@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1448: (2018-01-12 )
MMNCTPKVRQKKSNFWSVFIMKLTYDDKVQIYELRKQGYSLEKLSNKFGINNSNLRYMIKLIDRYGIEFVKKGKNRYYSPDLKQEMIHKV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------.........10........20........30..-....--.--------.40.........50........60.....---...--70.---.--......--80........90-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------MMNC
T
P
K
V
R
Q
KKSN
F
W
S
V
F
I
M
K
LTYDDK
V
Q
I
Y
E
-
L
R
K
Q--G--------Y
S
-
L
E
K
L
S
N
KFGINN
S
N
L
R
Y
M
I
K
L
I
D
R
Y
G
---
I
E
F
--
V
K
K---G--KNRYYS--P
D
L
K
Q
E
M
I
HKV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
78.57
16%
-155
- C2 -
-
6PAX
-
PAX6_HUMAN
A:
[15-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
L
P
D
S
T
R
Q
R
I
V
E
-
L
A
H
S
--
G
--------
A
R
-
P
C
D
I
S
R
I
L
Q
V
S
N
G
C
V
S
K
I
L
G
R
Y
Y
A
T
G
---
S
I
R
--
P
R
A
I
G
G
S
--
K
P
R
V
A
T
--
P
E
V
V
S
K
I
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
70.61
13%
-170
- C2 -
-
1PDN
2
PRD_DROME
C:
[15-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
L
P
N
N
I
R
L
K
I
V
E
-
M
A
A
D
--
G
--------
I
R
-
P
C
V
I
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
N
R
Y
Q
E
T
G
---
S
I
R
--
P
G
V
IGG
S
--
K
P
R
I
A
T
--
P
E
I
E
N
R
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
69.33
21%
-189
- C2 -
-
2M8E
-
?
A:
[6-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
E
I
S
Q
D
L
R
K
K
I
V
D
-
L
H
K
S
--
G
--------
S
S
-
L
G
A
I
S
K
R
L
K
V
P
R
S
S
V
Q
T
I
V
R
K
Y
K
H
H
G
---
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
65.61
25%
-112
- C2 -
-
2ELH
-
DAN_DROME
A:
[20-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
S
L
T
P
R
D
K
I
H
A
I
Q
-
R
I
H
D
--
G
--------
E
S
-
K
A
S
V
A
R
D
I
G
V
P
E
S
T
L
R
G
W
C
K
N
E
D
K
L
R
---
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
65.32
14%
-172
- C- -
-
1K78
-
PAX5_HUMAN
A:
[30-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
L
P
D
V
V
R
Q
R
I
V
E
-
L
A
H
Q
--
G
--------
V
R
-
P
C
D
I
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
E
T
G
---
S
I
K
--
P
G
V
I
G
G
S
--
K
P
K
V
A
T
--
P
K
V
V
E
K
I
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
64.23
22%
-144
- C2 -
-
1TC3
2
TC3A_CAEEL
C:
[5-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
S
D
T
E
R
A
Q
L
D
V
-
M
K
L
L
--
N
--------
V
S
-
L
H
E
M
S
R
K
I
S
R
S
R
H
C
I
R
V
Y
L
K
D
P
V
S
Y
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
63.58
27%
-67
- C2 -
-
1BF6
1
PHP_ECOLI
A:
[167-228]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
L
-
L
Q
A
H
--
G
--------
V
D
-
L
S
R
V
T
V
G
H
C
D
L
K
D
N
L
D
N
I
L
K
M
I
D
L
G
A
Y
--
V
Q
F
--
D
T
I
---
G
--
K
N
S
Y
Y
P
--
D
E
K
R
I
A
M
L
H
A
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
62.13
27%
-74
- C2 -
-
4LEF
-
PHP_ECOLI
C:
[168-229]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
L
-
L
Q
A
H
--
G
--------
V
D
-
L
S
R
V
T
V
G
H
C
D
L
K
D
N
L
D
N
I
L
K
M
I
D
L
G
A
Y--
V
Q
F
--
D
T
I
---
G
--
K
N
S
Y
Y
P
--
D
E
K
R
I
A
M
L
H
A
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
62.07
16%
-58
- C2 -
-
2ELH
-
DAN_DROME
A:
[1-87]
---------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
M
N
I
R
M
G
T
K
G
K
R
P
L
R
S
L
T
P
R
D
K
I
H
A
I
Q
-
R
I
H
D
--
G
--------
E
S
-
K
A
S
V
A
R
D
I
G
V
P
E
S
T
L
R
G
W
C
K
N
E
D
K
L
R
---
F
M
S
--
R
Q
S
---
A
--
T
D
N
L
C
A
--
D
A
L
G
D
K
M
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
56.03
16%
-23
- C2 -
-
2MLG
-
?
