@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1853: (2018-01-21 )
MKKNFRVKREKDFKAIFKEGTSFANRKFVVYQLENQKNHFRVGLSVSKKLGNAVTRNQIKRRIRHIIQNAKGSLVEDVDFVVIARKGVETLGYAEMEKNLLHVLKLSKIYREGNGSEKETKVD
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30.....-.-.-.40........-50-........60........70........80.......----.90........100.......110.......120.----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKNFRV
K
R
E
K
D
F
K
A
I
F
K
EGTSFAN
R
K
F
V
V
Y
Q
LENQ-K-
N
-
H
F
R
V
G
L
S
V
S
K
K
-LG-N
A
V
T
R
N
Q
I
K
R
R
I
R
H
I
I
Q
NAKGSLVEDV
D
F
V
V
I
ARKG
V
----
E
TL
G
Y
A
E
M
E
K
N
L
L
H
V
L
K
L
S
K
I
Y
REGNGSEKETKVD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
82.66
38%
-143
- C4 -
-
3Q1R
-
RNPA_THEMA
A:
[21-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
E
G
K
S
L
Q
N
E
Y
F
V
V
L
F
R
K
N
G
-
L
-
D
-
Y
S
R
L
G
I
V
V
K
R
K
-
F
G
-
K
A
T
R
R
N
K
L
K
R
W
V
R
E
I
F
R
R
N
K
G
V
I
P
K
G
F
D
I
V
V
I
P
R
K
K
L
S
E
E
F
E
R
V
D
F
W
T
V
R
E
K
L
L
N
L
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
82.66
38%
-143
- C4 -
-
3Q1Q
-
RNPA_THEMA
A:
[21-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
E
G
K
S
L
Q
N
E
Y
F
V
V
L
F
R
K
N
G
-
L
-
D
-
Y
S
R
L
G
I
V
V
K
R
K
-
F
G
-
K
A
T
R
R
N
K
L
K
R
W
V
R
E
I
F
R
R
N
K
G
V
I
P
K
G
F
D
I
V
V
I
P
R
K
K
L
S
E
E
F
E
R
V
D
F
W
T
V
R
E
K
L
L
N
L
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
82.40
38%
-140
- C4 -
-
1NZ0
-
RNPA_THEMA
A:
[21-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
F
K
E
G
K
S
L
Q
N
E
Y
F
V
V
L
F
R
K
N
G
-
M
-
D
-
Y
S
R
L
G
I
V
V
K
R
K
-
F
G
-
K
A
T
R
R
N
K
L
K
R
W
V
R
E
I
F
R
R
N
K
G
V
I
P
K
G
F
D
I
V
V
I
P
R
K
K
L
S
E
E
F
E
R
V
D
F
W
T
V
R
E
K
L
L
N
L
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
79.10
36%
-111
- C4 -
-
1NZ0
-
RNPA_THEMA
A:
[10-117]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
L
R
L
R
R
D
F
L
L
I
F
K
E
G
K
S
L
Q
N
E
Y
F
V
V
L
F
R
K
N
G
-
M
-
D
-
Y
S
R
L
G
I
V
V
K
R
K
-
F
G
-
K
A
T
R
R
N
K
L
K
R
W
V
R
E
I
F
R
R
N
K
G
V
I
P
K
G
F
D
I
V
V
I
P
R
K
K
L
S
E
E
F
E
R
V
D
F
W
T
V
R
E
K
L
L
N
L
L
K
R
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.06
50%
-9
- C4 -
-
1A6F
-
RNPA_BACSU
A:
[4-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
R
N
R
L
K
K
N
E
D
F
Q
K
V
F
K
H
G
T
S
V
A
N
R
Q
F
V
L
Y
T
L
D
Q
P
-
E
-
N
D
E
L
R
V
G
L
S
V
S
K
K
-
I
G
-
N
A
V
M
R
N
R
I
K
R
L
I
R
Q
A
F
L
E
E
K
E
R
L
K
E
K
-
D
Y
I
I
I
A
R
K
P
A
----
S
Q
L
T
Y
E
E
T
K
K
S
L
Q
H
L
F
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
78.93
47%
1
* C4 *
-
4JG4
3
RNPA_BACSU
A:
[4-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
R
N
R
L
K
K
N
E
D
F
Q
K
V
F
K
H
G
T
S
V
A
N
R
Q
F
V
