@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKH5: (2017-10-26 )
MMSSVSIAEYRKLFPIKKNKKRRSAKQVARQLSVGEMVLATHLRACKIGFEQEYKFHPKRKWRADFLITGTKILVEVEVGIWSGGRHTRGKGYLGDMEKYNSAAMMGFTVLRFSTEQVKSGVAIKQIEQLVG
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40.......---.50...---..---.----.---.60-........70--.........80.----......-------------.---------------.90........100........110-.....-----------....120------..-.....130--------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMSSV
S
I
A
E
Y
R
K
LFPIKK
N
K
K
R
R
S
A
K
Q
V
A
R
QLSV
G
E
M
V
L
A
T
H
L
R
A
C
KI---GFEQEY---KF---H----P---KR
K
-
W
R
A
D
F
L
I
TG---
T
K
I
L
V
E
V
E
V
G
-
I
----WSGGRH-------------T---------------RGKGYLG
D
M
E
K
YN-
S
A
A
M
M
G
F
T
V
---
L
R
F
S
T
-----------
E
Q
V
KSG
V
------
A
I
-
K
Q
I
E
Q
L
VG--------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
75.00
23%
0
- C- -
-
2D3A
-
GLNA3_MAIZE
A:
[3-355]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
L
T
D
L
V
N
LNLSDTTE
K
I
I
A
E
Y
I
W
I
G
GSGM
D
L
R
S
K
A
R
T
L
PGPVTDPSK
L
P
K
W
N
Y
DGSSTGQAPGEDS
E
V
I
L
Y
P
Q
A
IFKDPFRRGN
N
I
L
V
M
C
D
C
Y
T
P
A
G
E
----
P
I
P
T
N
K
R
Y
S
A
A
K
I
F
S
S
P
E
V
A
A
E
E
P
--------
W
Y
---
G
I
E
Q
E
Y
---
T
L
---
L
----
Q
---
K
D
T
-
N
W
P
L
G
W
P
I
G
---
G
F
P
G
P
Q
G
P
Y
Y
-
C
----
G
I
G
A
E
K
-------------
S
---------------
F
G
R
D
I
V
D
A
H
--
Y
K
-
A
C
L
Y
A
G
I
N
I
---
S
G
I
N
G
-----------
E
-----
V
------
M
P
-
G
Q
W
E
F
Q
V
G
PSVG
I
S
S
G
D
Q
V
W
V
A
R
Y
I
L
E
R
I
T
E
I
A
G
V
V
V
T
FDPKPIPGD
W
N
G
A
G
A
H
T
N
Y
S
T
ESMRKEGG
Y
E
V
I
K
A
A
I
E
K
L
K
L
R
H
K
E
H
I
A
A
YGEGNERRLTGRHETADIN
T
F
S
W
G
V
ANRGAS
V
R
V
G
R
E
T
E
Q
N
G
K
G
Y
F
E
DRRPASNMD
P
Y
V
V
T
S
M
I
A
E
T
T
IVWK
10
HHSearch
67.76
16%
-67
- C5 -
-
1CW0
3
VSR_ECOLI
A:
[9-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
K
N
M
R
A
I
A
T
R
D
T
A
I
E
K
R
L
A
S
L
L
T
G
Q
G
L
---
A
F
R
V
Q
D
---
A
S
-------------
L
P
-
G
R
P
D
F
V
V
D
E
---
Y
R
C
V
I
F
T
H
G
C
-
F
----
W
H
H
H
H
C
Y------------
L
FKVPATR
T
E
F
W
L
E
K
-
I
G
K
N
V
E
R
D
R
R
D
I
S
-
R
L
Q
E
L
G
W
R
V
---
L
I
V
W
E
-----------
C
A
L
R
G
R
E
KLT
D
E
A
L
T
-
E
R
L
E
E
W
I
---------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
65.12
25%
-23
- C5 -
-
3HRL
-
?
