@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1614: (2018-01-15 )
MNLIFEEYQFVKIGDKKYRVRSGPMIHSTPPQSVLDRDTFTIDYTDDELLDKEAVFTTH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......----...10...-.....20..--......30.----..--.....40........50........-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNL
I
F
E
----
E
Y
Q
F
V
K
IG-D
K
K
Y
R
VRSG--
P
M
IHSTP
P
Q
----
S
V--LDRD
T
F
T
I
DYTDDELLDKEAVFTTH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
57.55
24%
-139
- C- -
-
1BKB
-
IF5A_PYRAE
A:
[15-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
L
K
----
E
G
S
Y
V
V
I
D
-
G
E
P
C
R
V
V
E
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
56.03
14%
-206
- C5 -
-
2EIF
-
IF5A_METJA
A:
[13-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
L
K
----
V
G
Q
Y
V
M
I
D
-
G
V
P
C
E
I
V
D
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.22
14%
-5
- C6 -
-
3L9A
1
?
X:
[9-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
F
F
V
I
----
T
N
S
E
Y
T
F
A
-
G
V
H
Y
A
--
K
G
--
A
V
L
H
V
S
P
T
Q
KRAF
W
V
--
I
A
D
Q
E
N
F
I
K
Q
V
N
K
N
I
E
Y
V
E
K
N
A
S
P
A
FLQRIVEIYQVKFEGKNVH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
55.09
18%
48
- C6 -
-
1GH9
-
PA84_METTH
A:
[1-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
I
I
F
R
C
DCG
R
A
L
Y
S
R
E
G
-
A
K
T
R
K
C
V
C
G
--
R
T
V
N
V
K
D
R
R
----
I
F
--
G
R
A
D
D
F
E
E
A
S
E
L
V
R
K
L
Q
E
E
K
Y
G
S
C
H
FTNPSKRE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
52.96
14%
-137
- C5 -
-
1XTD
-
IF5A_LEIMU
A:
[34-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
L
K
----
K
G
G
Y
V
C
I
N
-
G
R
P
C
K
V
I
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
52.15
29%
-68
- C5 -
-
2F9H
-
?
B:
[50-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
L
A
----
E
G
D
H
L
K
I
G
-
D
T
N
Y
T
I
T
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
51.48
19%
50
- C1 -
-
4KC5
1
?
A:
[8-921]
NELANYIAVI
G
L
G
G
Y
Y
P
GADS
I
D
E
L
W
Q
N
L
A
N
GVDCMSDFPADRWDHSKIYYKNRKVLGKTTCI
N
G
S
F
I
K
DVDKFDYSYFKMP
K
V
Y
A
D
H
MS
P
E
V
R
L
F
L
Q
V
A
V
H
T
F
E
D
A
GYS
K
E
T
L
L
S
R
YNGD
V
G
V
L
L
G
T
MSND
Y
H
Y
Y
G
F
E
S
N
V
F
RG
S
M
A
S
G
S
G
M
A
T
I
P
M
T
V
S
Y
F
Y
GLT
G
P
S
L
F
I
D
TMCS
S
S
S
T
C
I
H
T
A
C
Q
M
L
K
H
DETK
M
V
L
A
G
G
L
N
L
M
YH
P
Y
T
T
V
N
T
S
Q
G
NFTSITSESVNSYGVGAD
G
T
V
I
G
E
G
I
G
A
V
L
L
K
R
L
D
R
A
I
A
D
RDQIYGVIK
G
S
A
M
T
N
AGERNGFNVPN
P
D
L
Q
T
L
A
I
R
Q
A
M
D
Q
A
KVHPSSISYIEGHGSGT
K
L
G
D
P
I
E
V
L
G
L
N
N
A
F
RWATDDKQF
C
Y
L
G
S
IKSNIGHLLAA
S
G
I
A
G
L
T
K
T
L
L
Q
F
K
H
K
Q
I
A
P
SIHSSQLNQDIDFADTP
F
V
V
P
QQLIEWRQPERIING
R
K
Q
V
F
P
R
R
A
G
L
T
S
I
A
AG
G
M
N
A
H
M
I
V
E
E
Y
P
E
P
ADSA
G
Q
I
S
EDQ
L
V
F
V
F
S
V
HKLAL
L
A
Q
N
L
T
S
F
R
D
W
L
A
S
SEAP
L
A
Q
I
A
Y
T
L
Q
VGKNNLR
N
R
L
A
I
R
C
RT
R
Q
A
L
S
R
A
L
N
A
C
I
D
GHYQSSAD
S
K
I
F
Y
R
FQESDAVQPLESDLNDPL
A
P
L
L
T
Q
W
L
N
GDSQVDWASLYA
Q
P
P
V
R
I
S
L
P
AYRFEK
T
R
C
W
Y
T
E
E
----
G
Y
E
S
S
I
V
N
-
P
L
M
F
K
N
K
L
H
--
P
L
V
A
K
N
C
S
T
----
P
Q
---
P
G
A
I
F
R
T
D
F
V
E
D
E
L
L
D
--
Y
V
Y
S
G
R
G
G
R
R
L
S
A
F
N
F
A
D
V
A
L
A
MPALASRFDG
R
T
L
S
V
S
C
A
F
