@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1552: (2018-01-14 )
MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFNTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Atome Classification :
(18 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10........20........30........-----40.---------------.......50......---..60........------70...-..--...80.....-...90....------....100.......110..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
V
-
M
E
H
L
F
K
F
L
L
L
A
P
Y
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D
N
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E
K
ANRNS
K
F
F
P
I
F
Y
Y
F
-----
Y
W
F
---------------
Y
I
P
F
Y
S
L
F
S
L
A
W
T
V
V
---
S
V
L
F
F
N
T
V
LRNV------TD
I
K
L
-
W
G
--
I
W
F
L
F
I
L
L
A
I-G
M
N
W
L
T
Y
S
C
------
F
K
E
M
F
R
L
R
Q
E
LGKSKGGRH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
70.17
23%
-48
- C3 -
-
4WIS
-
?
A:
[19-719]
----------------------------------------------------------------------------GVDFVIH
Y
K
V
P
A
A
E
R
D
E
A
E
A
G
F
V
Q
L
I
R
A
L
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A
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G
E
NE
S
L
L
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F
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A
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P
D
L
F
A
K
Q
V
Y
R
A
R
L
G
D
W
L
H
GVRVSAPHNDIAQALQDEPVV
E
A
E
R
L
R
L
I
Y
L
M
I
T
KPHNEWKHVE
S
I
F
P
L
H
S
H
S
F
N
K
E
W
I
K
K
W
S
S
KYTLE
Q
T
D
I
D
N
I
R
D
K
FG
E
S
V
A
F
Y
F
A
F
-
L
R
S
Y
F
R
F
L
V
I
P
S
A
F
G
F
G
A
W
L
L
L
G
Q
F
S
Y
--------------------------------------
L
Y
A
L
L
C
G
L
W
---
S
V
V
F
F
E
Y
W
K
K
Q
E
------
V
D
L
A
V
Q
W
G
--
V
R
---------
G
V
S
S
I
Q
Q
S
--------
R
P
E
F
E
W
E
H
E
A
E
D
P
I
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G
E
P
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K
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Y
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V
K
T
Q
LL
Q
I
P
F
A
L
A
C
V
V
A
L
G
A
L
I
V
T
C
N
S
L
E
V
F
I
N
EVYSGPG
K
Q
Y
L
G
F
L
P
T
I
F
L
V
I
G
T
P
T
I
S
G
V
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M
G
A
A
E
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N
A
M
E
NYAT
V
D
A
H
D
A
A
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I
Q
K
Q
F
V
L
N
F
M
T
S
Y
M
A
L
F
F
T
A
F
VYIPFGHIL
H
P
F
L
N
F
W
R
A
T
A
Q
T
L
T
FSEKELPTREFQINPA
R
I
S
N
Q
M
F
Y
F
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T
A
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N
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A
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E
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Q
A
F
QA
E
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R
E
E
C
T
LEEYD
V
S
G
D
Y
R
E
M
V
M
Q
F
G
Y
V
A
MFSVAWPL
A
A
C
C
F
L
V
N
N
W
V
E
L
R
S
D
A
L
K
I
A
ISSRRPI
P
W
R
T
DSIG
P
W
L
T
A
L
S
F
L
S
W
L
G
S
I
T
S
S
A
I
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Y
L
C
SNASPLKA
W
G
L
L
L
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L
F
A
E
H
F
Y
L
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Q
L
A
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R
F
V
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LDS
P
G
L
Q
K
E
R
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E
R
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K
K
R
L
L
Q
E
N
L
GQDAAAAPGIEH
S
E
K
I
T
R
E
A
L
E
E
E
A
R
Q
A
S
IEMFWQRQRG
M
Q
E
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I
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I
G
R
R
M
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E
Q
Q
L
A
A
G
18
Fugue
54.86
15%
-88
- C2 -
-
1BOU
-
PCYA_SPHPI
A:
[8-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
V
-
H
A
Y
L
A
E
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D
D
I
P
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R
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--
A
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R
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Y
N
L
N
Q
F
A
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MK
A
E
N
R
E
R
---------------
F
K
A
D
E
S
A
Y
L
D
E
W
N
L
T
---
P
A
A
K
A
A
V
L
A
R
D
Y
------
N
A
M
I
D
-
E
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GN
V
Y
F
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L
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K
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F
A
A
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M
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GMT
Q
E
E
Y
A
Q
M
M
I
D
G
G
R
S
P
A
G
V
R
SIKGGY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
53.26
17%
-159
- C3 -
-
4IKW
13
?