A:
[3-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
K
L
S
L
T
Q
L
I
L
I
R
L
-
S
N
R
G
--
C
--------
Q
T
-
L
E
E
L
E
E
F
T
Q
A
K
R
E
V
L
L
V
T
L
T
R
L
H
Q
R
G
V
I
Y
R
K
W
--
R
H
F
---
S
G
R
K
Y
R
E
Y
C
--
L
K
H
R
D
E
L
A
D
L
E
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
51.63
10%
-102
- C2 -
-
1SMT
-
SMTB_SYNE7
A:
[24-121]
-----------------------------------------------------------------------------------------------------------------------------------------
E
L
Q
A
I
A
P
E
V
A
Q
S
L
A
E
F
F
A
V
L
A
D
P
N
R
L
R
L
L
S
L
-
L
A
R
S
--
E
--------
L
C
-
V
G
D
L
A
Q
A
I
G
V
S
E
S
A
V
S
H
Q
L
R
S
L
R
N
L
R
L--
V
S
Y
--
R
K
Q
---
G
--
R
H
V
Y
Y
Q
L
Q
D
H
H
I
V
A
L
Y
Q
N
A
L
D
H
L
Q
E
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
51.17
18%
74
- C2 -
-
1HLV
-
CENPB_HUMAN
A:
[5-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
Q
L
T
F
R
E
K
S
R
I
I
Q
-
E
V
E
E
N
P
D
--------
L
R
-
K
G
E
I
A
R
R
F
N
I
P
P
S
T
L
S
T
I
L
K
N
K
R
A
I
L
---
A
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
50.33
10%
10
- C2 -
-
2RN7
-
?
A:
[4-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
R
F
S
P
E
V
R
Q
R
A
V
R
-
M
V
L
E
--
S
Q
G
E
Y
DS
Q
W
A
T
-
I
C
S
I
A
P
K
I
G
C
T
P
E
T
L
R
V
W
V
R
Q
H
E
R
D
T
---
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
48.86
26%
-3
- C1 -
-
4US3
11
?
A:
[10-450]
GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
I
L
S
F
Y
G
V
I
A
G
W
I
L
F
Y
L
F
N
Y
I
T
GQLWSAPAEG
F
G
G
F
F
E
G
F
I
A
N
P
T
------
L
P
L
F
W
Q
A
L
F
M
I
A
T
I
W
I
V
A
I
--
G
-
V
K
K
-------------
G
-
I
E
R
-
S
N
K
--
I
L
M
P
L
L
G
V
L
L
I
A
L
A
I
Y
S
---
L
T
L
GG
A
K
E
---
G
--
L
A
F
L
F
S
--
P
D
W
S
A
L
K
D
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
L
E
V
P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
L
S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F
24
HHSearch
48.76
17%
27
- C2 -
-
2COB
-
A:
[12-59]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
Y
N
S
E
I
L
E
E
A
I
S
-
V
V
M
S
G-
K
--------
M
S
-
V
S
K
A
Q
S
I
Y
G
I
P
H
S
T
L
E
Y
K
V
K
E
R
L
G
T
L
---
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.65
40%
52
- C2 -
-
3N8H
-
PANC_FRATT
A:
[204-245]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
Y
E
I
L
R
Q
D
--
D
--------
F
S
N
L
E
E
L
T
N
K
I
N
S
T
G
A
K
L
Q
Y
I
Q
K
L
N
N
R
I
F
---
L
A
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
48.45
40%
26
- C2 -
-
5HG0
-
PANC_FRATT
A:
[204-245]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
Y
E
I
L
R
Q
D
--
D
--------
F
S
N
L
E
E
L
T
N
K
I
N
S
T
G
A
K
L
Q
Y
I
Q
K
L
N
N
R
I
F
---
L
A
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.27
21%
35
- C2 -
-
2JN6
-
?
A:
[3-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
T
Y
S
E
E
F
K
R
D
A
V
A
-
L
Y
E
N
SD
G
--------
A
S
-
L
Q
Q
I
A
N
D
L
G
I
N
R
V
T
L
K
N
W
I
I
K
Y
G
S
N
H
---
N
V
Q
--
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.69
11%
-84
- C2 -
-
2K27
-
PAX8_HUMAN
A:
[12-94]
----------------------------------------------------------------------------------------------------------------------------------------------
G
L
N
Q
L
G
G
A
F
V
-
N
G
R
P
L
P
E
V
V
R
Q
R
I
V
D
-
L
A
H
Q
--
G
--------
V
R
-
P
C
D
I
S
R
Q
L
R
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
E
T
G
---
S
I
R
--
P
G
V
I
G
G
S
--
K
P
K
V
A
T
--
P
K
V
V
E
K
I
G
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
45.51
40%
40
- C2 -
-
3QTT
-
PANC_FRATT
A:
[204-245]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
Y
E
I
L
R
Q
D
--
D
--------
F
S
N
L
E
E
L
T
N
K
I
N
S
T
G
A
K
L
Q
Y
I
Q
K
L
N
N
R
I
F
---
L
A
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------