@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1615: (2018-01-15 )
MKREVISNGNDGPSQEILIFTKQIRHWILSDQVISGKRKLFFREDTPKEILDLYENIKSKLDFAYQEVYSNNGLKKYEK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------.........10........20----...------.....30----..-----....-.--.40---.........50....----....60........70-........--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------MKREVISNGNDGPSQ
E
I
L
I
F
T
----
K
Q
I
------
R
H
W
I
LSD----QV-----ISGK-
R
--
K
L
----
F
FRED
T
P
K
E
I
L
D
L
Y
E
----
N
I
K
S
K
L
D
F
A
Y
Q
E
V
Y
SN-NGLKKYEK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
69.87
28%
52
- C3 -
-
5EZN
-
?
A:
[1-331]
-----------------------------------------------------------------------------------------------------------------H
V
F
I
R
T
E
L
S
F
I
K
N
NVPCI
R
D
M
F
F
I
Y
K
R
E
L
Y
N
I
C
L
D
D
D
E
T
H
I
Y
V
Q
K
----
K
V
K
------
D
S
W
I
T
L
N
----
D
L
FKETD
L
T
G
R
-
P
--
H
I
----
F
A
Y
V
D
V
E
E
I
I
I
L
L
C
E
----
D
-
E
E
K
K
D
M
T
C
H
R
F
Y
S
N
-
D
G
-
K
E
Y
Q
N
S
E
I
T
I
S
DYILKD
K
L
L
S
S
Y
V
S
L
P
LKIEN
R
E
Y
F
L
I
C
G
V
S
P
Y
KFKKDD
I
L
C
M
A
S
HDKGETWG
T
K
I
V
I
KYDNYKLG
V
Q
Y
F
F
L
R
P
Y
I
S
KN
D
L
S
F
H
F
Y
V
GDNINN
V
K
N
V
N
F
I
E
C
T
H
E
K
DL
E
F
V
C
S
N
R
D
FLKDN
K
V
L
Q
D
V
S
T
L
ND
E
Y
I
V
S
Y
G
NDNNFA
E
C
Y
I
F
F
NNE
N
S
I
L
I
K
P
E
K
YGQ
T
T
A
G
CYG
G
T
F
V
K
IDEQ
R
T
L
F
I
Y
S
SSQG
I
Y
N
I
H
T
I
Y
Y
A
N
Y
E
3
HHSearch
54.81
27%
-240
- C7 -
-
1ZAE
-
GP167_BPPH2
B:
[73-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
V
L
D
L
Y
E
----
Q
S
N
I
R
I
P
S
D
I
I
E
D
L
V
N
-
Q
R
L
Q
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
52.64
27%
-276
- C7 -
-
2C5R
-
GP167_BPPH2
B:
[10-39]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
V
L
D
L
Y
E
----
Q
S
N
I
R
I
P
S
D
I
I
E
D
L
V
N
-
Q
R
L
Q
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.93
27%
49
- C7 -
-
4CJ1
-
DN7D_SULAC
B:
[45-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
F
T
----
Y
D
-----
D
N
G
K
-
T
G
R
G
M
----
V
P
E
K
D
A
P
K
E
L
L
D
M
L
A
----
R
A
E
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
47.60
24%
105
- C2 -
-
5TTA
-
?
A:
[36-248]
NENIPLFIN
N
S
K
I
Q
Y
D
DTPYHWPSN
V
I
S
L
T
NSSEKAIM
D
Y
E
I
T
C
L
A
Y
D
KNG
K
P
L
E
L
YWD
A
Q
N
V
A
ADGEVGSVGFSPAGVDYGIVT
G
I
S
P
V
S
PKSY
S
H
T
Y
R
KMQQSPP
Q
D
I
I
S
M
F
E
K
Q
Q
G
K
A
W
V
E
N
W
L
K
E
W
K
Q
M
E
K
E
Y
A
K
Q
N
A
I
A
P
G
K
N
Q
N
D
A
F
L
L
F
D
K
W---
K
Q
S
------
T
G
E
H
G
V
K
----
Y
I
-----
I
S
C
V
-
K
--
Q
V
----
T
F
N
-
D
G
S
V
W
K
N
S
A
Y
E
----
N
W
L
K
S
F
Q
---
G
K
E
V
S
N
-
S
V
L
E
N
Y
Y
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
46.59
30%
92
- C7 -
-
4CJ2
1
DN7D_SULAC
D:
[41-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
F
I
----
Y
D
-----
D
N
G
K
-
N
GY
G
D
----
V
T
E
K
D
A
P
K
E
L
L
D
M
L
A
----
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
46.36
18%
7
- C6 -
-
5L2X
3
PRIPO_HUMAN
A:
[1-348]
-------------------------------------------------------------------------------------------------------------M
N
R
K
W
E
A
K
L
K
Q
I
E
E
R
A
SPEE
P
P
S
I
W
R
L
F
H
R
Q
A
Q
A
F
N
F
V
K
S
C
K
E
D
V
H
V
F
A
----
L
E
C
KVGDG
Q
R
I
Y
L
V
T
T
--------------
Y
-
A
--
E
F
----
W
F
Y
Y
K
S
R
K
N
L
L
H
C
Y
E
V
IPE
N
A
V
C
K
L
Y
F
D
L
E
F
N
K
P
A
-
N
P
G
A
D
G
K
K
M
V
A
L
L
I
E
Y
V
C
K
A
L
Q
E
L
YG
V
N
C
S
AEDVL
N
L
D
SSTDEKF
S
R
H
L
I
F
QLHDVAFKD
N
I
H
V
G
N
F
L
R
K
I
L
Q
P
A
L
D
L
LPDLSFL
V
V
K
N
NMG
E
K
H
L
FVDLGVYTRN
R
N
F
R
L
YKSSKIGKRVALEVTEDNKFFPIQSKDVS
D
E
Y
Q
Y
F
L
S
S
LVSNVRFSDT
L
R
I
L
T
C
E
P-----------------------------------------------------
8
HHSearch
46.34
25%
56
- C7 -
-
1WTX
2
DN7D_SULAC
A:
[28-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
V
S
F
T
----
Y
D
-----
D
N
G
K
-
T
G
R
G
A
----
V
S
E
K
D
A
P
K
E
L
L
D
M
L
A
----
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.80
26%
86
- C7 -
-
2XIW
-
DN7D_SULAC
B:
[40-72]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
K
F
L
----
Y
N
-----
D
N
G
K
-
Y
GA
G
N
----
V
D
E
K
D
A
P
K
E
L
L
D
M
L
A
----
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
45.52
27%
-34
- C7 -
-
4CJ0
2
?