L
Y
T
L
D
Q
A
E
N
-
D
-
E
L
R
V
G
L
S
V
S
K
K
-
I
G
-
N
A
V
M
R
N
R
I
K
R
L
I
R
Q
A
F
L
E
E
K
E
R
L
K
-
E
K
D
Y
I
I
I
A
R
K
A
A
----
S
Q
L
T
Y
E
E
T
K
K
S
L
Q
H
L
W
R
K
S
S
L
Y
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
78.26
50%
-8
- C4 -
-
4JG4
3
RNPA_BACSU
A:
[4-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
K
R
N
R
L
K
K
N
E
D
F
Q
K
V
F
K
H
G
T
S
V
A
N
R
Q
F
V
L
Y
T
L
D
Q
A
-
E
-
N
D
E
L
R
V
G
L
S
V
S
K
K
-
I
G
-
N
A
V
M
R
N
R
I
K
R
L
I
R
Q
A
F
L
E
E
K
E
R
L
K
E
K
-
D
Y
I
I
I
A
R
K
A
A
----
S
Q
L
T
Y
E
E
T
K
K
S
L
Q
H
L
W
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
74.65
45%
-0
- C4 -
-
1D6T
-
RNPA_STAAU
A:
[3-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
K
A
Y
R
I
K
K
N
A
D
F
Q
R
I
Y
K
K
G
H
S
V
A
N
R
Q
F
V
V
Y
T
C
N
N
K
E
I
-
D
-
H
F
R
L
G
I
S
V
S
K
K
-
L
G
-
N
A
V
L
R
N
K
I
K
R
A
I
R
E
N
F
K
V
H
K
S
H
I
L
-
A
K
D
I
I
V
I
A
R
Q
P
A
----
K
D
M
T
T
L
Q
I
Q
N
S
L
E
H
V
L
K
I
A
K
V
F
N
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
71.96
45%
-5
- C4 -
-
1D6T
-
RNPA_STAAU
A:
[3-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
K
A
Y
R
I
K
K
N
A
D
F
Q
R
I
Y
K
K
G
H
S
V
A
N
R
Q
F
V
V
Y
T
C
N
N
K
-
E
I
D
-
H
F
R
L
G
I
S
V
S
K
K
-
L
G
-
N
A
V
L
R
N
K
I
K
R
A
I
R
E
N
F
K
V
H
K
S
H
I
L
A
K
-
D
I
I
V
I
A
R
Q
P
A
----
K
D
M
T
T
L
Q
I
Q
N
S
L
E
H
V
L
K
I
A
K
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
60.57
27%
-22
- C4 -
-
2LJP
-
RNPA_ECOLI
A:
[6-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
R
E
L
R
L
L
T
P
S
Q
F
T
F
V
F
Q
Q
P
Q
R
A
G
T
P
Q
I
T
I
L
G
R
L
N
S
-
L
-
G
-
H
P
R
I
G
L
T
V
A
K
K
-
N
V
R
R
A
H
E
R
N
R
I
K
R
L
T
R
E
S
F
R
L
R
Q
H
E
L
P
-
A
M
D
F
V
V
V
A
K
K
G
V
----
A
D
L
D
N
R
A
L
S
E
A
L
E
K
L
W
R
R
H
C
R
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
55.33
30%
-6
- C4 -
-
2LJP
-
RNPA_ECOLI
A:
[7-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
R
E
L
R
L
L
T
P
S
Q
F
T
F
V
F
Q
Q
P
Q
R
A
G
T
P
Q
I
T
I
L
G
R
L
N
S
-
L
-
G
-
H
P
R
I
G
L
T
V
A
K
K
N
V
R
-
R
A
H
E
R
N
R
I
K
R
L
T
R
E
S
F
R
L
R
Q
H
E
L
-
P
A
M
D
F
V
V
V
A
K
K
G
V
----
A
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.23
27%
-155
- C4 -
-
4QSH
-
?
A:
[939-989]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
P
L
T
D
R
P
G
A
L
M
E
P
V
N
F
V
E
V
K
A
E
L
K
----
E
K
M
G
Y
E
P
T
E
K
D
V
I
S
Y
I
L
Y
P
K
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.36
27%
-161
- C4 -
-
4QSK
-
?
A:
[938-988]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
P
L
T
D
R
P
G
A
L
M
E
P
V
N
F
V
E
V
K
A
E
L
K
----
E
K
M
G
Y
E
P
T
E
K
D
V
I
S
Y
I
L
Y
P
K
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
41.04
27%
-143
- C4 -
-
4QSL
-
?
