@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1761: (2018-01-19 )
MYTKNEEELQALGERLGHLLAKNDVLILTGELGAGKTTFTKGLAKGLQISQMIKSPTYTIVREYEGRLPLYHLDVYRIEGDADSIDLDEFIFGGGVTVIEWGNLLGDALPDAYLELEILKEADGRRLNFQAKGLRAEKLLEELQYGV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------.........10........20----...-----.----.....30........40......---..50-.........60....--..-..70........--80--.....---...90........100.......110.......120.......130..-.....140.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------MYTK
N
E
E
E
L
Q
A
L
G
E
R
L
G
H
L
L-----AKN-----
D
----
V
L
I
L
TGELGAG
K
T
T
F
T
K
G
L
A
K
G
L
---
Q
I
S
--
Q
M
IKSP
T
Y
T
I
V
R
EYE--GR-L
P
L
Y
H
L
D
V
Y
R
IE--GD--ADSI
D
---
L
D
E
FIFGG
G
V
T
V
I
E
W
G
N
L
L
G
D
AL
P
D
A
Y
L
E
L
E
I
L
KEADG
R
R
L
N
F
QAKGL-
R
A
E
K
L
L
E
E
L
QYGV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
Fugue
71.23
28%
61
* C2 *
-
1HTW
1
TSAE_HAEIN
A:
[1-158]
----------------------------------------------------------------------M
E
S
L
T
Q
Y
I
P
D
E
F
S
M
L
R
F
G
K
K
F
A
E
I
L
-----
L
K
L
HTE
K
A
I
----
M
V
Y
L
N
G
D
L
G
A
G
K
T
T
L
T
R
G
M
L
Q
G
I
---
G
H
Q
--
G
N
V
K
S
P
T
Y
T
L
V
E
E
Y
N
I
-
A
G
-
K
M
I
Y
H
F
D
L
Y
R
L
A
DP
E
E
--
L
E
F
M
G
---
I
R
D
Y
F
N
T
D
S
I
C
L
I
E
W
S
E
K
G
Q
G
I
L
P
E
A
D
I
L
V
N
I
D
Y
Y
D
D
A
R
N
I
E
L
I
A
Q
T
N
-
L
G
K
N
I
I
S
A
F
S
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
68.82
29%
-39
- C2 -
-
1HTW
1
TSAE_HAEIN
A:
[23-157]
---------------------------------------------------------------------------------------
E
I
L
L
K
L
H
T
-----
E
K
A
-----
I
----
M
V
Y
L
N
G
D
L
G
A
G
K
T
T
L
T
R
G
M
L
Q
G
I
---
G
H
Q
--
G
N
V
K
S
P
T
Y
T
L
V
E
E
Y
N
I
-
A
G
-
K
M
I
Y
H
F
D
L
Y
R
L
A
--
D
P
E
E
L
E
F
M
G
---
I
R
D
Y
F
N
T
D
S
I
C
L
I
E
W
S
E
K
G
Q
G
I
L
P
E
A
D
I
L
V
N
I
D
Y
Y
D
D
A
R
N
I
E
L
I
A
Q
T
N
-
L
G
K
N
I
I
S
A
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.13
30%
44
- C2 -
-
1HTW
1
TSAE_HAEIN
A:
[7-145]
----------------------------------------------------------------------------
Y
I
P
D
E
F
S
M
L
R
F
G
K
K
F
A
E
I
L
L
K
L
HT
E
K
A
-----
I
----
M
V
Y
L
N
G
D
L
G
A
G
K
T
T
L
T
R
G
M
L
Q
G
I
---
G
H
Q
--
G
N
V
K
S
P
T
Y
T
L
V
E
E
Y
N
I
A
G
K
-
M
-
I
Y
H
F
D
L
Y
R
L
---
A
D
--
P
E
E
L
E
F
MG
I
R
D
Y
F
N
T
D
S
I
C
L
I
E
W
S
E
K
G
Q
G
I
L
P
E
A
D
I
L
V
N
I
D
Y
Y
D
D
A
R
N
I
E
L
I
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.14
30%
30
- C2 -
-
1FL9
-
TSAE_HAEIN
A:
[10-148]
----------------------------------------------------------------------------
Y
I
P
D
E
F
S
M
L
R
F
G
K
K
