@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKG7: (2017-10-26 )
MTYFMTKSAVKRKNSDIKKPLHAQTGVVYRHSVEVNQMNTNNLSNQQQIIQSWFEPALHTLKALIKKCEENLERIKGDTKNAAVRREEFKEALARQHCITYNHAEEIIRSLSRVDRIRFLGSTYIQIKEGGEA
Atome Classification :
(20 SA)
-----------------------.........--10........20....-....30........---40........50........60-----.........70-----........80.....--...90...--.-....100-----.......----------110.......120.......130.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------M
T
Y
F
M
T
K
S
A
--
V
KRKNSDIKKPLHAQT-
G
V
V
Y
R
H
S
V
E
V
NQMN---TNNLS
N
Q
Q
Q
I
I
Q
S
W
F
E
P
A
L
H
T
------
L
K
A
L
I
K
K
C
E
E
N
-----
L
E
R
IKGDTKN
A
A
V
R
R
--
E
E
F
K
E
A
L
A
--R-QHCIT
Y
N
-----
H
A
E
E
I
I
R
----------
S
L
S
R
V
D
R
I
RFLG
S
T
Y
I
Q
IKEGGEA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
54.10
23%
-130
- C1 -
-
3AUY
-
?
A:
[161-221]
----------------------------------------------------------------------------------
F
E
K
C
Y
Q
K
------
M
G
E
I
V
K
E
Y
E
K
R
-----
L
E
R
I
E
G
E
L
N
----------
S
L
K
A
R
L
--
K
-
E
M
S
N
L
E
K
-----
E
K
E
K
L
T
K
----------
F
V
E
Y
L
D
K
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
53.38
25%
119
- C1 -
-
4CI7
10
?
A:
[4-470]
-----G
S
H
K
T
LDG
V
E
T
A
E
Y
S
E
S
Y
L
Q
Y
L
E
D
V
K
N
GD
T
A
K
Y
N
G
V
I
P
F
P
H
E
M
E
G
-
T
T
L
R
K
S
S
V
A
Y
N
P
M
D
LGL
T
T
P
A
K
N
Q
G
S
L
N
T
A
W
S
F
S
G
M
S
T
------
L
E
A
Y
L
K
L
K
G
Y
G
--------------------------------------
T
Y
D
-----
L
S
E
E
H
L
R
----------
W
W
A
----------------
T
G
G
K
Y
G
W
N
L
D
DM
S
G
S
S
NV
T
A
I
G
Y
L
T
A
WAGPKLEKD
I
P
Y
N
LKSEAQGATKPSNMDTAPTQ
F
N
V
T
D
V
V
R
L
N
KD
K
E
T
V
K
N
A
I
M
Q
YG
S
V
T
S
G
Y
A
H
Y
STYFNKDET
A
Y
N
C
TNKRAPLN
H
A
V
A
IVGWDDNYSKDNFASDVKPE
S
N
G
A
W
L
V
K
S
SWGEFNSMKG
F
F
W
I
S
YEDKTLLTDTD
N
Y
A
M
K
S
V
S
K
P
DSD
K
K
M
Y
Q
LEYAGL
S
K
I
M
S
N
K
V
T
A
A
N
V
F
DFSRDSEKLD
S
V
M
F
E
T
DSVG
A
K
Y
E
V
Y
Y
A
P
V
V
NGVPQNN
S
M
T
K
L
A
S
G
T
VSYS
G
Y
I
N
V
P
TNSYSLPK
G
K
G
A
I
V
V
V
I
D
NTANPNR
E
K
S
T
L
A
Y
E
T
D
I
D
GYYL
Y
E
A
K
A
N
L
GE
S
Y
I
L
Q
NNKFEDINTYSEFSPCNFV
I
K
A
I
T
K
T
S
7
PsiBlast_PDB
52.17
23%
-150
- C1 -
-
5DNY
-
?
