@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKB2: (2017-10-25 )
MKKIILASAMSGVVLLLGACATTPKNTLAIQKENNQFEVTGIGKTNLIAKNNAVTAAQKTCSKSTTPVIVDEKTSYHGVLKDVVSEKTGQMVEAAAGVIGTLTGKNASLAKDDDYQTTLTFYCKIN
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....--...30----.--....-....40.-.---......50-........-.60........70----..---.......80--....-..---...90....--....100.......110.......120....---------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
K
I
I
L
A
S
A
M
S
G
V
V
L
L
L
G
ACATTPK
N
--
T
L
A
I
-----Q--KENN-
Q
F
E
V
T
GI-G---K
T
N
L
I
AK--NNA
V
T
A
A
Q
-
K
TCSKSTT
P
V
I
V-----DE---KT
S
Y
H
G
V
L
---
K
D
V
V
-
S
E
---KT
G
Q
M
V
E
A
A--AG
V
I
G
TLTGKNASLAKDDDY
Q
T
T
L
T
F
Y
C
KIN---------------------------------------------------------------------------
113
Fugue
64.82
26%
12
- C4 -
-
5K1A
-
WDR48_HUMAN
B:
[14-675]
K
V
Q
V
S
Y
V
I
R
D
EVEKYNRNGVN
A
L
Q
L
D
PALN
R
L
F
T
A
G
RDS
I
I
R
I
W
S
VNQHKQDPYIASMEHHTDWVN
D
I
V
L
C
CNGK
T
L
I
S
A
S
SDT
T
V
K
V
W
NAHKGFCMSTLRTHKDYVK
A
L
A
Y
AKDKE
L
V
A
S
A
GLDR
Q
I
F
L
W
D
V
N
T
L
T
A
LTASNN
T
V
T
T
S
S
L
S
GNKDSIY
S
L
A
M
N
QLGT
I
I
V
S
G
S
TEK
V
L
R
V
W
DPRTCAKL
M
K
L
K
GHTDNVK
A
L
L
L
N
RDGT
Q
C
L
S
G
S
SDG
T
I
R
L
W
S
LGQQRCIATYRVHDEGVW
A
L
Q
V
N
DAFT
H
V
Y
S
G
G
RDR
K
I
Y
C
T
D
LRNPDIRVLICEEKAPVL
K
M
E
L
DRSADPPP
A
I
W
V
A
T
TKS
T
V
N
K
W
T
L
KGTPLCTQPD
Q
V
I
K
G
G
A
S
II
Q
C
H
I
L
NDKR
H
I
L
T
K
D
TNN
N
V
A
Y
W
D
VLKACKVEDLGKVD
F
E
D
E
I
K
K
R
FKM
V
Y
V
P
NW
F
S
V
D
LKTG
M
L
T
I
T
L
D
ESDCFA
A
W
V
S
AKDAGFSS
P
P
K
L
N
L
G
G
L
L
--
L
Q
A
L
L
E
Y
W
P
R
T
H
V
N
--
P
M
-
V
-----
Q
--
K
G
N
G
-
Y
F
Q
V
------------------------------
P
P
H
T
P
V
I
F
-----
G
E
AGG
R
T
L
F
R
L
L
C
---
R
D
S
G
-
G
E
---
T
E
S
M
L
L
N
E
T
VP
Q
W
V
I
D
I
T
V
D
K
N
M
P
------
K
F
N
K
I
P
F
Y
L
Q
P
H
AK
K
D
R
L
S
A
SDMLQ
V
R
K
V
M
E
H
V
Y
E
KIINLED
I
A
V
L
A
E
E
K
I
E
L
L
C
QD
Q
V
L
D
PNMD
L
R
T
V
K
H
FIWKSGG
D
L
T
L
H
Y
R
Q
K
4
PsiBlast_PDB
52.68
26%
-
- C9 -
-
4DNG
-
ALDY_BACSU
A:
[61-180]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
S
T
T
E
D
R
--
K
A
V
L
-----
Q
--
K
A
R
G
-
Y
L
H
E
N
R
D
-
D
---
I
I
M
M
I
A
R
--
E
T
G
G
T
I
I
K
-
S
T
I
E
L
E
Q
T
I
A
I
L
-----
D
E
---
A
M
T
Y
T
G
E
L
G
G
V
K
E
V
P
-
S
D
IEG
K
T
N
K
I
Y
R
L
P
--
L
G
V
I
S
S
I
S
P
F
N
-----------------------------------------------------------------------------------------------
115
Fugue
50.99
15%
-5
- C8 -
-
1BNC
-
ACCC_ECOLI
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
D
K
I
V
I
A
N
R
G
E
I
A
L
R
I
L
R
A
C
K
E
L
G
I
K
--
T
V
A
