@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKC2: (2017-10-26 )
MIGQQRNILATLGIDVWIPRTQVCQKNNAHTLWRDQVVEPHESITVPTIDVPAFEQKNTQPQVFEIPKVVEEPPIVVAEVSQPEILVEKPKVIEQETITPFELQAYCLEKCVIFVDVTALETEEKQLWANIQKAKVGRYSELRWPFPLAAYQDQRGVGSYIQGFLDAVAAEKKILCLGKCAYIQHANIIHLASLKEMLDKPLLKKRLWQLMQDNNE
Atome Classification :
(20 SA)
-----------------------------------.......---..10........--------20-.....-...-------------30........40.....-.-..50........-60........70........80.-....-..---.90.....-..--.100........--110...---....120.....----..130-....-...140-----.------.......150-----.-..---------------...----..160.-......---.170----------------........180-.---------------------.----------------.....190------.-..-....-------.200.-----.-----......210.-...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------MIGQQR
N
---
I
L
A
T
LG
I
D
V
WIP--------
R
T
-
Q
VCQK-NNA-------------H
T
L
W
R
D
QVVEPHESITV-P-TIDVPAFEQKNT-QPQ
V
F
EI
P
K
V
VEEP
P
I
V
V
A
EVSQ-P
E
I
L
-VE---KPKVIEQE-TI--
T
P
-
F
E
L
Q
A
Y
C
L
E--K
C
V
I
F
V
---
D
V
TALE
T
E
E
K
Q
L
----
W
A
N
I
Q
-
K
AKV-GRYSE------L------RWPFPLAA-Y-----Q-DQ---------------RG
V
----
G
S
Y
-
I
Q
-
G
F
L
D
A
V
---AAE-----------------
K
K
I
L
C
L
G
K
C
A
Y
-
I
---------------------Q----------------HA
N
I
I
H
L
-------
A
-
S
L
-
K
E
M
L
-------
D
K
P
-
L
-----
L
-----
K
K
R
L
W
Q
L
M
QD-NNE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
66.16
16%
16
- C6 -
-
5LPH
-
CE104_HUMAN
A:
[26-285]
------------------------------LGEPE
P
L
T
E
K
A
L
---
R
E
A
S
S
A
I
D
V
L
-
G
--------
E
T
-
L
V
A
E
A
-
Y
C
K
-------------
T
W
S
Y
R
E
D
A
L
L
A
L
S
K
K
-
L
M
E
M
P
V
G
T
P
K
E
D
L
K
N
T
L
R
A
S
V
F
L
V
R
R
A
I
K
D
I
V
T
S
V
F
Q
A
S
L
-
K
L
L
K
M
I
----
I
T
Q
Y
I
P
K
H
-
K
L
--
S
K
-
L
E
T
-
A
H
C
V
E
--
R
T
I
P
V
L
---
L
T
R
T
G
D
S
S
A
R
L
R
----
V
T
A
A
N
-
F
I
Q
E
M
A
L
F
K
E
------
V
------
K
S
L
Q
I
I
P
S
-
Y
L
V
QPL
K
-
A
N
---------------
S
S
V
----
H
L
A
M
S
Q
M
G
L
L
A
R
L
---
L
K
D
L
GTGSSGFT
I
D
N
V
M
K
F
S
V
S
A
L
E
H
R
V
Y
E
V
-
R
---------------------
E
----------------
T
A
V
R
I
I
L
D
M
Y
R
Q
HQ
A
-
S
I
-
L
E
Y
L
PPDDSNT
R
R
N
-
I
-----
L
-----
Y
K
T
I
F
E
G
F
A
K
-
I
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
59.24
20%
-13
- C4 -
-
1VR8
3
?