B:
[161-221]
----------------------------------------------------------------------------------
F
E
K
C
Y
Q
K
------
M
G
E
I
V
K
E
Y
E
K
R
-----
L
E
R
I
E
G
E
--------------------
K
-
E
M
S
N
L
E
K
-----
E
K
E
K
L
T
K
----------
F
V
E
Y
L
D
K
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
48.99
23%
-88
- C1 -
-
3AV0
-
RAD50_METJA
B:
[161-221]
----------------------------------------------------------------------------------
F
E
K
C
Y
Q
K
------
M
G
E
I
V
K
E
Y
E
K
R
-----
L
E
R
I
E
G
E
L
N
----
Y
K
--------
R
L
--
K
-
E
M
S
N
L
E
K
-----
E
K
E
K
L
T
K
----------
F
V
E
Y
L
D
K
V
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
44.13
29%
-209
- C1 -
-
1WJA
-
POL_HV1Y2
A:
[20-40]
------------------------------------------------------------------------------------------------------------------------------------
R
A
M
A
--
S
-
D
F
N
L
P
P
V
-----
V
A
K
E
I
V
A
----------
S
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
43.99
13%
-10
- C1 -
-
2CWO
-
P21_BYVU
A:
[1-177]
M
K
F
F
L
KDGE
T
S
R
A
L
S
R
S
E
S
L
L
R
R
V
K
E
L
G
T
N
S
Q
--
Q
S
E
I
S
E
C
V
D
E
F
N
E
L
A
S
-
F
N
H
L
L
V
T
V
E
H
R
E
W
M
---
E
Q
R
I
G
E
M
L
K
E
I
R
A
F
L
K
V
R
V
V
T
PMHKET
A
S
D
T
L
N
A
F
L
E
E
-----
Y
C
R
I
T
G
L
A
R
E
D
A
L
R
E
K
M
R
K
V
K
S
V
V
L
--
F
-
H
H
S
E
L
L
K
F
E
V
T
E
N
M
F
S
Y
T
E
----------
L
L
K
L
N
L
S
L
R
V
I
S
S
Q
I
L
G
M
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
39.44
13%
-146
- C1 -
-
1HUU
-
DBH_GEOSE
A:
[1-40]
---------------------------------------------------------------------------------------------------------------------------
M
N
K
--
T
E
L
I
N
A
V
A
--
E
-
T
S
G
L
S
K
K
-----
D
A
T
K
A
V
D
----------
A
V
F
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.27
31%
-48
- C1 -
-
3NC5
1
CYPX_BACSU
A:
[95-167]
--------------------------
F
T
T
K
S
L
--
V
E
R
A
E
P
V
M
R
----------------------------
S
A
K
R
R
I
V
V
R
S
F
I
G
D
A
L
D
H
------
L
S
P
L
I
K
Q
N
A
E
N
L
L
APY
L
E
R
G
K
S
D
L
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
39.02
10%
-145
- C1 -
-
4YF0
-
DBHA_ECOLI
B:
[1-33]
--------------------------------------------------------------------------------------------------------------------------
H
M
N
K
--
T
Q
L
I
D
V
I
A
--
E
-
K
A
E
L
S
K
T
-----
Q
A
K
A
A
L
E
----------
S
T
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
38.08
15%
-159
- C1 -
-
2MA3
-
?
A:
[621-660]
--------------------------------------------------------------------------------------------------------------------------
R
A
P
T
--
N
I
L
I
T
E
M
M
--
D
-
R
Y
N
V
S
E
E
-----
K
V
E
E
L
I
R
----------
I
L
K
D
K
G
A
I
F
E
P
A
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.01
34%
83
- C1 -
-
1TUA
-
?
