@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKF4: (2017-10-26 )
MEKFVDDHHLKRKVGTLEMVVAMLLSGSIGLFVIKSGQSPINIVFFRCLISALCLIPICYFYGHFRKVYFGKKELFLMVTSGLLIIFNWVLLFAAFPKTSISLATIVYHVNPFVILFLGALVFHEKLNKNDVLWTIIAFIGLIVIIGLGSASVNSNELVGLGLVLIATTLYSISVLITKKLSNTPPLLIVFIQTLSGAIVMAPFISVFENPPIGQQWLFVVGLGVLHTAFLYYLMYSAIKKIPLNNIAILSFIYPISTIVIDYFFFDHVLTSTQVLGAGLILLGVLGVKLHWNIFAVKKVGIRN
Atome Classification :
(15 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---.-....20------........30.....-...40.---.......50--...---.....60........70........80........90........100.......110.......120.--------------------...-...130.......140......--.150--..----....----.160.-------......-170......--.180.-.-.....190.......200.......210--.-.......220.......230.........-240..---------------...--...250.......260--------...------.....270.......280......-.290---........300..------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEK
F
V
D
D
H
H
L
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KV---
G
-
T
L
E
M
V
V
------
A
M
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LSGS
I
G
L
F
V
I
KS-GQS
P
I
N
---
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V
F
F
R
C
L
I
S
--
A
L
C
---
L
I
P
I
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Y
F
Y
G
H
F
R
K
V
YFGK
K
E
L
F
L
M
VTS
G
L
L
I
I
F
N
W
V
L
L
F
AAFPKT
S
I
S
L
A
T
I
V
Y
HV
N
P
F
V
I
L
F
L
G
A
L
V
F
--------------------
H
E
K-LNKN
D
V
L
W
T
I
I
A
F
I
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L
I
V
I
IGL--GSAS--VN----SN
E
L
----
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G
L
-------
V
L
I
A
T
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-
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Y
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--
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LSN-T-P
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TLSG
A
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FEN-P--P-IG
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H
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--
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K-IP---------------LN
N
--
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I
---------
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F
------
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VLG
V
-
K
L
H
----
W
N
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F
A
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K
KVGIRN------------------------------------------------------------------
3
HHSearch
64.67
16%
-173
- C1 -
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5I20
3
?
E:
[2-292]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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--------------------
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------
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-----------------------------------------------------------------------
12
Fugue
63.72
15%
-176
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5I20
7
?
A:
[2-290]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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--------------------
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M
-
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-
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D
---------------
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--
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A
A
P
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L
---------
L
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V
------
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A
-
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----
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R
L
E
S
-------------------------------------------------------------------------
2
HHSearch
60.77
16%
-183
- C1 -
-
5I20
6
?
D:
[2-285]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
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S
---
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---
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A
F
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P
--------------------
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E
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-
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G
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FG
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A
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Y
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----
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G
Y
L
A
-------
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M
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-
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---------------
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--
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Y
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T
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---------
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V
------
A
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F
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A
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S
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A
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A
------------------------------------------------------------------------------
15
Fugue
55.54
21%
-145
- C1 -
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5MUW
2
P4_BPPH6
A:
[2-276]
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HRWP
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GAASAGGIVAV
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VNPMVDAEK
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A
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----
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------------------------------------------------------------------
16
Fugue
51.42
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4BWZ
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17
Fugue
49.30
17%
-147
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3WDO
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A:
[3-455]
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AEEEH
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DSKVTN
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R
QAL--------------
13
Fugue
42.63
25%
-379
- C1 -
-
2LR9
-
A:
[1-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
W
R
C
C
L
I
--
P
A
C
R
R
N
H
K
K
F
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.83
23%
-61
- C1 -
-
4O5P
-
?