B:
[41-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
------
G
T
I
V
Q
F
T
----
Y
D
---------G
R
--
G
Y
----
V
R
E
L
D
A
P
K
E
L
L
D
M
L
A
----
R
A
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.45
26%
92
- C7 -
-
1XYI
2
DN7D_SULAC
A:
[29-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
S
F
T
----
Y
D
-----
D
N
G
K
-
T
G
R
G
A
----
V
S
E
K
D
A
P
K
E
L
L
D
M
L
A
----
R
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.42
33%
-87
- C7 -
-
4FXQ
-
CRAX_BACCE
A:
[12-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
L
P
H
E
V
L
E
L
Y
K
----
N
V
G
G
E
I
Y
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
40.52
13%
154
* C6 *
-
2N2T
-
?
A:
[1-84]
--------------------------------------------------------------------------------------------------------------------------------------M
G
Q
W
Q
I
K
I
Y
S
E
N
E
R
E
F
R
E
L
I
E
R
L
E
----
E
E
R
------
P
S
V
Q
Y
T
E
----
T
T
-----
R
N
G
R
-
R
--
Q
L
----
T
I
R
S
N
D
K
N
E
V
D
R
I
L
E
----
E
V
R
R
K
V
P
N
A
R
V
R
E
T
E
T
-
G
S
L
E
H
H
H
H
HH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
40.49
20%
75
- C6 -
-
4R4E
1
GLNR_BACSU
A:
[1-83]
-----------------------------------------------------------------------------------------------------------------------------------------
M
S
D
N
I
R
R
S
M
P
L
F
P
I
G
I
V
M
Q
L
T
ELS
A
R
Q
I
------
R
Y
Y
E
E
N
G
L
I
F
P
A
R
-----
T
E
G
N
-
R
--
R
L
----
F
S
F
H
D
V
D
K
-
L
L
E
I
K
H
----
L
I
E
Q
G
V
N
M
A
G
I
K
Q
I
L
A
-
K
A
E
A
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
35.76
15%
18
- C5 -
-
2LZ0
-
?
A:
[1-100]
------------------------------------------------------------------------------------------------------------------------------------GSHEG
E
P
V
V
G
M
D
K
S
L
F
A
G
N
T
V
I
R
E
I
T
----
V
Q
P
------
N
I
G
L
L
Y
D
----
G
M
-----
F
S
G
C
-
T
--
A
L
E
K
--
L
I
L
T
G
E
D
P
S
A
Y
S
A
G
D
----
G
L
R
D
G
A
D
F
--
L
I
C
V
P
E
-
E
A
L
D
R
Y
R
R
DYFWQTYAAW
I
Q
P
M
E
Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.09
24%
-51
- C1 -
-
1WBA
-
ALB1_PSOTE
A:
[31-83]
--------------------------------------------------------------------------------------------------------------------------------------------
D
V
V
A
T
G
N
E
N
P
-
E
D
P
L
S
I
V
----
K
S
T
------
R
N
I
M
Y
A
T
----
S
I
-----
S
S
--------------
E
D
K
T
P
P
Q
P
R
N
I
L
E
----
N
M
R
L
K
I
N
F
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
33.02
13%
-89
* C7 *
-
2D0B
-
?
A:
[135-157]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
E
A
I
K
R
I
A
P
----
A
I
M
E
T
V
P
H
A
V
T
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
28.46
26%
86
- C4 -
-
5KQ4
-
PNRC2_HUMAN
C:
[9-31]
--------------------------------------------------------------------------------------------------------------------------------------------------
S
E
P
P
S
P
S
V
L
--
P
----
K
P
P
------
S
H
W
V
P
V
S
----
F
N
-----
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
26.49
17%
94
- C6 -
-
3STQ
-
?
A:
[-12-73]
------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
N
L
K
P
Q
T
----
L
M
V
------
A
I
Q
C
V
A
A
----
R
T
-----
R
E
L
D
-
A
--
Q
L
QNDD
P
Q
N
A
A
E
L
E
Q
L
L
V
G
Y
D
----
L
A
A
D
D
L
K
N
A
Y
E
Q
A
L
G
Q
Y
S
G
L
P
P
Y
D
R
L
I
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
13.70
22%
-
- C7 -
-
4LH9
-
HETR_NOSS1
A:
[270-287]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----
E
I
I
------
R
T
W
A
D
K
Y
----
H
Q
-----
V
G
G
I
-
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------