F
A
E
I
L
L
K
L
HT
E
K
A
-----
I
----
M
V
Y
L
N
G
D
L
G
A
G
K
T
T
L
T
R
G
M
L
Q
G
I
---
G
H
Q
--
G
N
V
K
S
P
T
Y
T
L
V
E
E
Y
N
I
A
G
K
-
M
-
I
Y
H
F
D
L
Y
R
L
---
A
D
--
P
E
E
L
E
F
MG
I
R
D
Y
F
N
T
D
S
I
C
L
I
E
W
S
E
K
G
Q
G
I
L
P
E
A
D
I
L
V
N
I
D
Y
Y
D
D
A
R
N
I
E
L
I
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
47.75
58%
-194
- C3 -
-
3A4N
1
PSTK_METJA
B:
[6-44]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
Fugue
45.75
19%
44
- C2 -
-
3M6A
1
LON1_BACSU
A:
[7-531]
TGEVQ
T
L
T
E
K
I
E
EAGMPDHVK
E
T
A
L
K
E
L
N
R
YEKIPSSS
A
E
S
S
V
IRN
Y
I
D
W
L
V
A
LPWTDETD
D
K
L
D
LKE
A
G
R
L
L
D
E
E
H
H
G
L
E
K
V
K
E
R
I
L
E
Y
L
A
V
Q
K
-----
L
T
K
-----
S
LKGP
I
L
C
L
A
G
P
P
G
V
G
K
T
S
L
A
K
S
I
A
K
S
L
G
R
K
F
V
R
--
I
S
L
G
G
R
I
I
Q
G
M
K
K
A
G
--
K
L
-
N
P
V
F
L
L
D
E
I
D
K
M
--
S
A
--
M
L
E
V
L
---
D
P
E
Q
---------------
N
S
S
F
S
D
H
Y
I
E
E
T
----
F
D
L
S
K
V
L
F
I
A
T
A
N
-
N
L
A
T
I
P
G
P
L
R
D
R
M
E
I
I
N
I
A
G
Y
T
E
I
E
K
L
E
I
V
K
DH
L
L
P
K
Q
I
K
E
H
GLKKSN
L
Q
L
R
D
Q
A
I
L
D
I
I
R
Y
YTREAGV
R
S
L
E
R
Q
L
A
A
I
C
R
K
A
A
K
A
I
V
AEERK
R
I
T
V
T
EKNLQDFIGKRIFRYGQA
E
T
E
D
Q
V
G
V
V
T
G
L
A
Y
T
TV
G
G
D
T
L
S
I
E
V
S
L
S
P
G
K
G
K
L
I
L
T
G
KLG
D
V
M
R
E
S
A
Q
A
A
F
S
Y
V
R
S
KTEELGIEPDFHEK
Y
D
I
H
I
H
V
P
E
GAVPKDGPAA
G
I
T
M
A
T
A
L
V
S
A
L
T
GRAVSRE
V
G
M
T
G
E
I
T
LRG
R
V
L
P
I
G
G
L
K
E
K
A
L
G
A
H
R
A
GLT
T
I
I
A
P
KDNEKDIEDIP
E
S
V
R
E
G
LT
F
I
L
A
SH
L
D
E
V
L
E
H
A
L
V
7
PsiBlast_PDB
45.60
58%
-190
- C3 -
-
3A4L
2
PSTK_METJA
A:
[6-43]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
45.42
58%
-209
- C3 -
-
3A4N
-
PSTK_METJA
A:
[6-43]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
44.92
50%
-213
- C3 -
-
3VAA
1
AROK_BACTN
A:
[28-51]
------------------------------------------------------------------------------------------------------------------
I
F
L
T
G
Y
M
G
A
G
K
T
T
L
G
K
A
F
A
R
K
L
---
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
44.12
58%
-182
- C3 -
-
3A4M
2
PSTK_METJA
B:
[6-43]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
43.72
50%
-226
- C3 -
-
3ADC
1
PSTK_METJA
B:
[13-51]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
K
N
--
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
43.22
58%
-171
- C3 -
-
3A4L
1
PSTK_METJA
B:
[6-44]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
78
Fugue
42.72
16%
-12
- C2 -
-
4WIA
1
FLAH_METJA
A:
[5-233]
---------------------------------------------------------------------------
E
L
A
R
I
D
L
S
R
D
D
L
D
K
R
I
G
G
G
I
-----
P
H
G
-----
S
----
L
I
I
I
E
G
