@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1772: (2018-01-19 )
MSQKMNHLDVGEFVLLLPEHLRSEEEHYKSVFEDDLTSRISSQDERQQMTATVGYLESGQDRFVYNTTPISYQQFLKDPIIIVITPQSTGPQSILFWIDAVQNYVLFNQLSDAQELIQRQGIENWVSEMQTGYHNYITLLDNIQRERWVMLAGAVLGIATSILLFNTMNRLYFEEFRRAIFIKRIAGLRFLEIHRTYLFAQLGVFLLGFVASVFLQVEIGVAFLVLLLFTGLSLLQLHVQMQKENKMSMLVLKGG
Atome Classification :
(14 SA)
--------------------------------------------------------------------------------------......---...10----------........20....----....30........40........50.......--.60.......--.70......---..-----80-----.........90..--.....---.100.......110.-------------------------------......120.------......130...----.---------...140........150.......160--........170...-----------....180..------..-..----.190-----------------------........200..---------...---------..--------210.......-------220----------........230.........240--------------.........250...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------MSQKMN---HL
D
V
G
----------
E
F
V
L
L
L
P
E
H
L
R
S
E
E
----
E
H
Y
K
S
V
F
E
D
D
L
T
S
R
IS
S
Q
D
E
R
Q
Q
M
T
A
T
VGYLES--GQ
D
R
F
V
Y
NTT--PI
S
Y
Q
Q
FLK---D
P
-----
I
------
I
I
V
I
TPQSTGP
Q
S
--
I
L
F
W
I
---
D
A
V
Q
N
Y
V
L
F
NQL
S
D
A
-------------------------------
Q
E
L
I
Q
R
Q
G
I
E
------
N
W
V
S
E
M
Q
T
G
Y
H
N
----
Y
---------
I
T
L
L
-
D
NI
Q
R
E
R
W
V
M
L
A
G
A
V
L
G
I
A
T
S
---
I
L
L
F
N
T
M
N
R
L
Y
F
E
E
-----------
F
R
R
A
I
F
I
K
R
------
I
A-G
L
----
R
F
L
------------------------
E
I
H
R
T
Y
L
F
A
Q
L
G
V
---------
F
L
L
---------
G
F
--------
V
A
S
V
F
L
Q
V
E
I
-------
G
V
-----------
A
F
L
V
L
L
L
F
T
--
G
L
S
L
L
Q
L
H
V
Q
----------------
M
QKENK
M
S
M
L
V
L
KGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
76.08
19%
-31
* C6 *
-
5HC3
-
?
A:
[22-365]
--------------------------------------------------------------------------------------
M
T
N
K
I
A
EDP
R
I
D
-
P
----------
R
I
K
A
I
F
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G
M
D
L
G
G
G
----
G
D
V
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--
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E
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M
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---
E
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------
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Y
I
R
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D
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Y
Y
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R
A
W
-------------------------------
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I
A
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A
------
V
A
M
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F
R
N
A
L
V
P
----
S
ALP
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Y
P
A
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N
-
D
C
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V
A
A
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A
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A
S
---
R
I
I
I
A
G
E
S
G
G
G
N
L
T
-----------
L
A
A
G
L
R
L
K
Q
E
GSQDL
I
Q
-
G
L
----
Y
A
L
CPYIAGSWPSEDS
P
S
S
T
E
N
NGILL
D
L
H
N
N
Q
G
A
M
G
Y
G
I
---------
E
A
Y
E
M
RDPLAWP
G
F
ATEEDVSG
L
V
P
T
F
I
S
V
N
E
CDPL
R
D
E
G
I
-----------
N
F
Y
R
L
L
L
R
A
--
G
V
S
A
K
C
R
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M
GTIHGTEIFPIAC
P
D
V
S
R
D
T
A
A
S
I
A
N
F
C
K
G
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
58.45
17%
-22
- C2 -
-
1NA6
-
T2E2_ECOLX
A:
[4-398]
---------------------------------------------------------------------S
V
F
H
N
W
L
L
E
I
A
C
EN
Y
F
V
Y
I
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R
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---
A
N
D
T
G
ATQVGLYIP
S
G
I
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E
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F
P
S
I
N
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R
----
E
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N
P
S
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F
---
L
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---
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A
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A
PVNHKYILP
E
D
W
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L
R
F
P
S
G
------
S
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I
I
Q
Y
A
A
S
H
Y
D
----
P
---------
D
E
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-
L
D
R
R
R
V
E
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I
F
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E
L
H
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D
---
I
I
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K
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F
G
S
V
D
E
F
I
A
-----------
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A
N
S
V
S
N
R
R
------
K
S
R
A
G
----
K
S
L
------------------------
E
L
H
L
E
H
L
F
I
E
H
G
L
RHFATQAPD
F
L
F
---------
P
S
--------
A
G
A
Y
H
P
L
R
M
L
-------
A
V
K
TTCKDRWRQI
L
N
H
L
F
T
L
Q
E
--
G
V
S
--
L
A
Q
Y
R
----------------
E
M
R
E
S
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V
R
L
V
V
P
S
S
L
HKKYPEAVRAELMT
L
G
A
F
I
A
E
L
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
54.31
16%
-139
- C6 -
-
5JKI
5
YODM_BACSU
A:
[20-220]
-------------------------------------------------------------------------------------------
M
---
Y
K
P
V
S
----------
L
F
L
F
F
L
I
L
A
A
A
I
H
----------------
T
N
A
V
Q
S
A
D
E
A
I
S
K
A
A
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L
-
I
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Q
P
--
W
L
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I
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--
H
L
G
A
S
S
F
L
L
---
P
L
-----
I
------
V
I
I
-------
G
A
G
--
M
F
F
Y
R
---
K
T
W
D
G
L
L
M
L
L
V
F
G
T
D
-------------------------------
R
L
L
--
N
K
V
L
K
------
E
W
I
E
R
V
R
P
D
F
A
P
----
L
---------
V
-------
H
E
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M
N
A
A
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Y
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F
L
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K
