@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKJ2: (2017-10-26 )
MAGCGCASTCSPTKKASPRFRKALWIALVINALMFVVEIVGGYQAQSVSLWADALDFAGDAANYALSLVVLSMSLYWRATAALVKGITMAAFGFFVIAKVVWSFFHGVSPEPMVMGAIGVIALIANVSVALMLYAFRDGDANMRSVWLCSRNDSIANIAVVLAAVGVFGTGTIFPDLFVAFVIAYLGVSSGYAVIKQSLQERKQSKLMLGSEA
Atome Classification :
(17 SA)
---------------------------------------------------------------------------------------.....-....10..---------......20...-----.-----....30........40.....----...50.-.-......60........70....------------.---...-------80........---90..--....---------..100.-----......110.-.-.....120.....-----..130...-------------------------.------..-.140--....---.....--150.....----------.----.160..--------------.....170.------...-----...180----------.......-.190.....-..200.......210.---------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------MAGCG-CASTCSPT---------KKAS
P
R
F
R
K
A
L
-----
W
-----
I
A
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E
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VGGYQAQ----
S
V
S
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W
A
-
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-
A
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DFAG
D
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A
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A
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M
S
L
------------
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---
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-------
T
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V
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G
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---
A
A
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--
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I
---------
A
K
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-----
F
FHGVSP
E
P
M
-
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-
M
G
A
I
G
V
I
A
L
I
A
N
V
-----
S
V
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L
M
L
Y
A
-------------------------F------RD-GD----AN
M
R
---
S
V
W
L
C--SRNDS
I
A
N
----------
I
----
A
V
V
L
A
A
--------------
V
G
VFGTGTI------
F
P
D
-----
L
F
V
A
F
-----------
V
I
A
Y
L
GV-SS
G
Y
A
V
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K
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-
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L
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E
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K
Q
S
K
LMLGSEA---------------------------------------------------------------------------
13
Fugue
73.95
16%
-38
* C7 *
-
2MHK
-
LPOA_ECOLI
A:
[1-250]
------------------------------------------------------------------------MGSSHHHHHHSS
G
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M
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-----
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SS
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----
A
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-
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------------
A
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---
A
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-
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-------------------------
A
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---
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ADEN
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A
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A
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T
---------------------------------------------------------------------------
4
HHSearch
70.12
19%
-115
- C8 -
-
3H90
-
FIEF_ECOLI
B:
[2-207]
--------------------------------------------------------------------------------------------------------------------
V
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I
-----
A
A
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M
A
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----
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-
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QPADDNHSFGHG
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---
A
E
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-------
L
A
A
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A
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M
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I
---
S
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--
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---------
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-----
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V------------------------
V
------
R
R
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----
Q
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---
A
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--
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----------
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----
A
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A
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--------------
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-
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------
R
A
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-----
A
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A
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-----------
G
I
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E
-
A
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D
E
E
-----------------------------------------------------------------------------
3
HHSearch
67.57
16%
-109
- C8 -
-
3J1Z
-
?
Q:
[300-511]
----------------------------------------------------------------------------------------------------
T
---------
S
Q
Y
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-----
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-----
A
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----
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I
VPADHDHRYGHG
K
---
A
E
P
-------
L
A
A
L
A
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S
A
F
I
---
M
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A
--
F
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---------
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E
R
-----
L
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-
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Q
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R
A------------------------
L
------
A
A
T
N
S
----
T
V
V
E
---
A
D
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--
Y
K
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D
L
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L
N
----------
A
----
A
V
L
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A
L
--------------
V
L
S
Q
-
Y
G
W
W
------
W
A
D
-----
G
L
F
A
V
-----------
L
I
A
C
Y
I
G
-
Q
Q
A
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-
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D
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E
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E
D
------------------------------------------------------------------------------
21
Fugue
65.14
18%
-67
- C6 -
-
19HC
11
CYC9_DESDA
A:
[1-292]
---------------------------------------------------------------------------------AALEPT
D
S
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A
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S
A
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F
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---------
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A
A
-----
M
-----
K
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HTGD
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A
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E
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TTPKDD
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C
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SPMLAPYKVVIDALADK
Y
------
E
P
-
S
D
FT
H
R
R
H
L
T
---
S
L
M
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--
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D
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K
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A
Q
----------
A
F
H
DK
P
E
I
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C
A
TCHHRSPLSLTPPK
C
G
S
C
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K
E
I
DAADPG
R
P
N
-----
L
M
A
A
Y
-----------
H
L
E
C
M
G
C
-
H
K
G
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--
A
-
R
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C
T
T
C
H
K
A
A
A
----------------------------------------------------------------------------
1
PsiBlast_PDB
52.64
28%
-130
- C8 -
-
3H90
-
FIEF_ECOLI
A:
[97-201]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
I
S
P
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-
T
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---
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----
A
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-
A
--------------
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------
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-
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--------------------------------------------------------------------------------------
17
Fugue
52.46
13%
-
- C7 -
-
3ZPJ
-
?
