@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKC5: (2017-10-26 )
MTANIMTTLKNQITDALKTSMRAKDMATVTVLRSLQAAIKQIEVDERIELDDAQVLAVIEKQIKQRKESIKAFEGAGRDDLASKEQAEAEVLSQFLPEAMTEEELDSLIEQTIAAQEATSMKDMGKVMNSLRPIIAGRADPAQVSAKIKAKLA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30....---------....40.---------...-..-..50........60-.....------...70-........80........90........--------100.......110.......120---.........130.......140.......150.---------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
A
N
I
M
T
T
L
K
N
Q
I
T
D
A
L
K
T
S
MRA
K
D
M
A
T
V
T
V
L
R
S
L
---------
Q
A
A
I
K
Q
I---------EVD-ER-IELD
D
A
Q
V
L
A
V
I
E
K
-
Q
I
K
Q
R
------
K
E
S
I
K
-
A
FEGAGRDDLA
S
K
E
Q
A
E
A
E
V
L
S
Q
F
L
P
E
A--------M
T
E
E
E
L
D
S
L
I
E
Q
T
I
A
A
Q
E
A
T
S
-----
M
K
D
M
G
K
V
M
N
S
L
R
P
I
IAGRA
D
P
A
Q
V
S
A
K
I
K
A
KLA---------
31
HHSearch
79.69
32%
26
- C2 -
-
1NG6
-
YQEY_BACSU
A:
[1-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
V
V
R
M
V
---------
K
A
S
L
Q
N
E
---------
A
I
K
-
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
-
E
L
K
Q
R
------
K
D
S
L
Q
-
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
--------
L
S
E
E
E
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
21
Fugue
78.75
31%
26
- C2 -
-
1NG6
-
YQEY_BACSU
A:
[1-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
V
V
R
M
V
---------
K
A
S
L
Q
N
E
---------
A
I
K
-
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
-
E
L
K
Q
R
------
K
D
S
L
Q
-
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
--------
L
S
E
E
E
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
1
PsiBlast_PDB
78.72
31%
26
- C2 -
-
1NG6
-
YQEY_BACSU
A:
[2-148]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
E
R
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
D
K
L
T
V
V
R
M
V
---------
K
A
S
L
Q
N
E
---------
A
I
K
L
K
K
-
D
S
L
T
E
D
E
E
L
T
V
L
S
R
-
E
L
K
Q
R
------
K
D
S
L
Q
-
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
--------
L
S
E
E
E
L
R
T
I
V
N
E
T
I
A
E
V
G
A
S
S
-----
K
A
D
M
G
K
V
M
G
A
I
M
P
K
V
K
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
---------
13
PsiBlast_PDB
59.90
25%
41
- C2 -
-
3RG2
1
ENTB_ECOLI (first)
A:
[486-605]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
V
Q
V
R
R
F
L
R
--------
E
Q
G
I
A
E
F
---------
K
L
P
-
D
R
-
V
E
C
V
D
S
L
P
L
T
A
V
G
K
V
D
K
K
Q
L
------
R
Q
W
L
A
-
S
R
A
S
A
G
R
A
S
I
P
A
S
K
A
A
L
R
E
V
I
L
P
L
L
D
E
S
D
E
P
F
DDDN
L
I
D
Y
G
L
D
S
V
R
M
M
A
L
A
A
R
W
R
K
V
-----
H
G
D
I
D
F
V
M
L
A
K
N
P
T
I
---------------------------
15
PsiBlast_PDB
59.47
25%
-50
- C2 -
-
2O42
-
?