A:
[139-184]
------------------------------------------------------------------------------------------------------------------
I
I
G
D
Y
E
R
A
M
A
A
K
--
Q
A
I
-
E
M
L
A
E
G
R
-
M
H
S
T
V
Y
R
-----
H
L
E
R
I
M
R
----------
E
I
K
R
R
E
R
L
K
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
38.00
25%
-266
- C1 -
-
1OEF
-
?
?:
[263-286]
--------------------------------------------------------------------------------
S
W
F
E
P
L
V
E
D
------
M
Q
R
Q
W
A
G
L
V
E
K
-----
V
Q
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
36.86
10%
-114
* C1 *
-
4P3V
-
DBHB_ECOLI
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------------
M
N
K
--
S
Q
L
I
D
K
I
A
--
A
-
G
A
D
I
S
K
A
-----
A
A
G
R
A
L
D
----------
A
I
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
36.64
18%
-126
- C1 -
-
2NDP
-
?
A:
[3-35]
-----------------------------------------------------------------------------------------------------------------------
K
I
K
S
L
S
A
--
A
E
Y
L
K
E
M
A
--
D
-
E
T
N
I
K
V
Q
-----
D
I
R
L
V
V
T
----------
S
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
35.02
31%
28
- C1 -
-
3NC3
1
CYPX_BACSU
A:
[95-171]
--------------------------
F
T
T
K
S
L
--
V
E
R
A
E
P
V
M
R
-----------------------------
A
K
R
R
I
V
V
R
S
F
I
G
D
A
L
D
H
------
L
S
P
L
I
K
Q
N
A
E
N
L
L
APY
L
E
R
G
K
S
D
L
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
34.24
23%
-193
- C1 -
-
2J5O
-
FTSK_PSEAE
A:
[766-796]
------------------------------------------------------------------------------------------------------------------------------------
S
A
V
Q
--
R
-
K
L
K
I
G
Y
N
-----
R
A
A
R
M
I
E
----------
A
M
E
M
A
G
V
V
T
P
M
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
34.09
17%
-76
- C1 -
-
1P71
-
DBH_NOSS1
B:
[1-30]
---------------------------------------------------------------------------------------------------------------------------
M
N
K
--
G
E
L
V
D
A
V
A
--
E
-
K
A
S
V
T
K
K
-----
Q
A
D
A
V
L
T
----------
A
A
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
34.06
10%
-115
- C1 -
-
4YFT
-
DBHB_ECOLI
A:
[1-44]
---------------------------------------------------------------------------------------------------------------------------
M
N
K
--
S
Q
L
I
D
K
I
A
--
A
-
G
A
D
I
S
K
A
-----
A
A
G
R
A
L
D
----------
A
I
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
33.90
14%
73
- C1 -
-
2JYN
-
YP225_YEAST
A:
[1-146]
-----------------------
M
S
T
F
N
A
E
T
A
--
D
N
L
E
D
I
E
K
Q
F
A
V
V
A
V
E
Q
A
E
T
Y
W
K
L
L
T
S
V
P
G
S
---
K
L
R
L
T
K
F
D
D
E
I
Y
E
N
F
M
E
R
F
P
E
------
Y
K
D
-----
V
E
R
-----
V
K
K
F
T
E
E
E
L
K
T
K
E
A
K
--
E
R
W
R
K
F
F
T
--
I
F
E
K
K
I
E
D
Y
-----
N
F
G
T
L
L
R
TDASAEYGQF
T
T
C
F
V
V
R
L
Q
F
Y
A
F
E
I
A
R
N
K
H
G
L
N
D
W
I
V
G
QK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
32.68
18%
12
- C1 -
-
2F95
-
HTR2_NATPH
B:
[24-76]
---------------------------------------------------------------------------------
I
F
V
G
A
L
T
V
------
L
F
G
A
I
A
Y
G
E
V
T
-----
A
A
A
A
T
G
D
A
A
A
V
Q
E
A
A
--
V
S
A
I
L
G
L
I
--
I
-
L
L
G
I
N
L
G
-----
L
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------