@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKK0: (2017-10-26 )
MARRPKRYTEEDFDSLEGRASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALLEVQNISSFEARRRQFQRVGKLLRNEDETVILSYLTPQQGAKKQAQLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQVAEADLEATKMKFINYVQQVALLSDQG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.......20------------------.....-...30......--------------..40...---.....50.....--...60......-..70.......--.80.-......------.90.....-------...100------..-----.-----.----...110---......-----------------..120.......130.....------..140......---.150.....---..160.-......--170......-------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MARRPKRY
T
E
E
D
-
F
D
S
L
EGRAS------------------
K
T
E
Q
K
-
K
A
V
Q
R
M
A
A
L
G
E
--------------
Q
L
A
Q
L
S
I
---
K
Q
I
Q
KLPV
D
E
R
L
--
I
D
A
L
L
E
V
QNI
S
-
S
F
E
A
R
R
R
Q
F
Q
R
--
V
G
K
L
-LRNED
E
------
T
V
I
L
S
Y
LT-------PQQG
A
K
------
K
Q
-----
A
-----
Q
----
L
M
R
W
V
----
D
R
M
I
EQ-----------------GD
P
A
I
N
E
F
S
K
I
YNA
S
E
R
H
T
L
------
R
Q
H
V
L
RIN
R
D
K
---
T
Q
Q
V
A
E
A
D
L
---
E
A
T
K
M
K
-
F
I
N
Y
V
Q
--
Q
V
A
LLSDQG-------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
84.18
31%
-34
- C4 -
-
2P0T
4
Y4464_PSESM
A:
[25-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
A
L
V
D
L
G
E
--------------
R
L
T
T
L
K
A
---
D
V
L
A
K
L
P
L
T
D
A
L
--
R
K
A
L
A
E
A
P
K
H
T
-
A
N
I
A
R
K
R
H
I
L
F
--
I
G
K
L
-
M
R
D
Q
D
Q
------
E
A
I
L
V
L
L
D
-------
Q
L
D
A
S
T
------
R
Q
-----
Y
N
E
R
F
H
N
----
L
E
R
W
R
----
D
R
L
I
A
G
-----------------
D
D
A
D
L
E
K
F
V
I
E
Y
P
D
A
D
R
Q
Q
L
------
R
S
L
I
R
Q
A
Q
H
E
V
---
A
----
R
N
K
P
---
P
A
T
S
R
K
-
I
F
K
Y
I
R
--
E
L
D
E
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
82.69
31%
-50
- C4 -
-
2P0T
4
Y4464_PSESM
A:
[25-168]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
A
L
V
D
L
G
E
--------------
R
L
T
T
L
K
A
---
D
V
L
A
K
L
P
L
T
D
A
L
--
R
K
A
L
A
E
A
P
K
H
T
-
A
N
I
A
R
K
R
H
I
L
F
--
I
G
K
L
-
M
R
D
Q
D
Q
------
E
A
I
L
V
L
L
D
-------
Q
L
D
A
S
T
------
R
Q
Y
N
E
R
F
H
-----
N
----
L
E
R
W
R
----
D
R
L
I
A
G
-----------------
D
D
A
D
L
E
K
F
V
I
E
Y
P
D
A
D
R
Q
Q
L
------
R
S
L
I
----
R
Q
A
---
Q
H
E
V
A
R
N
K
P
---
P
A
T
S
R
K
-
I
F
K
Y
I
R
--
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
69.61
22%
-16
- C4 -
-
2P0T
4
Y4464_PSESM
A:
[25-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
A
L
V
D
L
G
E
--------------
R
L
T
T
L
K
A
---
D
V
L
A
K
L
P
L
T
D
A
L
--
R
K
A
L
A
E
A
P
K
H
T
-
A
N
I
A
R
K
R
H
I
L
F
--
I
G
K
L
M
R
D
Q
D
Q
E
------
A
I
L
V
L
L
D
Q
-------
L
D
A
S
T
R
------
Q
Y
-----
N
-----
E
R
F
H
N
L
E
R
W
R
----
D
R
L
I
A
G
-----------------
D
D
A
D
L
E
K
F
V
I
E
Y
P
D
A
D
R
Q
Q
L
------
R
S
L
I
R
Q
A
Q
H
E
V
---
A
R
N
K
P
P
A
T
S
---
R
K
I
F
K
Y
-
I
R
E
L
D
E
--