A:
[57-138]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
Y
N
I
V
N
-
I
K
N
T
L
T
F
A
L
R
D
A
S
P
S
V
K
L
A
T
L
T
L
L
A
S
V
---------
I
K
K
L
N
K
I
QHTDAAMF
S
E
V
I
-
D
G
-
I
V
A
E
E
Q
Q
V
I
G
F
I
Q
K
-
K
C
K
Y
N
------
T
T
Y
Y
N
-
V
R
S
-----------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
57.26
23%
-
- C2 -
-
3EVU
-
A:
[337-430]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
-
K
M
K
D
T
D
S
E
E
E
I
R
E
A
F
R
-
V
F
D
K
D
G
N
G
Y
I
S
A
---
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
R
E
--------------------------------------------------------
5
PsiBlast_PDB
54.17
27%
68
- C2 -
-
1AHR
-
CALM_CHICK
A:
[34-123]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
-
K
M
K
D
S
------
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
G
F
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
----------------------------------------------------------
12
PsiBlast_PDB
53.57
25%
50
- C2 -
-
4IZ6
1
ENTE_ECOLI
A:
[504-623]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
A
V
Q
V
R
R
F
L
R
--------
E
Q
G
I
A
E
F
---------
K
L
P
-
D
R
-
V
E
C
V
D
S
L
P
L
T
A
V
G
K
V
D
K
K
Q
L
------
R
Q
W
L
A
-
S
R
A
S
A
G
----
P
A
S
K
A
A
L
R
E
V
I
L
P
L
L
D
E
S
D
E
P
F
DDDN
L
I
D
Y
G
L
D
S
V
R
M
M
A
L
A
A
R
W
R
K
V
-----
H
G
D
I
D
F
V
M
L
A
K
N
P
T
I
---------------------------
24
Fugue
53.35
15%
122
- C2 -
-
3IP4
-
GATB_STAAM
B:
[1-482]
M
H
F
E
T
V
I
G
L
E
V
H
V
E
L
KTDSKMFSPSPAHFGAEPNSNTNVIDLAYPG
V
L
P
V
V
N
K
R
A
V
D
W
A
M
R
A
A
M
A
L
N
M
E
I
A
T
E
S
K
F
D
R
K
N
Y
F
Y
PDNPKAY
Q
I
S
Q
F
DQPIGEN
G
Y
I
D
I
E
V
D
G
E
T
K
R
I
G
I
T
R
L
H
M
E
E
D
A
G
K
S
T
H
K
G
E
Y
S
L
V
D
LNRQG
T
P
L
I
E
I
V
S
EPDIRS
P
K
E
A
Y
A
Y
L
E
K
L
R
S
I
I
Q
Y
T
GVSDVKMEEGS
L
R
C
D
A
N
I
S
L
R
P
Y
GQEKF
G
T
K
A
E
L
K
NLNS
F
N
Y
V
R
K
G
L
E
Y
E
E
K
R
Q
E
E
E
L
L
N
G
G
E
I
G
Q
E
T
R
R
F
D
ESTG
K
T
I
L
M
R
V
K
E
GSDDYRYFPEPDI
V
P
L
Y
I
D
D
A
W
K
E
R
V
R
Q
T
IPEL
P
D
E
R
K
A
K
Y
V
NELGLP
A
Y
D
A
H
V
L
T
LT
K
E
M
S
D
F
F
E
S
T
I
E
H
GAD
V
K
L
T
S
N
W
L
M
G
G
V
N
E
Y
L
N
K
N
Q
V
E
L
L
D
T
K
L
T
P
E
N
L
A
G
M
I
K
L
I
E
D
---------
G
-----------------------
T
M
S
S
K
I
A
K
K
V
F
P
E
-
L
A
A
K
G
------
G
N
A
K
Q
-
I
M
E
D
N
G
L
V
Q
I
S
D
E
A
T
L
L
K
F
V
N
E
A
L
D
N
N
-------------------
E
Q
S
V
E
D
Y
K
N
G
K
-----
G
K
A
M
G
F
L
V
G
Q
I
M
K
A
S
K
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
K
R
LEHHHHH
10
PsiBlast_PDB
52.93
27%
64
- C2 -
-
1OSA
-
CALM_PARTE
A:
[34-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
S
L
M
A
R
-
K
M
K
E
Q
D
S
E
---
E
E
L
I
E
-
A
F
K
V
F
D
R
D
G
N
G
L
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
D
E
V
D
E
M
I
----------------------------------------------------------
11
PsiBlast_PDB
52.47
27%
62
- C2 -
-
1CLM
-
CALM_PARTE
A:
[34-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
S
L
M
A
R
-
K
M
K
E
Q
D
S
E