A:
[5-141]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
H
H
H
H
-
H
H
--
P
P
----
E
A
Y
S
L
D
--
T
A
I
F
V
L
ETR
D
Y
R
L
S
D
V
K
E
I
D
S
----
Y
G
D
V
E
M
K
G
K
V
-
A
V
F
E
T
------
E
------
Y
G
P
V
F
L
Y
V
-
Y
-----
K
-
G
E
E
A
K
K
I
W
K
K
L
N
G
RVS
I
R
S
V
----
L
D
L
-
P
N
M
G
K
F
S
T
V
---
S
N
G
-----------------
K
K
I
V
A
W
W
R
--------------------------------------------
K
N
W
L
F
I
-------
V
-
E
G
-
K
N
G
V
-------
E
E
--------
F
-----
V
K
H
V
Y
R
V
Y
E
E
M
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
55.95
13%
-121
- C7 -
-
1EM8
-
HOLD_ECOLI
D:
[40-128]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
M
V
---
A
N
D
L
P
A
L
-
T
D
P
L
----
V
S
D
V
L
-
R
A
L
T
-
V
S
P
D
Q
------
V
------
L
Q
----
L
T
-
P
-----
E
-
K
------------------
I
-----------
A
M
L
P
Q
----
G
S
H
-----------------
C
N
S
W
R
L
G
T
D
E
P
L
S
---------------------
L
----------------
E
G
A
Q
V
A
S
-------
P
-
A
L
-
T
D
L
R
-------
A
N
P
-
T
-----
A
-----
R
A
A
L
W
Q
Q
I
C
T
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
52.08
13%
-126
* C7 *
-
3SXU
-
HOLD_ECOLI
B:
[41-129]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
M
V
---
A
N
D
L
P
A
-
L
T
D
P
L
----
V
S
D
V
L
-
R
A
L
T
-
V
S
P
D
Q
------
V
------
L
Q
----
L
T
-
P
-----
E
-
K
------------------
I
-----
A
------
M
L
P
Q
G
----
S
H
-----------------
C
N
S
W
R
L
G
T
D
E
P
L
S
---------------------
L
----------------
E
G
A
Q
V
A
S
-------
P
-
A
L
-
T
D
L
R
-------
A
N
P
-
T
-----
A
-----
R
A
A
L
W
Q
Q
I
C
T
-
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
52.05
16%
62
- C6 -
-
4C3X
7
?
A:
[23-530]
DWTSECD
V
L
V
V
G
SG
G
G
A
L
T
G
A
Y
T
A
A
A
Q
G
L
T
T
I
V
L
E
K
T
D
R
F
G
G
---
T
S
A
Y
S
G
A
S
I
W
L
P
--------
G
T
-
Q
V
Q
E
R
-
A
G
L
-----------------
P
D
S
T
E
N
A
R
T
Y
L
R
A
-
L
-
L
G
D
A
E
S
E
R
Q
D
A
Y
-
V
E
T
A
P
A
V
V
A
L
L
E
Q
N
P
N
I
E
F
E
F
R
A
F
P
D
Y
Y
-
K
A
---
E
G
R
M
D
T
G
R
-
S
I
--
N
P
-
L
D
L
-----------------
D
P
A
D
I
G
D
L
A
G
K
V
----
R
P
E
L
D
-
Q
D
R
T
-
G
Q
D
H
A
---------------
P
G
P
M
----------------------------
I
G
G
----
R
A
L
-
I
G
-
R
L
L
A
A
V
---
Q
S
T
-----------------
G
K
--------------------------------------------------
A
E
L
R
T
E
-------
S
-
V
L
-
T
S
L
I
-------
V
E
D
-------------
G
R
V
V
G
A
E
V
E
S
-
G
G
E
T
Q
R
I
K
A
NR
G
V
L
M
AAGGIEGN
A
E
M
R
E
Q
A
GTPGKAIWSMGPFGANTG
D
A
I
S
A
G
I
A
V
G
G
A
T
A
LLDQAW
F
C
P
G
VEQPDGSAAFMVGVR
G
G
L
V
V
D
SAGERYLNESLP
Y
D
Q
F
G
R
A
M
D
A
H
DDNGSAVP
S
F
M
I
F
D
SREGGGLPAICIPNTA
P
A
K
H
L
E
A
GT
W
V
G
A
DT
L
E
E
L
A
A
K
T
GLP
A
D
A
L
R
S
T
V
E
K
F
N
D
A
A
K
L
GVDEEFHRGEDPYDAFFCPPNGGANAALTAIENGP
F
Y
A
A
R
I
V
LSDLGTKG
G
L
V
T
D
VNG
R
V
L
R
ADGSAIDG
L
Y
A
A
G
NTSASLSGRFYPGPG
V
P
L
G
T
A
M
V
F
S
Y
R
A
A
Q
D
M
A
K
11
HHSearch
47.44
11%
-21
- C7 -
-
1VK2
2
UDGA_THEMA
A:
[75-196]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
M
L
----
L
T
E
L
L
-
R
E
S
G
-
I
R
R
E
D
------
V
Y
I
C
N
VV
K
C
R
P
-
P
N
N
-
R
-----
T
-
P
T
---------------
P
E
E
Q
A
A
C
G
H
F
-
L
L
-
A
