@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr2043: (2018-01-25 )
MKNTVKLEQFVALKEKDLQKIKGGEMRLSKFFRDFILQRKK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.--.......20.......-.30........40--------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKN
T
V
K
L
E
Q
F
V
A
--
L
K
E
K
D
L
Q
K
IKGG
E
M
R
L
-
S
K
F
F
R
D
F
I
L
QRKK--------------------------------
1
PsiBlast_PDB
64.31
100%
-223
- C8 -
-
2A1C
-
A:
[1-17]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
R
L
-
S
K
F
F
R
D
F
I
L
Q
R
K
K
--------------------------------
7
HHSearch
62.61
33%
-353
- C8 -
-
2GA1
-
?
A:
[4-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
T
Q
L
L
E
V
I
A
A
--
L
P
E
E
L
V
D
Q
A
L
----------------------------------------------------
17
Fugue
55.23
26%
83
- C5 -
-
4UFC
1
?
A:
[21-807]
DL
K
L
W
Y
SQPAQNWSE
A
L
P
I
G
NSR
L
G
A
M
V
YGGIE
R
E
E
L
Q
L
N
E
ETFWAGSPYNNNNP
N
A
V
H
V
L
P
V
V
R
K
L
I
F
E
GR
N
K
E
A
Q
R
L
I
D
A
NFLTQQH
G
M
S
Y
L
T
L
G
S
L
Y
L
E
FPEHQNGSG
F
Y
R
D
L
N
LENA
T
T
T
T
R
Y
Q
V
DD
V
T
Y
T
R
T
T
F
ASFTDN
V
I
I
M
H
I
K
A
SKANA
L
N
F
T
I
A
Y
N
C
P
L
V
H
K
V
N
V
Q
ND
Q
L
T
V
T
C
Q
G
K
E
Q
EGLKAA
L
R
A
E
C
Q
I
Q
V
K
T
N
G
T
L
R
P
A
GN
T
L
Q
I
N
EGT
E
A
T
L
Y
I
S
A
ATNYVNYQDVSAD
E
S
H
R
T
S
E
Y
L
K
R
A
M
Q
IP
Y
E
K
A
L
K
N
H
I
A
Y
Y
K
K
Q
F
D
R
V
R
L
T
L
P
AGKASQLE
T
P
K
R
I
E
N
FGNGED
M
A
M
A
A
L
L
F
H
Y
G
R
Y
L
L
I
S
S
SQPGGQPANLQGIWNNSTHAPWDSKYTINI
N
T
E
M
N
Y
W
PAEVTNLSETH
S
P
L
F
S
M
L
K
D
L
S
V
T
G
A
E
T
A
R
T
M
YDC
R
G
W
V
A
H
HNTDLWRICGVVDFAAAGMWPS
G
G
A
W
L
A
Q
H
I
W
Q
H
Y
L
F
T
GN
K
E
F
L
K
E
Y
Y
P
I
L
K
G
T
A
Q
F
Y
M
D
F
LVEHPVYK
W
L
V
V
S
PSVSPEHGPITAGC
T
M
D
N
Q
I
A
F
D
A
L
H
N
T
L
L
A
S
Y
I
A
GEA
P
S
F
Q
D
S
L
K
Q
T
L
E
K
L
P
P
M
Q
I
G
KHNQLQEWLEDIDNPKDEHRHISHLYGLYPSNQISPYSN
P
E
L
F
Q
A
A
R
N
T
L
L
Q
R
GDKAT
G
W
S
I
G
W
K
V
N
F
W
A
R
M
LD
G
N
H
A
F
Q
I
I
K
N
M
IQLLPNDHLAKEYPNGRTYPNMLDAHPPFQI
D
G
N
F
G
Y
T
A
G
V
A
E
M
L
LQSHDGAVHLLPALPDAWE
E
G
S
V
K
GLVARGN
F
T
V
D
M
D
W
K
NNVLN
K
A
I
I
R
S
N
I
G
S
T
L
R
I
R
S
Y
V
P
--
L
K
G
K
G
L
K
Q
V
N
G
K
E
C
S
N
-
R
L
F
A
T
T
P
I
K
Q
P
L
V
A
K
GVS
A
Q
S
P
K
L
Q
K
V
Y
E
Y
D
I
ETKAG
K
T
Y
I
V
N
T
I
3
HHSearch
49.30
33%
-37
- C8 -
-
1WWU
-
A:
[52-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
L
F
S
--
L
N
K
E
E
L
K
K
V
C
G
E
E
-------------------------------------------------
21
Fugue
49.12
30%
79
- C8 -
-
1VTP
-
?
?:
[1-26]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
Y
A
S
K
V
D
E
Y
V
G
--
E
V
E
N
D
L
Q
K
S
K
V
A
V
S
------------------------------------------------
18
Fugue
49.12
30%
79
* C8 *
-
1VTP
-
?