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
58.87
22%
80
- C4 -
-
3WOL
7
DAPB2_PSEMX
A:
[1-696]
GEGMWVPQQLPEI
A
G
P
L
K
K
A
GLKLS
P
Q
Q
I
S
DLTGDPMGAVVALGG
C
T
A
S
F
VSPNG
L
V
V
T
N
HHCA
Y
G
A
I
Q
L
N
STAENNLIK
N
G
F
N
A
PTTADEVSAGPN
A
R
V
F
V
L
D
E
ITDV
T
K
D
A
K
A
A
I
A
A
A
GDD
A
L
A
R
T
K
A
L
E
A
F
E
K
K
L
I
A
D
C
E
AEAG
F
R
C
R
L
Y
S
F
SGGN
T
Y
R
L
F
K
N
LEIKDVRLA
Y
A
P
P
G
S
V
G
K
FGGDIDNWMWPRHTGD
F
A
F
Y
R
A
Y
V
G
KDG
K
P
A
A
F
SKDN
V
P
Y
Q
P
K
H
W
L
K
F
A
D
Q
P
L
G
AG
D
F
V
M
V
A
G
Y
P
G
S
TNRYAL
A
A
E
F
D
N
T
A
Q
W
T
Y
P
T
I
A
R
H
Y
K
N
Q
I
A
M
V
E
A
A
G
K
Q
N
A
D
I
Q
V
K
Y
A
A
T
M
A
G
W
N
N
T
S
K
N
Y
D
G
Q
L
E
G
F
K
R
I
D
A
A
G
Q
K
L
R
E
E
A
A
V
L
G
W
L
K
G
Q
GAKG
Q
P
A
L
D
A
H
A
K
L
L
D
L
L
E
Q
S
K
A
T
R
D
R
D
L
T
L
A
L
F
N
N
TA
M
L
G
S
A
T
Q
L
Y
R
L
S
I
E
R
E
K
P
N
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-
Y
V
----
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
-----------------------
A
A
--
V
D
A
W
-
L
G
G
N
D
A
------
A
A
V
K
R
A
L
D
-------
R
L
A
G
T
K
LG----
S
T
-----
E
-----
E
----
R
L
K
W
F
A
AD
R
K
A
F
E
A
S
-----------------
N
D
P
A
I
Q
Y
A
V
A
V
M
P
T
L
L
K
L
E
Q
------
E
R
K
T
R
A
G
E
N
L
A
---
A
R
P
V
Y
L
Q
A
L
---
A
D
Y
K
K
S
-
Q
G
E
F
V
Y
--
P
D
A
N
L
S
L
R
I
T
F
G
N
V
M
G
Y
A
PKDG
M
E
Y
T
PFTT
L
E
G
V
V
A
K
ETGQDPFDSP
K
A
L
L
D
A
V
A
A
KRYGGLEDKRIGSVPV
N
Y
L
S
D
L
D
I
T
GGNSG
S
P
V
L
D
AHGKLV
G
L
A
F
DGNWESVSSNWVFDPKM
T
R
M
I
A
V
D
G
R
Y
L
R
W
I
M
Q
EVYPA
P
Q
L
L
K
E
M
NV
3
PsiBlast_PDB
54.69
32%
-47
- C4 -
-
3WOK
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.36
32%
-27
- C4 -
-
3WOI
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.60
32%
-42
- C4 -
-
3WOJ
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.63
32%
-0
- C4 -
-
3WOO
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.58
32%
-17
- C4 -
-
3WON
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
52.27
32%
-12
- C4 -
-
3WOQ
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
51.76
32%
-21
- C4 -
-
4Y06
3
DAPB2_PSEMX
B:
[423-480]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
AA
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
51.66
32%
-18
- C4 -
-
4Y06
3
DAPB2_PSEMX
A:
[423-480]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
51.44
32%
-7
- C4 -
-
3WOM
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
51.37
32%
-4
- C4 -
-
3WOP
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.34
32%
-1
- C4 -
-
3WOR
1
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.43
32%
-3
- C4 -
-
3WOL
-
DAPB2_PSEMX
A:
[399-456]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
R
E
S
G
Y
Q
E
R
D
-
L
P
A
I
E
G
G
L
K
------------------
Q
L
E
R
R
-----
Y
V
A
A
M
D
R
--------------
Q
L
Q
E
Y
W
L
---
N
E
Y
I
K
L
P
A
D
Q
R
V
A
A
V
D
A
W
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
50.07
20%
30
- C5 -
-
1YAR
-
?