EHYIADWTTVT
G
L
E
Y
R
L
F
E
IDSE
Q
L
E
L
E
F
D
F
R
R
SGE
Q
P
T
H
L
G
F
A
V
I
N
P
L
T
SDEPPLP
Q
Q
W
L
D
D
A
R
E
L
L
N
R
Q
A
L
QA
G
R
Q
L
S
A
A
E
V
S
Q
R
L
A
Q
A
GYDFAPYLDH
D
G
E
L
T
I
G
RS
G
L
V
L
K
G
R
P
P
VNRHNHYADNVQLS
P
Y
L
A
T
T
I
D
K
A
L
Y
L
L
L
D
E
L
GLPQ
G
R
V
I
V
R
N
I
E
RLCCYHTPA
G
G
F
S
V
V
L
SG
I
G
L
N
DN
E
L
S
L
S
L
L
V
L
D
EREQICVKLD
K
V
S
L
Y
L
G
K
Q
E
V
A
S
VDRKHSLLT
12
HHSearch
50.63
14%
-118
- C5 -
-
1X6O
-
?
A:
[34-58]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
L
K
----
K
G
G
Y
V
C
I
N
-
G
R
P
C
K
V
I
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
50.48
29%
-66
- C5 -
-
2F9H
-
?
A:
[50-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
L
A
----
E
G
D
H
L
K
I
G
-
D
T
N
Y
T
I
T
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.98
14%
-204
- C5 -
-
1IZ6
-
IF5A_PYRHO
C:
[10-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
L
K
----
P
G
R
Y
I
I
I
D
-
D
E
P
C
R
I
V
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
47.91
19%
-29
* C6 *
-
2LVH
-
Y059A_AFV1Y
A:
[7-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
----
V
Y
Q
C
L
R
C
G
--
L
T
F
R
T
K
K
Q
--
L
I
R
H
L
V
N
T
E
----
K
V
NP
L
S
I
D
Y
Y
Y
Q
S
F
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
47.53
10%
-122
- C5 -
-
3HKS
2
IF5A2_ARATH
A:
[32-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
I
R
----
K
G
G
H
I
V
I
K
-
N
R
P
C
K
V
V
E
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
47.05
14%
-159
- C5 -
-
1IZ6
-
IF5A_PYRHO
B:
[10-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
L
K
----
P
G
R
Y
I
I
I
D
-
D
E
P
C
R
I
V
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
46.14
10%
-162
- C5 -
-
5DLQ
-
IF5A1_HUMAN
F:
[10-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
R
----
K
N
G
F
V
V
L
K
-
G
R
P
C
K
I
V
E
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
45.02
42%
-44
- C6 -
-
2ROD
-
APR_MOUSE
B:
[17-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
L
P
P
E
F
---
A
A
Q
L
R
K
I
G
-
D
K
V
Y
C
T
W
S
A
--
P
D
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.17
23%
-98
- C4 -
-
2L8X
-
ANN2_AREMA
A:
[1-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
C
----
V
Y
A
Y
V
R
I
R
-
G
V
L
V
R
Y
R
R
C
--
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.30
31%
66
- C6 -
-
4KT6
-
?
B:
[29-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
S
D
K
E
Y
R
I
T
R
R
DS
Y
M
G
D
I
S
D
P
E
----
V
I
--
L
E
Y
G
V
Y
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
35.69
10%
-100
- C5 -
-
5J3B
-
?
B:
[15-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
F
K
----
P
G
L
K
V
M
L
D
-
S
N
P
C
S
I
M
E
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
35.46
15%
-32
- C3 -
-
1K0H
-
FII_LAMBD
A:
[75-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
----
R
G
D
T
L
T
I
G
-
E
E
N
F
W
V
D
-
R
--
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
34.54
10%
-94
- C5 -
-
5A20
-
HCP16_BPSPP
F:
[67-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
D
----
K
K
M
R
V
I
Y
R
-
G
K
I
V
T
F
I
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------