A:
[1-26]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
Y
A
S
K
V
D
E
Y
V
G
--
E
V
E
N
D
L
Q
K
S
K
V
A
V
S
------------------------------------------------
12
HHSearch
47.23
18%
-33
- C8 -
-
1Z3E
-
B:
[32-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
E
L
A
N
--
K
T
E
E
D
M
M
K
V
R
N
---------------------------------------------------
13
HHSearch
46.69
18%
-53
- C8 -
-
3GFK
-
RPOA_BACSU
B:
[274-290]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
E
L
A
N
--
K
T
E
E
D
M
M
K
V
R
N
---------------------------------------------------
14
HHSearch
43.53
13%
-207
- C8 -
-
4ZGD
-
?
E:
[169-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
W
S
E
A
Q
L
A
T
L
I
T
Q
D
C
------------------------------------------------
6
HHSearch
43.38
19%
-47
- C8 -
-
2E8M
-
A:
[62-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
L
F
S
--
L
N
K
D
E
L
R
T
V
C
P
E
G
A
R
V
----------------------------------------------
8
HHSearch
43.15
13%
-217
- C8 -
-
4ZGJ
-
?
M:
[169-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
W
S
E
A
Q
L
A
T
L
I
T
Q
D
C
------------------------------------------------
11
HHSearch
42.67
14%
-43
- C8 -
-
3F75
1
?
P:
[69-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
N
H
F
G
D
--
L
S
R
D
E
F
R
R
K
Y
L
G
F
K
K
-----------------------------------------------
19
Fugue
41.97
12%
112
- C7 -
-
2KKE
-
?
A:
[1-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVGRRPGGGL
K
D
T
K
P
V
V
V
R
L
Y
P
--
D
E
I
E
A
L
K
S
R
V
P
A
N
T
S
M
-
S
A
Y
I
R
R
I
I
L
N
H
L
E
DE------------------------------
25
Fugue
41.09
17%
116
- C7 -
-
1B24
-
DMO1_DESMO
A:
[7-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
S
G
I
S
A
Y
L
L
G
L
I
I
G
D
G
G
L
Y
KL
K
Y
K
G
N
R
S
E
Y
R
V
V
--
I
T
Q
K
S
E
N
L
I
K
Q
H
I
A
P
L
M
Q
F
L
I
D
E
L
N
V
K
S
K
I
Q
I
V
K
G
DT
R
Y
E
L
R
V
SS
K
K
L
Y
Y
Y
F
A
N
M
L
E
R
IR--
4
HHSearch
37.29
10%
23
- C6 -
-
2L95
-
?
A:
[57-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
N
H
L
A
D
--
L
T
P
E
E
F
A
Q
R
S
G
K
K
V
------------------------------------------------
16
HHSearch
36.67
23%
140
- C4 -
-
2QYZ
-
?
A:
[50-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
F
M
Q
Y
T
G
--
L
K
D
K
N
E
K
E
I
Y
E
G
D
I
I
K
-
K
S
-------------------------------------------
20
Fugue
33.83
25%
70
- C3 -
-
1EWS
-
RK1_RABIT
A:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
C
S
C
K
K
--------
Y
C
D
P
W
E
V
I
D
G
S
C
----
G
L
F
N
S
K
Y
I
C
C
R
E
K
--------------------------------
5
HHSearch
32.72
27%
132
- C8 -
-
2MYQ
-
A:
[12-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
F
L
G
S
N
V
M
E
E
Q
D
L
R
D
I
-----------------------------------------------------
24
Fugue
31.62
19%
0
- C- -
-
1JB0
-
PSAM_THEEB
M:
[1-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
L
T
-
D
T
Q
V
Y
V
A
--
L
V
I
A
L
L
P
A
V
L
A
F
R
L
S
T
-
E
L
Y
K
-----------------------------------------
23
Fugue
30.98
13%
4
* C7 *
-
1XYP
-
XYN2_HYPJR
A:
[2-190]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TI
Q
P
G
T
G
Y
N
NG
Y
F
Y
S
Y
W
N
DGHGG
V
T
Y
T
N
G
P
GG
Q
F
S
V
N
W
S
NS
G
N
F
V
G
G
K
G
W
QPGTK
N
K
V
I
N
F
S
G
S
Y
N
P
N
G
N
S
Y
L
SV
Y
G
W
S
R
NP
L
I
E
Y
Y
IVENFGTYNPSTGATKL
G
E
V
T
S
DG
S
V
Y
D
I
Y
R
T
Q
R
V
NQPSI
I
G
-
T
A
T
F
Y
Q
Y
W
S
--
V
R
R
N
H
R
--
S
S
-
G
S
V
N
T
-
A
N
H
F
N
A
W
A
Q
Q
G
L
T
L
G
TMDYQIV
A
V
E
G
Y
F
S
S
G
S
A
S
I
T
V
S-------