Q
I
E
I
----
I
N
P
-----------------
D
V
I
V
A
L
G
A
T
A
L
-
S
F
F
V
DGKKVSITKVRG
N
P
I
D
W
L
G
----------------
G
K
K
V
I
P
T
-------
F
-
H
P
-
S
Y
L
L
-------
R
N
R
-
S
N
E
---
L
-----
R
R
I
V
L
E
D
I
E
K
-
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
46.25
13%
-27
- C2 -
-
2OCC
-
COX3_BOVIN
C:
[1-261]
------------------MTHQTHAYHMVNPSP
W
P
L
T
G
A
L
S
A
---
L
L
M
T
S
G
L
T
M
W
F
H
FNSM
T
L
L
M
I
G
-
L
T
T
N
M
-
L
T
M
-------------
Y
Q
W
W
R
D
V
I
R
E
S
T
F
Q
G
H
H
-
T
-
P
A
V
Q
K
G
L
R
Y
G
M
I
-
L
F
I
I
S
E
V
L
F
F
T
G
F
F
W
A
F
Y
H
S
S
L
A
-
P
T
P
E
-
L
G
GCW
P
P
T
G
I
H
P
L
-
N
P
LE
V
P
-
L
L
N
T
S
V
L
L
A
S
G
V
S
I
T
W
A
---
H
H
S
L
M
E
G
D
R
K
H
M
----
L
Q
A
L
F
-
I
T
I
T
L
G
V
Y
F
T
------
L
------
L
Q
A
S
E
Y
Y
E
-
A
-----
P
-
F
T
---------------
I
S
D
----
G
V
Y
-
G
S
-
T
F
F
V
A
T
---
G
F
H
-----------------
G
L
H
V
I
I
G
S
--------------------------
T
----------------
F
L
I
V
C
F
F
-------
R
-
Q
L
-
K
F
H
F
-------
T
S
N
-
H
H
F
G
F
E
A
-----
G
A
W
Y
W
H
F
V
D
V
-
V
W
L
F
L
Y
V
S
IYWWGS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
44.51
12%
-26
- C6 -
-
4YH8
-
U2AF1_SCHPO
A:
[15-194]
-------------------------------------
K
V
N
C
S
---
F
Y
Y
K
I
G
------------------
A
C
R
H
-
G
--------------------
E
R
C
S
R
K
H
V
----------------
K
P
N
-
F
S
Q
T
I
L
C
P
N
M
Y
K
N
P
I
H
------
E
-
P
N
G
K
-
K
F
---
T
Q
R
E
L
A
E
Q
-
F
D
--
A
F
-
Y
E
D
M
F
C
E
F
S
--
K
Y
G
E
V
E
---
Q
L
V
V
C
D
N
V
G
D
H
L
VG
N
V
Y
V
R
F
K
-
Y
E
E
S
-
A
Q
N
A
I
------
D
------
D
L
N
S
R
W
Y
S
-
Q
-----
R
-
P
V
---------------
Y
A
E
----
L
S
P
-
V
T
-
D
F
R
E
A
C
---
C
R
Q
-----------------
H
E
T
---
S
E
C
Q
R
-
G
---------------------
G
----------------
L
C
N
F
M
H
A
-------
K
-
K
P
S
P
Q
L
L
-------
R
D
L
-
V
-----
L
-----
A
Q
R
K
Y
L
A
L
N
A
-
A
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
44.01
24%
-112
* C5 *
-
2GH8
-
CAPSD_SMSV4
A:
[271-345]
--------------------------------------------------------------------------------------------------
V
E
P
I
E
S
V
S
M
-
L
-
Q
Y
P
H
V
L
F
D
A
R
Q
T
-
E
P
V
I
F
T
I
P
D
I
R
K
T
L
F
H
S
M
D
E
T
D
T
-
T
K
L
V
-
I
-------
M
V
Y
N
E
-
L
I
--
N
P
-
Y
E
N
G
V
E
N
K
T
--
T
C
S
I
T
V
---
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
43.70
13%
-4
- C7 -
-
1L9G
1
UDGA_THEMA
A:
[62-184]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
G
M
L
----
L
T
E
L
L
-
R
E
S
G
-
I
R
R
E
D
------
V
Y
I
C
N
VV
K
C
R
P
-
P
N
N
-
R
-----
T
-
P
T
---------------
P
E
E
----
Q
A
A
-
C
G
-
H
F
L
L
A
Q
I
E
I
I
N
P
-----------------
D
V
I
V
A
L
G
A
T
A
L
-
S
F
F
V
DG
K
K
V
S
ITKVRG
N
P
I
D
W
L
G
----------------
G
K
K
V
I
P
T
-------
F
-
H
P
-
S
Y
L
L
-------
R
N
R
-
S
N
E
---
L
-----
R
R
I
V
L
E
D
I
E
K
-
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
43.56
13%
27
- C6 -
-
2QGN
-
MIAA_BACHD
A:
[2-314]
------------------------K
E
K
L
V
A
I
V
G
P
T
A
V
G
K
T
K
T
S
V
M
L
A
K
R
L
N
G
E
V
I
S
G
--------
D
S
M
Q
V
Y
R
G
M
D
I
G
TAKITAEEMDG
V
P
H
H
L
--
I
D
I
K
D
P
S
E
S
F
S
V
-
A