A:
[3-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
S
E
A
E
A
K
L
W
Q
H
L
R
A
G
R
L
NG
Y
K
F
R
R
Q
Q
---
P
-------------
M
G
N
-
Y
I
V
D
F
M
C
V
T
---
P
K
L
I
V
E
A
D
G
-----------------------------------------------
V
Y
D
H
A
R
T
V
-
Y
L
N
S
L
G
F
T
V
---
L
R
F
W
N
-----------
H
E
I
L
Q
Q
T
N
D
----
V
L
-
A
E
I
L
R
V
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
61.47
18%
-
* C5 *
-
3R3P
-
?
A:
[167-263]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
P
E
R
R
V
K
E
I
L
D
E
M
D
I
V
------------
Y
---
F
T
---
H
----
H
---
V
V
E
-
G
W
N
V
A
F
Y
L
G
---
K
K
L
A
I
E
V
N
G
V
-
Y
----
W
----
A
-------------
S
---------------
K
Q
K
N
V
N
K
D
K
R
K
L
S
-
E
L
H
S
K
G
Y
R
V
---
L
T
I
E
D
-----------
D
E
L
N
D
I
D
------
K
V
K
Q
Q
I
Q
K
F
W
V
T
H
I
S----------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
61.24
20%
-49
* C6 *
-
5EZM
24
?
A:
[28-578]
SAA
T
G
W
V
V
L
F
V
A
V
A
L
V
V
W
F
V
S
L
D
MRHLVGP
D
E
G
R
Y
A
E
I
S
R
E
M
F
A
S
GDWV
T
I
R
Y
NALKYFEKPP
F
H
M
W
V
T
V
V
G
Y
E
L
FGLG
E
W
Q
A
R
L
A
V
A
L
S
G
L
L
G
I
G
V
S
M
M
A
A
R
R
W
FG
A
R
A
A
A
F
T
G
L
A
L
L
A
A
P
M
W
S
V
A
A
H
FNTL
D
M
T
L
A
G
V
M
S
C
V
L
A
F
M
L
M
G
Q
HPDAS
V
A
A
R
R
G
W
M
V
A
C
W
A
A
M
G
V
A
I
L
T
KGL
V
G
I
A
L
P
G
L
V
L
V
V
Y
T
L
V
T
RDWGLWRRLH
L
A
L
G
V
V
V
M
L
V
I
TV
P
W
F
Y
L
V
S
V
R
N
PE
F
P
N
F
F
F
I
HEHWQRRSGSVFYF
L
P
L
V
I
G
G
F
LPWAGI
F
P
K
L
W
T
A
M
R
ARFR
P
A
L
M
A
G
I
W
A
I
A
I
F
V
F
F
S
I
SRSKLPGYIVPV
I
P
A
L
G
I
L
A
G
V
A
L
D
-------------
R
L
S
P
R
S
W
G
K
Q
L
I
G
M
A
I
V
A
A
C
G
L
L
A
S
P
V
---
V
A
T
L
N
A
---
N
----
H
----
I
---
P
N
S
-
F
Y
R
A
Y
A
V
W
V
---
A
V
A
F
V
V
M
L
L
G
-
I
-----
A
V
A
R
L
-------------
L
---------------
L
R
R
G
V
L
P
S
V
A
V
Y
A
-
M
G
M
Y
L
G
F
T
V
---
A
L
L
G
H
-----------
E
T
V
G
R
P
A
------
S
G
-
A
D
I
A
P
Q
I
A
Q
K
LTPEMPLYGVQMLDHT
L
P
F
Y
L
RHPLMMVGQADEL
T
F
G
A
T
V
E
PQRVVPD
V
D
S
F
T
K
L
W
K
NG
Q
P
A
M
A
V
M
S
P
D
T
Y
L
A
L
A
PT
L
S
M
Y
V
VARDWR
R
V
V
V
A
NVASLAGPQ------------------------------------------------
14
HHSearch
60.47
16%
-86
- C5 -
-
1VSR
-
VSR_ECOLI
A:
[3-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
E
K
R
L
A
S
L
L
T
G
Q
G
L
---
A
F
R
V
Q
D
---
A
S
-------------
L
P
-
G
R
P
D
F
V
V
D
E
---
Y
R
C
V
I
F
T
H
G
C
-
F
----
W
H
H
H
H
C
-------------
Y
L
F
K
V
P
ATR
T
E
F
W
L
E
K
I
G
K
N
V
E
R
D
R
R
D
I
S
-
R
L
Q
E
L
G
W
R
V
---
L
I
V
W
E
-----------
C
A
L
R
G
R
E
KLT
D
E
A
L
T
-
E
R
L
E
E
W
I
---------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
60.28
17%
-
- C5 -
-
3R3P
-
?