O:
[10-237]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KRAAL
I
Q
N
L
R
D
S
Y
T
E
T
S
S
F
A
V
I
E
E
W
A
A
------------------
G
T
L
Q
E
I
E
G
I
A
K
A
A
A
E
A
H
--------------
G
V
I
R
N
S
T
YGR
A
Q
A
E
K
S
P
--
E
Q
L
--
L
G
V
L
Q
R
Y
Q
D
L
C
H
N
V
Y
C
Q
A
E
T
I
R
T
--
V
I
A
I
-
R
I
P
E
H
K
------
E
------
E
-------
D
N
L
G
V
A
------
V
Q
-----
H
-----
A
----
V
L
K
I
I
----
D
E
L
E
I
K
TLGSGEKSGSGGAPTPI
G
M
Y
A
L
R
E
Y
L
S
A
R
S
T
V
E
D
K
L
L
GGGSQS
P
S
L
L
L
E
L
R
Q
I
D
---
A
D
F
M
L
K
V
E
L
---
A
T
T
H
L
S
T
M
V
R
A
V
I
--
N
A
Y
L
L
N
W
K
K
LIQPRTGSDHMVS------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
46.40
39%
-210
* C6 *
-
2J8P
-
CSTF2_HUMAN
A:
[538-565]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
L
I
M
--------------
Q
V
L
Q
L
T
A
---
D
Q
I
A
M
L
P
P
--
E
Q
--
R
Q
S
I
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
45.41
24%
86
- C3 -
-
5FLG
2
BIOW_BACSU
A:
[5-259]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
T
-
F
Y
S
V
R
M
R
A
S
M
NGSDGGKHI
S
G
G
E
R
L
I
P
F
H
E
M
K
-
H
T
V
N
A
L
L
E
K
G
L
S
HSRGKPD
F
M
Q
I
Q
F
E
E
V
H
E
S
I
---
K
T
I
Q
P
L
P
V
H
T
N
E
--
V
S
C
P
E
E
G
Q
K
L
A
-
R
L
L
L
E
K
E
G
V
S
R
D
V
I
E
K
A
-
Y
E
Q
I
P
E
WSDVR
G
A
V
L
F
D
I
H
T
GKRMDQT
K
E
K
G
V
R
V
S
RMDW
P
D
-----
A
-----
N
----
F
E
K
W
A
----
L
H
S
H
V
P
-----------------
A
H
S
R
I
K
E
A
L
A
L
A
S
K
V
S
R
H
P
A
------
V
V
A
E
L
C
W
S
D
D
P
DYI
T
G
Y
V
A
G
K
K
M
G
Y
Q
R
I
T
A
M
K
-
E
Y
G
T
E
E
G
C
R
V
F
F
I
D
G
S
N
D
V
N
T
Y
I
H
D
L
E
K
Q
P
I
L
I
E
W
E
EDHD--------------------------------------------------------------------------------------------------------------------
31
HHSearch
42.96
21%
-125
- C4 -
-
1OTR
-
CUE2_YEAST
A:
[10-38]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
K
L
S
I
L
M
D
M
F
P
A
I
S
K
S
K
L
------
Q
V
H
L
L
E
N
N
N
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------