E
E
S
T
G
K
S
V
L
C
Q
R
L
A
Y
G
F
---
L
Q
N
R
Y
S
V
T
Y
V
S
T
Q
L
T
T
L
E
F
I
--
K
Q
M
N
S
L
-----------------
N
Y
S
---
I
N
K
K
L
L
S
G
A
L
L
Y
I
P
---------------
V
Y
P
L
I
A
D
N
K
K
K
D
G
F
L
K
K
-
V
M
E
T
R
A
F
Y
E
K
D
V
I
I
F
DS
I
S
A
L
I
A
N
DASEVN
V
D
D
L
M
A
F
F
K
R
I
T
A
L
K
K
I
I
I
C
T
V
NPKELP
E
S
V
L
T
I
I
R
T
S
AT
M
L
I
R
T
E
L
F
T
F
GG
D
L
K
N
L
A
K
ILKYNMAPGSYQK
N
I
V
F
R
V
E
P
KIGIAVEIASVA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.01
58%
-161
- C3 -
-
3A4M
2
PSTK_METJA
A:
[6-43]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
41.23
53%
-163
- C3 -
-
4LOA
-
?
A:
[3-37]
----------------------------------------------------------------------------------------------
L
-----
A
K
N
-----
I
----
V
F
I
--
G
E
S
G
S
G
K
S
T
L
A
R
A
L
A
K
D
L
---
D
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
Fugue
40.86
15%
16
- C2 -
-
3U61
1
DPA44_BPT4
C:
[5-323]
-----------------------------------------------------SMITVNEKEHILEQKYRPSTID
E
C
I
L
P
A
F
D
K
E
T
F
K
S
I
T
S
K
G
K
-----
I
P
H
----------
I
I
L
H
S
P
S
P
G
T
G
K
T
T
V
A
K
A
L
C
H
D
V
---
N
A
D
--
M
M
F
V
N
G
S
D
C
K
I
D
F
V
R
--
G
P
-
L
T
N
F
A
S
A
A
----------------------
S
F
D
G
R
Q
K
V
I
V
I
D
E
F
D
R
S
G
L
A
E
S
Q
R
H
L
R
S
F
M
E
A
Y
S
S
N
C
S
I
I
I
T
A
N
-
N
I
D
G
I
I
K
P
L
Q
S
R
C
R
V
I
T
F
GQPT
D
E
D
K
I
E
M
M
K
Q
M
I
R
R
L
T
E
I
C
K
H
E
GIAIADM
K
V
V
A
A
L
V
K
K
N
FPD
F
R
K
T
I
G
E
L
D
S
Y
SSKGVLD
A
G
I
L
S
L
V
T
N
D
RGAI
D
D
V
L
E
S
L
K
N
KDV
K
Q
L
R
A
L
A
P
K
Y
AAD
Y
S
W
F
V
G
K
L
A
E
E
I
Y
S
R
V
T
P
Q
S
I
I
R
M
Y
E
I
V
G
E
N
N
Q
Y
HGIAAN
T
E
L
H
L
A
Y
L
F
I
Q
L
A
C
E
MQW------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
40.69
58%
-168
- C3 -
-
3AM1
1
PSTK_METJA
A:
[6-43]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
40.44
50%
-212
- C3 -
-
3ADD
1
PSTK_METJA
B:
[13-51]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
K
N
--
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
HHSearch
39.97
24%
-194
- C3 -
-
5C78
1
PGLK_CAMJE
D:
[362-402]
------------------------------------------------------------------------------------
K
Y
L
F
K
N
L
N
L
N
I
-----
K
K
G
-----
E
----
K
I
A
F
I
G
E
S
G
C
G
K
S
T
L
V
D
L
I
I
G
L
L
---
K
P
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
39.29
50%
-207
- C3 -
-
3ADC
1
PSTK_METJA
A:
[13-44]
-----------------------------------------------------------------------------------------------------------------
L
I
I
L
T
G
L
P
G
V
G
K
S
T
F
S
K
N
L
A
K
I
L
---
S
K
N
--
N
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------