A:
[167-258]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
P
E
R
R
V
K
E
I
L
D
E
M
D
I
---
V
Y
F
T
H
H
---
V
V
-------------
E
--
G
W
N
V
A
F
Y
L
G
---
K
K
L
A
I
E
V
N
G
V
-
Y
----
W
A
S
K
Q
--------------------------------
K
N
V
N
K
D
K
R
K
L
S
-
E
L
H
S
K
G
Y
R
V
---
L
T
I
E
D
-----------
D
E
L
N
D
I
D
K
-----
V
K
-
Q
Q
I
Q
K
F
W
---------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
57.34
31%
-56
- C5 -
-
3HRL
-
?
A:
[5-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
A
E
A
K
L
W
Q
H
L
R
A
G
R
L
---
N
---
G
Y
---
K
F
R
R
Q
Q
----
P
---
M
G
N
-
Y
I
V
D
F
M
C
V
T
---
P
K
L
I
V
E
A
D
----------
G
-----------------------------------
V
Y
--
D
H
A
R
T
V
-
Y
L
N
S
L
G
F
T
V
---
L
R
F
W
N
-----------
H
E
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
53.99
17%
-
- C5 -
-
3R3P
-
?
B:
[166-258]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
T
P
E
R
R
V
K
E
I
L
D
E
M
D
I
---
V
Y
F
T
H
H
---
V
V
-------------
E
--
G
W
N
V
A
F
Y
L
G
---
K
K
L
A
I
E
V
N
G
V
-
Y
----
W
A
S
K
Q
--------------------------------
K
N
V
N
K
D
K
R
K
L
S
-
E
L
H
S
K
G
Y
R
V
---
L
T
I
E
D
-----------
D
E
L
N
D
I
D
K
-----
V
K
-
Q
Q
I
Q
K
F
W
---------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
51.64
15%
-17
- C5 -
-
4OQ2
-
?
A:
[26-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
K
R
W
E
H
Y
I
I
N
R
V
V
H
T
L
D
D
P
D
I
---
E
F
V
C
Q
Q
---
C
I
---
R
----
K
EGH
L
G
K
I
Y
L
A
D
L
L
F
P
Q
---
L
N
L
Y
L
E
I
D
E
A
-
H
----
H
D
S
N
---------------------------------
D
A
R
K
A
D
A
V
R
R
L
D
I
V
E
A
T
G
F
Q
E
---
E
R
I
P
A
SNIT
L
------
S
E
V
N
K
L
V
D
E
----
F
V
-
R
L
V
K
D
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
47.48
15%
-5
- C5 -
-
4PAR
-
?
C:
[24-154]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
E
A
Y
V
V
S
R
I
I
H
L
L
N
D
F
T
L
---
K
F
V
T
Q
Q
---
F
V
---
R
----
L
SN-
K
K
I
-
A
L
T
D
L
Y
F
P
Q
---
L
G
I
H
I
E
V
D
E
G
-
H
----
H
F
L
R
N
S
KMEYSLNQIDEPL
Y
---------------
S
I
S
Q
T
E
S
D
A
M
R
E
E
D
I
I
S
I
T
G
H
K
I
---
F
R
V
N
V
FKNQEGQPQNL
E
N
I
H
Q
Q
I
DK----
I
I
-
E
E
I
K
T
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
40.76
19%
18
- C7 -
-
4R80
-
?