H:
[937-983]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
P
L
T
D
R
P
G
A
L
M
E
P
V
N
F
V
E
V
K
A
E
L
K
----
E
K
M
G
Y
E
P
T
E
K
D
V
I
S
Y
I
L
Y
P
K
V
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
40.84
18%
-116
- C4 -
-
3HZQ
-
MSCL_STAAW
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
K
E
F
K
---------------
E
F
A
L
K
G
N
V
---------------
L
D
L
A
I
A
V
V
-
M
G
-
A
A
F
N
K
-
I
I
C
S
L
V
E
N
I
I
M
P
L
I
G
K
I
F
G
S
V
D
F
A
--
K
E
W
S
F
----
W
G
I
K
Y
G
L
F
I
Q
S
V
I
D
F
I
I
I
A
F
A
L
F
I
F
V
K
I
A
N
T
L
M
K
K
E---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
39.69
17%
-124
- C4 -
-
5F6C
1
RNE_ECOLI
A:
[138-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
G
I
S
R
R
-
I
E
-
G
D
-
D
R
T
E
L
K
E
A
L
A
S
L
E
------
L
P
E
G
M
G
L
--
I
V
R
T
A
G
----
V
G
K
S
A
E
A
L
Q
W
D
L
S
F
R
L
K
H
W
E
A
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
38.86
24%
61
- C4 -
-
4CR2
-
RPN1_YEAST
Z:
[49-993]
LELL
V
E
R
L
K
E
DDS
S
L
Y
E
A
S
L
N
A
L
K
E
S
I
KNSTSSMTAVPK
P
L
K
F
L
RPT
Y
P
D
L
C
S
I
Y
D
KWTDPN
L
K
S
S
L
A
D
V
L
S
I
L
A
M
T
Y
SENGKH
D
S
L
R
Y
R
L
L
SDV
S
D
F
E
GWGHEY
I
R
H
L
A
L
E
I
G
E
V
Y
N
D
Q
V
E
K
D
A
E
D
ETSSDGSKSDGSAATSGFEFSK
E
D
T
L
R
L
C
L
D
I
V
P
Y
F
L
K
H
NG
E
E
D
A
V
D
L
L
L
E
I
ES
I
D
K
L
P
Q
F
V
DENTFQ
R
V
C
Q
Y
M
V
A
C
V
PLLPPPEDV
A
F
L
K
T
A
Y
S
I
Y
L
S
Q
NE
L
T
D
A
I
A
L
A
V
R
L
G
E
E
D
M
I
R
S
V
F
D
A
T
S
D
P
V
M
H
K
Q
L
A
Y
I
L
A
A
Q
-
K
-
T
-
S
F
E
--------------------
Y
E
G
V
Q
D
I
I
G
N
G
K
L
S
-------------------
E
H
F
L
Y
L
A
K
E
L
N
L
T
G
P
K
V
P
E
D
I
Y
K
S
H
L
D
N
S
K
S
V
F
S
S
A
GLDS
A
Q
Q
N
L
A
S
S
F
V
N
G
F
L
N
LGYCND
K
L
I
V
D
N
D
NWVYKTK
G
D
G
M
T
S
A
V
A
S
I
G
S
I
Y
QWN
L
D
G
L
Q
Q
L
D
K
Y
L
Y
VDE
P
E
V
K
A
G
A
L
L
G
I
G
I
S
A
SGVHDGEVEP
A
L
L
L
L
Q
D
Y
V
T
NPD
T
K
I
S
S
A
A
I
L
G
L
G
I
A
F
AGSKN
D
E
V
L
G
L
L
LPIAASTDLPIETAAM
A
S
L
A
L
A
H
V
F
VGTCN
G
D
I
T
T
S
I
M
D
N
F
L
E
RTAIELK
T
D
W
V
R
F
L
A
L
A
L
G
I
L
Y
MGQGEQV
D
D
V
L
E
T
I
S
A
I
EH
P
M
T
S
A
I
E
V
L
V
G
S
C
A
Y
TGTGD
V
L
L
I
Q
D
L
L
H
R
L
TL
A
Y
A
V
L
G
I
A
L
I
A
L
GE
D
I
G
K
E
M
S
L
R
H
F
G
H
L
M
H
Y
GN
E
H
I
R
R
M
V
P
L
A
M
G
I
V
S
VSDPQ
M
K
V
F
D
T
L
T
R
F
S
H
DAD
L
E
V
S
M
N
S
I
F
A
M
G
L
C
G
AGTNNAR
L
A
Q
L
L
R
Q
L
A
S
Y
YSRE
Q
D
A
L
F
I
T
R
L
A
Q
G
L
L
H
LGKGTMTMDVFNDAHVLN
K
V
T
L
A
S
I
L
T
T
A
V
GLVSPSFMLKHHQLFYMLNAG
I
R
P
K
F
I
L
A
L
NDEG
E
P
I
K
V
N
V
R
V
G
QPVLLNHG
E
R
A
E
LETDEYISYTSHIEGV
V
I
L
K
K
NPDYREEE
20
PsiBlast_PDB
38.39
22%
-82
- C4 -
-
2VKH
-
?
A:
[388-460]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
K
D
S
-
Y
C
-
S
D
L
V
I
N
Q
I
K
N
R
Y
K
I
L
N
D
N
L
N
P
S
I
N
E
G
T
D
F
N
T
T
M
K
I
F
S
----
D
K
L
A
S
I
S
N
E
D
N
M
M
F
M
I
K
I
T
N
Y
L
K
V
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
37.37
22%
-68
- C4 -
-
2VKD
-
?
A:
[388-457]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
L
K
D
S
-
Y
C
-
S
D
L
V
I
N
Q
I
K
N
R
Y
K
I
L
N
D
N
L
N
P
S
I
N
E
G
T
D
F
N
T
T
M
K
I
F
S
----
D
K
L
A
S
I
S
N
E
D
N
M
M
F
M
I
K
I
T
N
Y
L
K
V
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
35.62
61%
-84
* C5 *
-
3MMY
-
NUP98_HUMAN (first)
A:
[188-209]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
G
L
I
V
Y
Q
L
E
N
Q
-
P
-
S
-
E
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------