V
-----
H
S
S
A
D
R
D
-
L
K
H
V
L
L
A
-
D
---
E
T
V
C
I
G
P
--
A
P
S
V
K
S
Y
L
-
N
--
I
P
A
I
I
S
A
A
E
-----
I
T
---
G
A
V
A
I
H
P
G
---
Y
G
F
L
-
S
E
---
N
-
A
N
F
A
E
Q
V
--
E
R
S
G
F
I
F
I
G
P
K
A
E
T
I
R
L
M
G
---------------------------------------------------------------------------------------
106
Fugue
48.61
17%
15
- C3 -
-
3WMV
3
LEC_MYTGA
A:
[4-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
T
F
L
I
K
H
K
A
S
G
K
F
L
H
P
K
G
G
S
S
N
P
A
N
D
T
N
L
V
L
H
SDIH
E
--
R
M
Y
F
-
Q
F
D
V
V
D
E
-
R
---
W
G
Y
I
K
H
A
AS
G
K
I
V
H
P
L
G
G
K
A
D
P
P
N
E
T
K
L
V
L
H
QDRH
D
R
---
A
L
F
A
M
D
F
F
---
N
D
N
I
-
I
H
---
K
A
G
K
Y
V
H
P
K
--
G
G
S
T
N
P
P
N
E
T
L
T
V
M
H
G
D
K
H
G
A
M
E
F
I
F
V
S
P
K
N
KD
K
R
V
L
VYV------------------------------------------------------------------
107
Fugue
48.13
17%
48
- C8 -
-
1U6T
1
SH3L1_HUMAN
A:
[1-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
R
V
Y
I
A
S
S
S
G
S
-----
T
A
I
K
K
K
Q
Q
D
--
V
L
G
F
-----
L
--
E
A
N
K
I
G
F
E
E
K
D
I
-
A
AN
E
E
N
R
K
W
M
R
--
E
N
V
P
E
N
S
R
-
P
A
T
G
Y
P
L
P
P
Q
I
F
-----
N
E
----
S
Q
Y
R
G
D
Y
---
D
A
F
F
-
E
A
---
R
E
N
N
A
V
Y
A
F
--
L
G
L
T
A
P
---
P
G
S
K
E
A
E
V
Q
A
K
Q
Q
A
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------
110
Fugue
47.60
19%
-71
- C8 -
-
2GRG
-
YN034_YEAST
A:
[1-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
S
S
I
P
----------
I
T
E
V
L
P
R
A
V
G
--
S
L
T
F
-----
D
--
E
N
Y
N
-
L
L
D
T
S
G
V
-
A
---
K
V
--
I
E
K
--
S
P
I
A
E
I
I
R
-
K
S
N
A
E
L
G
R
----------------
L
G
Y
S
V
Y
---
E
D
---
A
Q
---
Y
I
G
H
A
F
K
K
A
--
G
H
F
I
V
Y
F
T
P
K
N
------
K
N
R
E
G
V
V
P
P
V
G
I
T
N
---------------------------------------------------------------------------
2
PsiBlast_PDB
43.30
33%
-111
- C9 -
-
2ALJ
-
DIVIB_GEOKA
A:
[148-183]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
S
D
A
P
V
L
V
-----
G
W
---
K
D
G
---------
D
A
I
-
A
E
---
M
T
G
Q
L
A
E
L
P
--
A
A
V
L
G
A
M
S
--------------------------------------------------------------------------------------------------
111
Fugue
42.28
12%
-98
* C8 *
-
2K8S
-
?
A:
[1-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
S
K
A
I
F
Y
H
A
G
C
P
V
C
V
S
A
--
E
Q
A
V
-----
A
--
N
A
I
D
-
P
-
S
K
Y
T
V
-
E
---
I
V
H
L
G
T
D
--
K
A
R
I
A
E
A
E
-
K
A
-
G
V
K
S
V
P
A
L
V
-----
I
D
---
G
A
A
F
H
I
N
F
---
G
A
G
I
-
D
D
---
L
K
G
S
-----------------------------------------------------------------------------------------------------------------
30
HHSearch
41.58
18%
50
- C9 -
-
2YIZ
5
?