H
L
P
F
L
S
K
-----------
H
K
K
M
V
Y
I
I
A
------
G
V
-
I
A
----
V
L
V
------------------------
G
I
S
R
V
Y
L
G
V
H
--------------------------------------
F
V
T
D
V
L
-------
G
G
-----------
F
S
L
G
L
L
L
F
F
--
L
V
K
G
F
D
E
K
I
K
----------------
R
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
48.78
14%
-47
* C5 *
-
4WRT
-
?
C:
[9-258]
---------------------------------------------------------------------------------------
G
M
T
L
A
---
K
I
E
L
L
----------
K
Q
L
L
R
D
N
E
A
K
T
V
L
K
QTTV
D
Q
Y
N
I
I
R
K
F
N
T
S
R
I
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K
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L
R
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A
M
C
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N
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--
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M
A
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I
--
P
L
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Y
K
G
-------------
I
------
Q
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N
A
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I
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T
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G
--
Q
M
C
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I
---
A
A
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T
W
W
N
T
Y
G
P
I
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D
--------------------------------
T
E
G
F
E
R
V
Y
E
S
------
F
F
L
R
K
M
R
L
D
N
A
T
----
W
---------
G
R
I
T
F
G
P
V
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R
V
R
K
R
V
L
L
N
P
L
T
K
E
M
P
P
---
D
E
A
S
N
V
I
M
E
I
L
F
--------------
P
K
E
A
G
I
P
R
------
E
S
-
T
W
----
I
H
R
------------------------
E
L
I
K
E
K
R
E
K
L
K
G
T
---------
M
I
T
---------
P
I
--------
V
L
A
Y
M
L
E
R
E
L
V
A
-----
R
R
-----------
R
F
L
P
V
A
G
A
T
--
S
A
E
F
I
E
M
L
H
C
----------------
L
Q
G
E
N
--
W
R
Q
I
Y
H
P
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
48.75
19%
6
- C4 -
-
4UFC
1
?
A:
[21-807]
DL
K
L
W
Y
SQPAQNWSE
A
L
P
I
G
NSR
L
G
A
M
V
YGGIE
R
E
E
L
Q
L
N
E
ETFWAGSPYNNNNP
N
A
V
H
V
L
P
V
V
R
K
L
I
F
E
GR
N
K
E
A
Q
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I
D
A
NFLT
Q
Q
H
G
M
S
---
Y
L
T
L
G
----------
S
L
Y
L
E
F
P
E
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N
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S
G
----------
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Y
R
D
L
N
------------------
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E
N
--
A
T
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T
R
Y
Q
V
D
--
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V
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Y
T
R
T
T
F
ASF
T
D
-----
N
------
V
I
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M
H
I
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A
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K
A
N
A
--
L
N
F
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I
---
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Y
N
C
P
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H
K
V
N
V
Q
N
D
-------------------------------
Q
L
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C
Q
G
K
E
Q
EGLKA
A
L
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A
E
C
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I
Q
V
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T
----
N
---------
G
T
L
R
-
P
A
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I
N
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E
A
T
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Y
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A
A
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A
D
E
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T
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Y
L
K
R
------
A
M
-
Q
I
P
Y
E
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K
A
L
------------------------
K
N
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I
A
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D
R
---------
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R
L
---------
T
L
--------
P
A
G
K
A
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L
E
T
-------
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I
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N
F
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N
G
E
--
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M
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M
A
A
L
L
F
H
----------------
Y
G
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Y
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G
Q
PANLQGIWNNSTHAPWDSKYTINI
N
T
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N
Y
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L
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D
L
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A
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R
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H
HNTDLWRICGVVDFAAAGMWPS
G
G
A
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I
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L
F
T
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K
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Y
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D
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LVEHPVYK
W
L
V
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PSVSPEHGPITAGC
T
M
D
N
Q
I
A
F
D
A
L
H
N
T
L
L
A
S
Y
I
A
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P
S
F
Q
D
S
L
K
Q
T
L
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L
P
P
M
Q
I
G
KHNQLQEWLEDIDNPKDEHRHISHLYGLYPSNQISPYSN
P
E
L
F
Q
A
A
R
N
T
L
L
Q
R
GDKAT
G
W
S
I
G
W
K
V
N
F
W
A
R
M
LD
G
N
H
A
F
Q
I
I
K
N
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IQLLPNDHLAKEYPNGRTYPNMLDAHPPFQI
D
G
N
F
G
Y
T
A
G
V
A
E
M
L
LQSHDGAVHLLPALPDAWE
E
G
S
V
K
GLVARGN
F
T
V
D
M
D
W
K
NNVLN
K
A
I
I
R
S
NIG
S
T
L
R
I
R
S
Y
V
P
L
K
GKG
L
K
Q
V
N
GKECSNRLF
A
T
T
P
I
K
Q
P
L
V
A
K
GVS
A
Q
S
P
K
L
Q
K
V
Y
E
Y
D
I
ETKAG
K
T
Y
I
V
N
T
I
8
Fugue
47.62
14%
-17
* C7 *
-
4PWO
1
?