A:
[1-356]
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N
L
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GY
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YEIED
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DGPMEW
I
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LRD
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IQN
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KKFEE
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IPD
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GTIE
2
PsiBlast_PDB
49.59
28%
-104
- C8 -
-
2QFI
-
FIEF_ECOLI
A:
[104-208]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
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--------------------------------------------------------------------------------------
5
HHSearch
47.28
21%
-130
- C8 -
-
3H90
-
FIEF_ECOLI
B:
[112-202]
----------------------------------------------------------------------------------------------------------------------
I
V
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I
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A
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G
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YGWH--------
R
---
A
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
46.66
5%
-56
- C7 -
-
1OYZ
-
YIBA_ECOLI
A:
[5-280]
----------------------------------------------------Y
Q
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A
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KE
Y
G
L
Y
N
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C
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LN
D
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DDHN
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------------
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---
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---
I
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RS-----------------------------------------------------------------------
10
HHSearch
41.58
23%
-57
- C5 -
-
1DEC
-
DECO_MACDE
A:
[15-27]
------------------------------------------------------------------------------------------
C
L
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C
N
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Q
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
37.38
15%
-115
* C8 *
-
3J1Z
-
?
Q:
[419-507]
------------------------------------------------------------------------------------------------------------------------
S
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V
-----
V
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----
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YGWW--------
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---
A
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-------
L
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I
A
C
Y
I
---
G
Q
Q
A
--
F
D
L
G
---------
Y
R
S
I
Q
A
-----
L
L
D
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
37.22
29%
-21
- C3 -
-
1WM8
-
A:
[1-28]
----------------------------------------------------------------------------------------
V
G
C
E
E
C
P
M
H
C
K
G
----------
K
N
A
N
P
T
C
D
D
G
V
-----
C
-----
N
C
N
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
34.83
18%
-106
- C2 -
-
1ZTO
-
KCNA4_RAT
A:
[11-21]
----------------------------------------------------------------------------------------
S
G
C
N
-
S
H
M
P
Y
G
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
27.05
8%
-
- C- -
-
4LQ8
-
?
A:
[49-360]
-----------------------------------E
A
D
D
G
F
I
V
T
SNISPDSQTSD
P
I
T
K
A
V
R
E
T
I
I
Q
P
Q
K
D
N
L
I
E
Q
I
L
K
D
L
A
A
LTD
R
D
L
A
E
Q
-
K
R
K
E
I
E
E
E
---------
K
E
K
D
K
T
L
S
T
F
F
G
NP--
A
-----
N
R
E
F
I
D
K
A
L
E
K
P
E
L
K
K
K
L
E
S
I
----
E
I
A
G
Y
K
-
N
-
V
H
N
T
F
S
A
A
S
G
Y
P
G
G
F
K
P
V
Q
W
E
N
------------
H
---
V
S
A
-------
S
D
L
R
A
T
V
V
K
N
---
D
A
G
D
--
E
L
C
T
---------
L
N
E
T
T
V
KT
K
P
F
T
L
A
K
Q
D
G
T
Q
V
-
Q
-
I
S
S
Y
R
E
I
D
F
P
I
K
L
D
Q
A
D
G
S
M
H
L
S
M
V
A
-------------------------
L
------
K
A
-
D
G
----
T
K
P
S
KDK
A
V
Y
F
T
--
A
H
Y
E
E
G
P
N
----------
G
----
K
P
Q
L
K
E
--------------
I
S
S
P
K
P
L
K
F
------
A
G
T
GDD
A
I
A
Y
I
E
H
GG---------
E
I
Y
T
L
A
V
T
R
G
K
Y
K
E
M
M
K
-
E
V
E
L
N
Q
G
Q
S
V
D
L
S
Q
A
E
D
I
I
I
G
QGQ-------------------------------------------------------------------
14
Fugue
23.13
26%
238
- C8 -
-
4XGC
-
F:
[38-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
Y
E
I
W
K
A
-
R
M
L
A
K
A
Q
A
K
L
K
--------------------------------------------------------------------------------
19
Fugue
12.77
36%
-
- C4 -
-
2XQN
-
ACL7A_HUMAN
A:
[28-49]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
T
A
S
-------------------------
L
------
R
D
-
G
P
----
A
K
-
R
---
A
V
W
V
R
--
H
T
S
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
10.49
12%
-
- C1 -
-
2LK9
-
BST2_HUMAN
A:
[35-45]
------------------------------------------------------------------------------------------------------------------------------------------
V
I
L
G
V
P
L
I
I
F
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------