A:
[3-813]
NFGFHIAPTHPVAGRLTYD
S
K
K
L
S
E
N
I
L
K
Q
Q
S
D
E
R
V
F
S
R
A
QC
C
K
A
I
H
I
T
L
G
F
D
G
TNNN
D
K
A
D
G
SSVS
P
S
C
S
N
V
A
R
L
I
H
A
SIGSG
D
D
I
N
S
R
G
I
F
K
Y
Y
C
P
G
VGTVFPDIKEFTPSNMGLIG
A
E
G
G
E
N
R
I
N
W
G
L
V
Q
L
V
D
A
L
F
Y
T
L
LKSRLK
L
N
D
V
Q
G
L
V
E
E
M
STN
W
T
V
S
TLT
G
G
L
L
E
N
G
E
K
K
R
R
A
A
L
E
P
K
L
K
E
L
E
E
K
L
R
Q
R
Q
N
S
GQKPHI
L
A
M
R
L
Y
I
Y
G
F
S
R
G
A
A
E
A
R
A
F
A
N
W
L
Q
E
L
T
RVSDADG
R
V
E
Y
R
F
AG
L
P
I
S
IE
F
L
G
L
F
DTVAAVGLP
F
A
A
G
H
MDWADDTMR
L
P
D
E
A
LPEDCSFLK
R
C
V
H
L
V
S
CHEQRAS
F
P
L
D
S
IRRRDMNGRRTG
P
S
C
Y
R
K
W
T
V
E
Y
A
Y
P
G
VHSDVGGGYGVGNQGKAVGGSEFLLS
Q
I
A
L
Q
H
M
Y
A
E
A
F
E
A
GAPLQVPEWRVMV
P
K
I
E
A
E
F
SVS
E
E
L
A
T
R
F
N
A
W
Q
A
Q
A
K
A
G
P
L
E
E
V
I
R
R
E
T
A
L
I
T
A
W
R
I
D
R
YAGGLRNK
A
F
F
A
N
VPPDMP
E
A
Q
Q
K
A
W
E
A
L
H
K
R
R
S
R
E
Y
A
A
A
Q
QLPPMS
A
A
E
Q
A
E
W
D
R
N
V
A
L
I
GGEDQLRDLRVEKQFDPPL
D
Q
R
Q
L
L
G
A
A
A
E
F
A
H
D
Y
K
G
D
W
G
V
LDD
G
M
T
V
G
G
V
I
------
D
L
L
L
G
G
T
V
F
L
I
N
E
E
D
-
E
A
E
E
Y
S
---
Q
I
H
R
D
G
S
A
R
--
Y
H
Q
---
L
------
F
S
A
P
D
R
V
A
P
G
Q
--------------
E
K
L
V
A
L
F
D
E
Q
V
H
D
S
R
A
---------
P
F
T
D
Y
F
R
Y
R
L
V
H
--------------------
F
D
---
N
E
S
N
K
R
L
S
V
L
A
T
A
G
R
V
V
G
V
G
V
----------------------------------------M
L
A
S
V
G
L
S
V
K
--
R
R
D
P
R
M
L
-
L
G
G
L
--------------
P
E
I
S
A
F
D
-----------------------------------------
P
---------------
L
T
G
--
I
A
L
P
M
---------
V
---------
G
G
A
------
A
L
D
N
L
R
A
F
T
R
E
P
G
D
K
V
E
Q
I
G
Q
L
P
P
-
P
P
P
----
L
A
V
A
A
V
Q
S
P
A
L
Q
Q
V
L
L
A
Q
Q
T
V----------------------------------------------------------
1
PsiBlast_PDB
40.47
21%
-149
- C1 -
-
5I20
3
?
A:
[83-249]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
A
L
K
L
A
P
P
A
E
A
G
L
V
A
Y
L
W
P
L
L
I
V
L
F
S
A
F
L
P
--------------------
G
E
R
-
L
R
P
A
H
V
A
G
A
L
M
G
L
A
G
T
V
V
L
L
G
A
--
R
A
G
G
--
F
G
F
---
A
P
E
Y
----
V
P
G
Y
L
-------
A
A
A
A
C
A
V
I
W
S
V
Y
S
V
A
S
--
R
R
F
A
R
-
V
-
P
T
E
V
V
A
G
F
C
L
A
T
A
A
L
S
A
L
C
H
I
-
L
F
E
P
-
S
VW
P
-
V
G
S
E
W
L
A
V
V
A
L
G
I
G
P
V
G
I
--
A
F
Y
T
W
D
I
G
M
-
K
R
-
G
D
---------------
V
R
L
--
L
G
V
L
S
Y
A
A
P
V
--------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
35.06
25%
-348
- C1 -
-
1IEN
1
A:
[1-19]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
W
R
C
C
L
I
--
P
A
C
R
R
N
H
K
K
F
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
27.96
19%
-150
- C1 -
-
5I20
3
?
E:
[3-141]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
----
S
A
T
L
I
-------
G
F
T
A
I
L
-
L
W
S
T
L
A
L
A
T
--
S
S
T
G
A
-
V
-
P
P
F
L
L
T
A
L
T
F
T
I
G
G
A
V
G
I
A
A
G
L
A
R
G
V
G
L
--
S
V
L
R
Q
P
W
P
-
V
W
V
H
G
I
G
G
L
F
G
--
Y
H
F
F
Y
F
S
A
L
-
K
L
-
A
P
---------------
P
A
E
--
A
G
L
V
A
Y
L
W
P
L
L
I
V
L
F
---------
S
A
F
------
L
P
G
E
R
L
R
P
A
H
V
A
G
A
L
M
G
L
A
G
T
V
V
L
-
L
G
A
----
R
A
G
----------------------------------------------------------------------------
20
Fugue
16.28
26%
-
* C1 *
-
4DAC
-
?
A:
[1-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
Y
K
L
D
A
N
V
---
K
-
R
L
E
K
E
V
------
G
K
L
E
G
E
V
A
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
13.55
26%
-28
- C1 -
-
1CDL
-
MYLK_CHICK
E:
[2-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
K
W
Q
K
T
G
H
A
V
R
A
I
---
G
-
R
L
S
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
11.13
14%
-
- C1 -
-
5AVY
-
?
G:
[25-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
A
V
L
C
V
I
G
I
I
I
L
-
L
A
G
----
K
------------------------------------------------------------------------------
11
HHSearch
10.93
14%
-
- C1 -
-
2ZXE
-
?
G:
[25-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
A
V
L
C
V
I
G
I
I
I
L
-
L
A
G
----
K
------------------------------------------------------------------------------