-
D
F
Q
D
L
A
T
P
L
I
T
E
-
I
H
E
R
G
R
L
P
F
L
V
G
G
T
G
L
Y
V
N
A
V
I
H
-
Q
F
N
L
-
G
E
---
T
P
S
P
Y
N
L
V
M
I
G
--
L
T
M
E
R
D
V
L
Y
D
R
I
--
N
R
R
V
D
Q
M
--
V
E
E
G
L
I
D
E
A
K
K
L
----
Y
D
R
G
I
-
R
-----
D
C
Q
S
------
V
------
Q
-
A
I
G
Y
K
E
M
Y
-----
D
-
Y
L
---------------
D
G
N
----
V
T
L
-
E
E
-
A
I
D
T
L
K
---
R
N
S
-----------------
R
R
Y
A
K
R
Q
L
T
W
F
-
R
---------------------
N
----------------
K
A
N
V
T
W
F
-------
D
M
T
D
-
V
D
F
D
-------
K
K
I
M
E
-----
I
-----
H
N
F
I
A
G
K
L
E
E
-
K
S
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
43.22
17%
16
- C7 -
-
1UI0
3
UDGA_THET8
A:
[56-182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
G
Q
L
----
L
N
R
I
L
-
E
A
A
G
-
I
P
R
E
E
V
Y
I
T
N
I
V
------
K
C
R
P
-
P
Q
N
-
R
-----
A
P
L
P
---------------
D
E
A
----
K
I
C
-
T
D
-
K
W
L
L
K
Q
I
E
L
I
A
P
-----------------
Q
I
I
V
P
L
G
A
V
A
A
-
E
F
F
L
G-----------------
E
KVSITKVRG
K
W
Y
E
W
H-
G
I
K
V
F
P
M
-------
F
-
H
P
-
A
Y
L
L
-------
R
N
P
-
S
-----
R
APGS
P
K
H
L
T
W
L
D
I
Q
E
-
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.02
45%
-176
- C1 -
-
4GQZ
-
?
C:
[120-130]
---------------------------------------------------
I
G
V
W
L
P
--------
R
N
-
M
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.49
18%
-82
- C7 -
-
4ZBX
1
UDGA_SULTO
A:
[158-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
F
P
T
-------
Y
-
H
P
-
A
A
A
L
-------
Y
N
P
-
N
-----
L
-----
R
K
I
L
E
E
D
F
K
K
-
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
39.31
18%
-81
- C7 -
-
4ZBY
2
UDGA_SULTO
A:
[158-185]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
F
P
T
-------
Y
-
H
P
-
A
A
A
L
-------
Y
N
P
-
N
-----
L
-----
R
K
I
L
E
E
D
F
K
K
-
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
39.19
19%
26
* C6 *
-
1BTT
2
A:
[1-21]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
-
S
E
L
L
-------
I
S
T
-
A
-----
V
-----
Q
G
I
L
F
A
L
L
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
37.48
40%
-158
- C8 -
-
2VF8
-
?
A:
[193-249]
---------------------------------------
Q
R
D
---
I
L
V
T
L
G
I
D
V
D
V
P
--------
W
R
-
E
L
P
E
E
-
T
R
H
-------------
W
I
L
F
T
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.20
40%
-187
* C8 *
-
2VF7
-
?
A:
[193-241]
---------------------------------------
Q
R
D
---
I
L
V
T
L
G
I
D
V
D
V
P
--------
W
R
-
E
L
P
E
E
-
T
R
H
-------------
W
I
L
F
T
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
29.47
21%
17
- C3 -
-
2MNJ
-
A:
[1-23]
---------------------------------------------------------------------------------------------------
G
P
H
M
S
V
Q
I
-
P
-
V
V
E
V
D
E
L
P
E
G
Y
D
-
R
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.76
12%
-63
- C7 -
-
3IKB
-
?
B:
[123-188]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
T
I
L
I
G
N
Y
A
Q
-
K
YYLH-----------------
Q
KSSVKLTDTVAHYKKY
L
P
D
Y
F
P
L
-------
V
-
H
P
-
S
P
R
N
QIWMS--
R
H
P
-
W
-----
F
-----
E
A
Q
V
V
P
D
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------