A:
[3-494]
SID
K
Q
Q
I
A
A
S
VPQRGFFGHPK
G
L
F
T
L
F
F
T
E
F
W
E
R
F
S
Y
Y
G
M
R
A
I
LVYYMYYEVSKGGLGLD
E
H
L
A
L
A
I
M
S
I
Y
G
A
L
V
Y
M
S
G
I
I
G
G
W
L
A
D
RVFG
T
S
R
A
V
F
Y
G
G
L
L
I
M
A
G
H
I
A
L
A
I
PGG
V
A
A
L
F
V
S
M
A
L
I
V
L
G
T
G
L
L
K
P
N
V
S
S
I
V
G
D
M
Y
KPGDDR
R
D
A
G
F
S
I
F
Y
M
G
I
N
L
G
A
F
L
A
PLV
V
G
T
A
G
M
K
YN
F
H
L
G
F
G
L
A
A
V
G
M
F
L
G
L
V
V
F
V
A
TRKKNLGLAGTYVP
N
P
L
T
P
A
E
K
K
K
A
A
A
I
M
A
V
G
A
V
V
-
I
A
V
L
L
A
I
L
I
P
N
G
W
F
T
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E
T
F
I
S
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I
L
G
I
I
I
P
I
I
Y
F
V
-----
V
M
Y
R
SPKTT
A
E
E
R
S
R
V
I
A
Y
I
P
L
F
V
A
S
A
M
F
W
A
I
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E
Q
G
S
T
I
L
A
N
Y
A
D
K
R
-------
T
Q
L
D
V
-
A
G
--
I
H
L
S
P
A
W
F
Q
S
-
L
N
P
L
F
I
I
I
L
------
A
P
V
F
A
W
M
W
V
K
L
G
K
R
Q
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I
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K
F
A
L
G
L
L
F
A
G
L
S
F
I
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I
L
V
P
G
H
L
S
GGGLVHP
I
W
L
V
L
S
Y
F
I
V
V
L
G
E
L
C
LSPV
G
L
S
A
T
T
K
L
APAAFSAQ
T
M
S
L
W
F
L
S
N
A
A
A
Q
A
I
N
A
Q
L
VRFYTPENETA
Y
F
G
T
I
G
G
A
A
L
V
L
G
L
I
L
L
A
I
A
P
R
I
G
R
L
MKG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
49.55
18%
-264
- C3 -
-
2KSF
-
KDPD_ECOLI
A:
[451-495]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
V
I
---
N
V
V
S
F
D
L
F
F
I
A
P
RGTLAV
S
D
V
Q
Y
-
L
L
--
T
F
A
V
M
L
T
V
G
L
-
V
I
G
N
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
42.80
13%
-51
- C3 -
-
2KEB
-
DPOA2_HUMAN
A:
[1-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
A
S
A
Q
Q
L
A
E
E
L
Q
I
F
G
L
D
C
E
E
A
L
I
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K
L
V
E
L
C
V
Q
Y
---------------------------------------------------------
G
Q
------
N
E
E
G
M
-
V
G
--
E
L
I
A
F
C
T
S
T
H
-
K
V
G
----
L
T
------
S
E
I
L
N
S
F
E
H
E
F
L
S
K
R
L
S
K
A
R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.83
25%
-235
- C3 -
-
5U3J
-
?
A:
[4-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
------
Q
E
L
L
E
-
L
D
--
K
W
A
S
L
W
N
W
F
D
-
I
T
N
W
L
W
Y
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
41.80
25%
-339
- C3 -
-
1SKH
-
PRIO_BOVIN
A:
[5-20]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
I
G
--
S
W
I
L
V
L
F
V
A
M
-
W
S
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
39.60
28%
-
- C3 -
-
2AP2
-
Q:
[1-14]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
Q
E
A
L
D
K
A
R
E
G
R
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
37.32
23%
33
- C3 -
-
2PCO
-
A:
[1-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
W
S
G
M
W
-------
R
R
K
L
K
K
L
R
N
A
L
K
K
K
L
K
G
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
37.06
29%
-
* C3 *
-
4DAC
-
?
A:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
Y
K
L
------
D
A
N
V
K
R
L
E
K
E
V
G
K
L
E
G
E
V
A
RL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
36.69
29%
122
- C3 -
-
4TRQ
-
SEM1_YEAST
F:
[45-58]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
E
L
K
A
E
L
D
R
Y
K
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
33.73
17%
20
- C3 -
-
2KXH
-
FUBP1_HUMAN
B:
[22-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
M
G
Y
V
N
D
A
------
F
K
D
A
L
Q
R
A
R
Q
I
A
A
K
I
G
G
D
A
GTS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
27.38
20%
75
- C3 -
-
2M7W
-
?
C:
[19-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
W
V
L
L
---
S
T
F
L
G
S
--
S
G
N
E
------
Q
E
L
L
E
-
L
D
--
K
W
A
S
L
W
N
W
F
N
-
I
T
N
W
L
W
Y
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
25.57
63%
-
- C1 -
-
2YNQ
-
?
B:
[77-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
L
-----
Y
W
I
---------------
Y
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
23.21
8%
-48
- C3 -
-
3EFF
-
?
K:
[50-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
G
A
P
G
A
Q
L
I
T
Y
P
R
A
L
-----
W
W
S
---------------
V
E
T
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
20.41
25%
-
- C3 -
-
4G6F
-
?
P:
[656-682]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
------
Q
E
L
L
E
-
L
D
--
K
W
A
S
L
W
N
W
F
D
-
I
T
N
W
L
W
Y
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
19.12
7%
251
- C3 -
-
2KV5
-
?
A:
[20-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
S
R
V
L
D
E
E
D
D
S
R
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
16.53
20%
0
- C- -
-
2AXT
-
PSBT_THEEB
T:
[1-1]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
-
I
T
Y
V
F
I
F
A
C
I
I
A
L
F
F
F
A
I
F
F
R
E
P
P
R
I
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------