A:
[1-250]
-------------------------------------------------------------------------------------------------------------------------
T
Q
A
----
E
K
T
A
T
D
L
P
P
G
F
S
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K
A
G
S
V
N
A
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P
G
T
K
G
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D
G
P
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P
L
--
A
D
G
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F
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A
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I
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P
A
K
E
L
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S
A
---
D
D
-----
I
------
L
N
V
H
R
R
N
A
K
D
P
------
F
A
V
---
G
A
V
D
A
P
L
V
I
T
E
F
S
D
F
-------------------------------
E
C
P
F
C
A
R
W
S
N
------
Q
T
E
P
T
L
M
E
E
Y
V
S
KGL
V
R
---------
I
E
W
N
-
D
L
P
V
N
G
E
H
A
L
A
A
A
K
A
G
R
A
A
A
A
---
Q
G
K
F
D
E
F
R
K
A
L
F
E
A
S
R
NVSGHPNNT
L
K
D
F
E
R
F
A
R
------
N
A
-
G
V
KD
M
E
R
F
S
------------------------
R
E
A
Q
D
S
T
Y
D
E
V
L
A
---------
K
A
A
---------
D
Y
--------
A
H
G
--
L
G
V
S
G
-------
T
P
-----------
A
F
V
V
G
T
Q
Y
I
S
G
A
Q
P
T
E
E
F
I
K
V
----------------
I
E
S
E
L
K
K
S
P
T
F
S
T
P
S
SH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
33.25
21%
-203
- C8 -
-
5NIL
-
?
K:
[528-584]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
V
I
S
L
V
V
G
---
G
I
G
V
M
N
I
M
L
V
S
V
T
E
-----------
R
T
R
E
I
G
I
R
M
------
A
V
-
G
A
----
R
A
S
------------------------
D
V
L
Q
Q
F
L
I
E
A
V
L
V
---------
C
L
V
---------
G
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
31.99
21%
-213
- C8 -
-
5X5Y
-
?
G:
[75-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
T
L
A
-----------
S
N
S
E
L
T
I
M
R
------
A
A
-
G
V
----
S
L
S
------------------------
R
I
V
W
A
V
M
K
P
M
L
V
L
---------
M
L
A
---------
G
I
--------
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
26.37
50%
-47
- C1 -
-
2XQ1
-
CATA_PICAN
A:
[125-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
K
F
Y
T
E
D
--
G
N
L
D
L
V
Y
N
N
T
--
P
I
F
---
F
I
R
---
D
P
-----
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
23.89
12%
-177
- C8 -
-
5X5Y
-
?
F:
[75-128]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
G
R
L
Y
-----------
L
E
S
E
M
T
V
L
S
------
A
T
-
G
M
----
S
Q
K
------------------------
R
L
L
G
Y
T
M
A
P
A
L
L
V
---------
A
I
L
---------
V
A
--------
W
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
21.83
18%
171
- C5 -
-
5L6N
-
?
I:
[12-35]
-------------------------------------------------------------------------------------------------------------------------
D
D
E
----
E
E
D
G
T
T
P
T
P
D
P
T
A
P
T
A
K
P
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
14.27
30%
10
- C3 -
-
2LNY
-
?
A:
[1-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
A
V
A
G
L
Y
G
L
--
G
E
D
R
Q
H
R
K
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
14.06
12%
-50
* C8 *
-
5LDD
-
?
D:
[28-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
K
G
-----------
K
L
K
H
Y
L
I
L
S
------
S
A
-
G
K
----
P
I
W
------------------------
S
R
H
G
D
L
S
L
V
N
S
T
M
---------
G
V
V
---------
Q
T
--------
I
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
8.36
31%
131
- C7 -
-
5KX1
-
?
A:
[1-22]
-------------------------------------------------------------------------------------------------------------------
N
P
E
D
C
R
Q
D
P
----
E
A
N
K
S
P
E
E
C
K
K
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------