Q
G
F
E
A
V
F
S
Y
A
G
A
Q
P
L
P
T
R
-----
I
G
G-
F
-
G
G
V
A
G
L
V
D
Y
-
L
T
R
-
E
G---
V
S
H
V
I
D
A
T
H
P
--
F
AA
Q
M
S
A
-
N
A
V
A
-
A
--
C
A
Q
T
G
-------------------
V
A
L
C
-------------
A
F
---
E
R
A
P
W
T
A
Q
A
G
D
R
W
T
H
V
P
D
-----
L
A
A
-
A
V
-
A
ALPQ
A
P
A
R
V
F
L
A
I
G
K
Q
HLRDF
S
A
A
----
P
Q
-
H
H
Y
L
L
R
L
V
D
---
P
P
-
E
G
P
L
P
L
P
D
A
R
A
V
-
I
A
R
G
P
F
T
V
---
Q
G
D
T
E
--
L
-----
L
R
S
ET
I
----
T
---
H
V
V
A
K
N
A
----------
G
-
G
A
----
G
A
E
A
K
-------
L
I
----------
A
A
R
-
S
L
G
L
P
V
----------
I
L
I
------------------
D
R
P
A
V
P
A
-
R
D
I
C
A
T
L
E
G
-
V
M
G
W
L
A
D
H
G
A
T
P
R
G
----------------------------------------------------------------------------
30
Fugue
29.21
21%
-
- C1 -
-
4JP0
-
?
A:
[2-381]
---------------------------
L
D
T
N
K
V
Y
E
I
S
N
HANG
L
Y
A
A
T
Y
---
L
S
L
D
D
S
G
V
S
L
M
N
K
N
D
D
---
D
I
D
D
Y
N
L
K
W
F
L
F
P
I
D
------------
D
D
Q
Y
I
I
T
S
-
Y
A
A
N
N
----
C
K
V
W
N
V
N
N
D
K
--
I
--
N
V
S
T
Y
S
S
T
N
-
S
--
I
Q
K
W
Q
-------------------
I
K
A
N
GS
S
Y
V
I
Q
S
DNG
K
V
L
T
A
G
T
G
Q
A
L
G
L
I
R
L
T
D
E
S
S
N
N
P
N
Q
Q
W
--
N
L
T
-
S
V
-
Q
----
T
I
Q
L
P
Q
K
P
I
I
D
T
-----
K
L
K
----
D
Y
-
P
K
Y
S
G
N
I
-
D
NGT
S
P
-
Q
L
M
G
W
T
L
V
P
C
I
M
-
V
N
D
P
N
I
D
K
---
N
T
Q
I
K
--
T
TP
Y
Y
I
L
K
K
--
Y
----
Q
---
Y
W
Q
R
A
V
G
S
N
V
A
----
L
R
P
-
H
E
----
K
K
S
Y
T
-------
Y
E
W
G
TEIDQKTT
I
I
N
-
T
L
G
F
Q
I
N
IDS
G
M
K
F
D
I
P
E
V
G
--
G
G
T
D
E
I
K
T
Q
L
-----
N
E
E
L
K
I
E
-
Y
S
H
E
T
K
I
M
E
-
K
Y
Q
E
Q
S
E
I
D
N
P
T
D
Q
S
M
N
S
I
G
F
L
T
I
T
S
L
E
L
Y
R
Y
NG
S
E
I
R
I
M
Q
I
Q
T
S
D
NDT
Y
N
V
T
S
Y
PN
H
Q
Q
A
L
L
L
L
T
N
HS
Y
E
E
V
E
E
I
T
NIP
K
S
T
L
I
K
L
K
K
H
22
HHSearch
28.93
10%
-458
- C4 -
-
1PI7
-
VPU_HV1LW
A:
[10-25]
---------------------------------
A
L
V
V
A
----
I
I
I
A
I
V
---
V
W
S
I
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
27.69
11%
10
- C5 -
-
2KQ1
-
?
A:
[21-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
E
R
Y
D
I
V
E
-
Q
-
T
E
T
V
Q
V
D
L
---
E
G
P
R
G
--
V
-----
L
T
V
--
F
R
F
A
R
P
---
S
Y
E
V
F
V
D
L
T
-
E
----
A
G
E
--
G
----
S
H
T
V
D
-------
V
E
----------
H
R
G
-
F
P
G
D
-
L
----------
A
V
T
V
--
E
P
R
M
A
R
V
Q
L
E
------
E
R
Q
T
V
S
-
V
P
V
T
V
E
M
I
N
-
L
-----------------------------------------------------------------------------------------
13
HHSearch
27.34
14%
23
- C5 -
-
2KXY
-
?
A:
[7-88]
-----------------------------------------------------------------------------
L
S
K
S
V
P
V
K
-----
L
E
L
T
G
D
K
A
S
N
V
S
S
I
S
Y
S
F
D
-
R
----
G
H
V
T
I
V
G
S
Q
E
--
A
--
M
D
-----
K
I
-----
D
S
I
T
-------------------
V
P
V
D
-------------
I
S
---
Q
V
T
E
-
D
T
S
K
T
L
E
L
K
--
A
E
-----
G
V
T
----
V
----
Q
P
S
T
V
K
V
N
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
26.97
31%
-21
- C4 -
-
3RFU
-
COPA_LEGPH
A:
[387-441]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
-
A
----
T
P
M
S
I
M
V
G
V
G
K
G
-----
A
Q
S
----
G
V
-
L
-----
I
-
K
---
N
A
-
E
A
L
E
R
M
E
K
V
N
T
L
-
V
V
D
K
T
G
T
L
---
T
E
G
H
P
--
K
-----
L
T
R
--
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
26.01
11%
-328
- C4 -
-
2LX0
-
?
A:
[12-29]
---------------------------------
L
V
A
L
L
----
T
F
L
A
F
G
---
F
W
L
F
K
Y
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------