A:
[1-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
E
E
E
E
K
R
R
A
K
Q
V
A
K
E
K
I
L
E
Q
N
-------
P
S
S
K
V
---
Q
V
R
R
V
Q
---
K
Q
---
G
----
N
---
T
I
R
-
V
E
L
E
I
T
E
N
G
---
K
K
T
N
I
T
V
E
V
E
-
K
Q
GN
T
F
T
V
K
R
I
-------------
T
---------------
E
T
V
G
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
38.87
29%
-26
- C5 -
-
4RSI
-
A:
[244-317]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
I
---
T
F
---
H
----
P
---
K
I
R
-
A
R
S
---
I
T
L
---
Q
G
D
V
Y
D
P
E
-
G
-
T
----
L
S
G
G
S
R
-------------------------------
E
S
L
L
V
D
I
Q
K
Y
N
-
Q
I
Q
K
Q
I
E
T
I
Q
A
D
L
N
H
V
T
-----------
E
E
L
Q
T
Q
Y
------
A
T
-
S
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
36.55
24%
-262
- C5 -
-
1JG5
-
GFRP_RAT
E:
[56-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
K
L
E
C
R
G
F
R
V
---
L
S
M
T
G
-----------
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
35.91
25%
-110
- C5 -
-
1M0D
-
ENDO_BPT7
D:
[6-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
L
E
D
K
V
S
K
Q
L
E
S
K
G
I
---
K
F
E
Y
E
E
WKV
P
Y
---
V
IPA-
S
---
N
H
T
-
Y
T
P
D
F
L
L
P
N
----
G
I
F
V
E
T
K
G
L
-
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
35.69
10%
-19
- C5 -
-
3BM3
2
?
A:
[97-177]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
R
G
G
K
A
F
E
I
I
F
T
K
L
L
N
K
F
G
I
---
R
Y
E
H
D
R
---
V
I
---
K
IYDY
I
---
T
E
G
-
E
K
P
A
F
I
I
P
S
---
V
R
T
F
L
N
D
P
S
S
-
A
----
I
L
I
--------------------------------
T
V
K
R
K
V
R
E
R
W
R
E
A
-
V
G
E
A
Q
I
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
34.13
51%
114
- C5 -
-
2QGM
-
?
A:
[211-258]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
Q
E
Y
M
K
L
T
P
K
L
K
E
K
F
K
A
N
A
E
R
V
A
R
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
33.15
10%
-15
- C5 -
-
3BM3
2
?
B:
[97-177]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
R
G
G
K
A
F
E
I
I
F
T
K
L
L
N
K
F
G
I
---
R
Y
E
H
D
R
---
V
I
---
K
IYDY
I
---
T
E
G
-
E
K
P
A
F
I
I
P
S
---
V
R
T
F
L
N
D
P
S
S
-
A
----
I
L
I
--------------------------------
T
V
K
R
K
V
R
E
R
W
R
E
A
-
V
G
E
A
Q
I
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
33.01
12%
-0
- C5 -
-
4QBN
-
?
B:
[3-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
G
R
V
Q
K
Y
A
K
E
R
F
E
A
L
G
G
---
L
V
R
K
L
S
--------
Y
----
E
---
G
R
S
-
G
A
P
D
L
L
V
I
L
PRG
V
I
W
F
V
E
V
K
K
D
E
N
----
T
K
P
D
--------------------------------
P
H
----
Q
L
R
E
H
E
-
R
F
R
K
R
G
A
N
V
---
F
V
V
G
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
32.94
36%
-123
- C3 -
-
2JOE
-
YEHR_ECOLI
A:
[87-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
M
E
K
V
D
-
F
K
A
L
Q
G
I
S
G
---
I
N
V
S
A
-----------
E
D
A
K
K
G
I
------
T
M
-
A
Q
M
E
------------------------------------------------------------------------------------------------------------------------------------------------------------