---
E
E
L
I
E
-
A
F
K
V
F
D
R
D
G
N
G
L
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
D
E
V
D
E
M
I
----------------------------------------------------------
16
PsiBlast_PDB
51.91
23%
-
- C2 -
-
3SG6
-
A:
[338-431]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
------S
E
E
E
I
-
R
E
A
F
R
-
V
F
D
K
D
G
N
G
Y
I
S
A
---
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
R
E
--------------------------------------------------------
8
PsiBlast_PDB
51.78
27%
66
- C2 -
-
1EXR
-
CALM_PARTE
A:
[34-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
S
L
M
A
R
-
K
M
K
E
Q
D
S
E
---
E
E
L
I
E
-
A
F
K
V
F
D
R
D
G
N
G
L
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
D
E
V
D
E
M
I
----------------------------------------------------------
14
PsiBlast_PDB
50.40
23%
78
- C2 -
-
3SG2
-
GFP_AEQVI
A:
[337-430]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
-
K
M
K
Y
T
DS
E
E
E
I
R
E
A
F
R
-
V
F
D
K
D
G
N
G
Y
I
S
A
---
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
R
E
--------------------------------------------------------
20
PsiBlast_PDB
50.37
23%
71
- C2 -
-
3EK7
-
A:
[337-430]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
-
K
M
K
D
T
D
S
E
E
E
I
R
E
A
F
R
-
V
F
D
K
D
G
N
G
Y
I
S
A
---
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
R
E
--------------------------------------------------------
17
PsiBlast_PDB
50.14
23%
72
- C2 -
-
3EK8
-
A:
[337-430]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
-
K
M
K
D
T
DS
E
E
E
I
R
E
A
F
R
-
V
F
D
K
D
G
N
G
Y
I
S
A
---
A
E
L
R
H
V
M
T
N
L
G
E
K
--------
L
T
D
E
E
V
D
E
M
I
R
E
--------------------------------------------------------
41
HHSearch
49.89
19%
-4
- C2 -
-
4YE8
-
SYQ_HUMAN
A:
[116-236]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--------
V
T
P
E
Q
I
E
E
A
V
E
A
A
I
N
R
H
R
P
Q
L
L
V
E
RY
H
F
N
M
G
L
L
M
G
E
A
R
A
V
L
-
K
W
A
D
G
K
M
I
K
N
E
V
D
M
Q
V
----------
9
PsiBlast_PDB
48.09
27%
-16
- C2 -
-
1N0Y
-
CALM_PARTE
A:
[34-87]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
M
R
S
L
G
Q
N
P
T
E
A
E
L
Q
D
M
I
N
E
V
---------
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
S
L
M
A
R
-
K
M
K
E
Q
D
S
E
---
E
E
L
I
E
---------------------------------------------------------------------------------------------------------
54
HHSearch
47.59
16%
-107
- C2 -
-
5EU0
-
?
B:
[18-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
------
R
E
A
V
D
-
A
A
I
S
T
H
A
I
E
G
I
T
L
H
S
K
T
L
E
I
L
E
G
Y
A
K
G
E
--------
Y
S
L
E
E
F
N
T
L
M
D
N
A
T
------------------------------------------------------
40
HHSearch
46.87
19%
14
- C- -
-
4YE6
-
SYQ_HUMAN
A:
[116-236]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--------
V
T
P
E
Q
I
E
E
A
V
E
A
A
I
N
R
H
R
P
Q
L
L
V
E
RY
H
F
N
M
G
L
L
M
G
E
A
R
A
V
L
-
K
W
A
D
G
K
M
I
K
N
E
V
D
M
Q
V
----------