B:
[9-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
V
G
T
S
P
---
D
G
V
D
A
A
I
--
Q
G
G
L
A
R
A
A
-
Q
T
M
R
A
L
-
D
W
F
E
V
-----
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
41.10
21%
34
- C9 -
-
3ONR
1
DODEC_MYCTU
G:
[9-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
G
T
S
P
---
T
S
W
E
Q
A
A
--
A
E
A
V
Q
R
A
R
-
D
S
V
D
D
I
-
R
V
A
R
V
-----
I
E
---------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
41.04
29%
51
- C9 -
-
2VXA
1
DODEC_HALHL
E:
[10-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
T
G
S
-
S
P--
N
G
I
E
E
A
V
--
N
N
A
I
A
R
A
G
-
E
T
L
R
H
L
-
R
W
F
E
V
-----
V
D
---------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
40.18
21%
52
- C9 -
-
3ONR
1
DODEC_MYCTU
C:
[9-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
G
T
S
P
---
T
S
W
E
Q
A
A
--
A
E
A
V
Q
R
A
R
-
D
S
V
D
D
I
-
R
V
A
R
V
-----
I
E
---------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
39.49
26%
83
- C9 -
-
2UX9
2
DODEC_THET8
D:
[9-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
V
G
T
S
E
---
E
G
L
E
A
A
I
--
Q
A
A
L
A
R
A
R
-
K
T
L
R
H
L
-
D
W
F
E
V
-----
K
E
---------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.02
33%
-77
- C9 -
-
1YR1
-
DIVIB_GEOKA
A:
[148-183]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
S
D
A
P
V
L
V
-----
G
W
---
K
D
G
---------
D
A
I
-
A
E
---
M
T
G
Q
L
A
E
L
P
--
A
A
V
L
G
A
M
S
--------------------------------------------------------------------------------------------------
42
HHSearch
38.86
26%
80
- C9 -
-
2V18
3
DODEC_THET8
F:
[8-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
V
G
T
S
E
---
E
G
L
E
A
A
I
--
Q
A
A
L
A
R
A
R
-
K
T
L
R
H
L
-
D
W
F
E
V
-----
K
E
---------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
38.46
18%
56
- C9 -
-
3OQT
-
?
D:
[10-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
V
G
T
S
P
---
D
G
V
D
A
A
I
--
Q
G
G
L
A
R
A
A
-
Q
T
M
R
A
L
-
D
W
F
E
V
-----
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
38.22
21%
92
- C9 -
-
2CC6
1
DODEC_HALS3
A:
[7-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
G
T
S
E
---
E
S
F
T
A
A
A
--
D
D
A
I
D
R
A
E
-
D
T
L
D
N
V
-
V
W
A
E
V
-----
V
D
---------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
37.67
21%
85
- C9 -
-
2VKG
1
DODEC_HALS3
A:
[6-40]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
G
T
S
E
---
E
S
F
T
A
A
A
--
D
D
A
I
D
R
A
E
-
D
T
L
D
N
V
-
V
W
A
E
V
-----
V
D
---------------------------------------------------------------------------------------------------------------------------------------------
108
Fugue
35.98
18%
-8
- C6 -
-
5T77
15
MURJ_THEAB
A:
[4-470]
--------------------------------------------------------------------------------------------------------------------------L
F
S
S
I
L
F
S
I
A
T
F
F
S
R
I
L
G
L
F
R
D
V
L
F
A
K
Y
FGVS
Y
E
L
D
A
Y
F
I
A
I
M
F
P
F
F
L
R
K
V
F
G
E
G
A
M
S
S
A
F
V
P
L
Y
S
E
KSG
E
E
K
D
K
F
L
S
S
V
I
N
G
F
S
L
I
I
L
A
L
V
I
L
S
Y
F
FP
E
L
I
I
N
L
F
GAGSS
H
E
T
K
I
L
A
K
K
L
L
L
I
T
S
P
S
I
Y
F
I
F
L
W
A
I
S
Y
S
I
L
N
T
N
NKFFWPAL
T
P
S
I
S
N
I
T
I
I
I
G
T
F
L
STKYG
I
I
S
P
T
I
G
F
L
I
G
S
I
L
M
F
F
S
I
I
K
S
I
I
K
H
K
Y
Y
FTIKH
F
P
H
F
L
K
L
F
F
P
T
F
M
T
M
V
V
S
Q
I
N
T
V
V
D
M
N
V
V
S
FYDKG
S
I
S
Y
L
Q
Y
A
S
R
F
Y
L
L
P
Y
G
L
FAVSVS
T
V
V
L
S
K
I
S
N
D
RKN
F
N
Y
H
L
N
D
A
L
K
T
T
L
F
F
T
I
P
S
M
V
G
L
I
F
L
S
T
P
I
I
R
F
F
Y
E
H
G
A
F
--
T
S
K
D
--
T
L
I
T
-----
S
--
K
I
L
I
-
A
Y
T
L
G
--------
L
P
F
Y
G
I
--
Y
S
T
I
S
R
S
Y
-
H
A
I
K
N
T
K
T
P
F
I
A
-----
A
T
---
I
V
S
L
S
N
I
I
---
L
D
I
I
F
G
L
---
K
Y
G
P
I
G
V
A
L
--
A
T
S
I
A
G
I
I
G
V
L
Y
L
L
F
S
V
K
T
F
P
I
K
D
F
L
K
I
S
L
N
S
L
I
M
L
F
V
I
Y
L
T
DFTDNEF
W
F
L
I
Q
I
L
I
G
I
L
V
Y
L
I
F
S
S
I
F
Y
R
D
L
I
R
R
F
L----------------------------
41
HHSearch
35.83
20%
98
- C9 -
-
4B2H
1
DODEC_HALS3
A:
[7-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
G
T
S
E
---
E
S
F
T
A
A
A
--
D
D
A
I
D
R
A
E
-
D
T
L
D
N
V
-
V
W
A
E
V
-----
V
D
---
Q
-----------------------------------------------------------------------------------------------------------------------------------------