@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKU2: (2017-10-29 )
MTIRPILKNLSISLCLSCITTSLFASPAKLSSVKELMQMSQIDYLLKESINELTPYYDQQAEQIISNITGIKTLGPKEKEAAKKLGLLLKDSSNQLISSPKTTQALQDIYLKTYTEEEIQANLKFLKTPEGQSITRKNVQIMGQISEYMMELGQQTFNDPKARDHMQEEMLKIIAPLMKDKEKS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50....-....60........70........80........90........100.......110-.......120.....----..130.....-..140.........150.......160...----..-..-170.......180..----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
I
R
P
I
L
K
N
L
S
I
S
L
C
L
S
C
I
T
T
S
LFASP
A
K
L
S
S
V
K
E
L
M
Q
M
S
Q
I
D
Y
L
L
K
E
S
I
N
E
LT
P
-
Y
Y
D
Q
Q
A
E
Q
I
I
S
N
ITGIKTLG
P
K
E
K
E
A
A
K
KL
G
L
L
L
KDSSNQLISSPK
T
T
Q
A
L
Q
D
I
Y
L
K
-TY
T
E
E
E
I
Q
AN
L
K
F
L
K----TPEGQS
I
T
R
K
-
N
V
Q
--
I
M
G
Q
I
S
E
Y
M
M
E
L
G
Q
QTFNDP
K
A
R
D
H
----
M
Q
-
E
E
-
M
L
K
I
I
A
P
L
M
KDKEKS----------------------------------------------------------------------------------------------------------------
21
Fugue
60.01
11%
-
- C1 -
-
3V6G
-
?
A:
[14-185]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
R
R
Q
A
I
V
E
A
A
E
R
V
I
A
R
Q
G
L
G
G
L
S
H
R
R
V
A
A
E
A
N
V
P
V
G
S
T
T
Y
Y
F
N
D
L
D
A
L
R
E
A
A
L
A
H
A
A
N
-
A
S
A
D
L
L
A
Q
W
R
S
D
L
---
D
K
D
R
D
L
A
A
T
L
A
R
L
T
T
V
Y
L
A
D
Q
D
R
Y
R
T
L
N
E
L
Y
M
A
A
A
H
R
P
E
L
Q
-
R
L
A
R
L
W
P
D
G
L
L
A
L
L
E
----
P
R
I
G
R
R
A
A
N
A
-
V
T
V
--
F
F
D
G
A
T
L
H
A
L
I
T
G
-----
T
P
L
S
T
D
E
----
L
T
-
D
A
-
I
A
R
L
V
A
D
G
-----------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.37
25%
-91
- C1 -
-
2FPP
-
SUCB2_PIG
B:
[117-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.73
25%
-82
- C1 -
-
2FPG
1
SUCB2_PIG
B:
[117-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.52
25%
-86
- C1 -
-
1EUD
-
SUCB2_PIG
B:
[118-216]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.08
25%
-92
- C1 -
-
1EUC
-
SUCB2_PIG
B:
[118-218]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.01
25%
-82
- C1 -
-
4XX0
1
SUCB2_PIG
B:
[117-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.89
25%
-86
- C1 -
-
2FPI
-
SUCB2_PIG
B:
[117-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.61
25%
-77
- C1 -
-
2FP4
-
SUCB2_PIG
B:
[117-217]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
I
L
M
D
R
S
C
N
G
P
V
L
V
G
S
P
Q
G
G
V
D
I
E
E
V
A
-
A
S
N
P
E
L
I
F
K
E
Q
I
D
I
I
E
G
-
I
K
D
S
Q
A
Q
R
M
A
E
N
L
G
---
F
L
G
P
L
Q
N
Q
A
A
D
Q
I
------------------
K
K
L
Y
N
L
F
L
K
I
D
A
T
Q
V
E
V
N
---
P
F
G
E
----
T
P
E
G
Q
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
53.14
18%
-127
- C1 -
-
1QGT
-
?
A:
[1-142]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
D
P
Y
K
E
F
G
A
T
V
E
L
L
S
F
L
P
S
D
F
F
------
P
S
V
R
D
L
L
D
T
A
S
A
L
Y
R
E
A
L
E
-----------
S
P
E
H
C
S
P
H
H
T
A
L
R
Q
A
I
L
C
W
G
E
L
M
T
L
A
T
W
V
G
N
N
L
E
D
------
P
A
S
R
D
L
V
V
N
Y
V
N
-
T
N
M
G
L
K
I
R
Q
L
L
W
F
H
I
----
S
C
L
T
F
G
-----------
R
E
T
V
L
E
Y
L
V
S
F
G
V
W
I
R
T
P
P
A
Y
R
P
P
----
N
----------
A
P
I
L
S
T
--------------------------------------------------------------------------------------------------------------------
23
HHSearch
52.99
14%
-79
- C1 -
-
3OAO
-
?
A:
[2-140]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
A
S
Q
A
E
Q
F
L
K
L
V
H
A
D
K
L
T
V
P
V
Y
A
Q
V
Q
Q
-
M
L
A
Q
R
F
A
--------
Q
A
K
A
P
E
S
K
K
A
V
L
E
R
Y
Q
A
K
A
N
A
E
L
D
R
A
I
G
W
D
K
I
K
P
E
L
I
K
L
Y
T
T
-
N
F
T
E
S
E
L
K
D
L
N
A
F
Y
Q
----
S
P
L
G
K
K
V
L
E
K
-
M
P
R
--
L
T
A
E
S
A
Q
L
T
Q
A
K
L
Q
G
A
V
E
--
P
V
N
-
K
----
L
M
-
A
D
-
M
D
K
E
L
G
V
A
-----------------------------------------------------------------------------------------------------------------------
39
HHSearch
48.65
12%
-191
- C1 -
-
4X86
-
A:
[5-38]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
W
Q
L
I
S
K
V
L
A
R
-
H
F
S
A
A
D
A
S
R
V
L
E
Q
L
Q
----
R
D
Y
E
R
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
47.56
26%
-216
- C1 -
-
1W2L
1
?
A:
[79-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
A
-
S
L
S
E
R
E
V
A
A
L
I
E
F
I
K
----
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
46.86
26%
-23
- C1 -
-
1J7R
-
CAVP_BRALA
A:
[8-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
P
E
E
K
D
E
C
M
K
I
F
D
I
F
D
R
N
A
E
N
I
A
P
V
S
D
T
M
D
M
L
T
K
L
G
-
Q
-
T
Y
T
K
R
E
T
E
A
I
M
K
E
A
R
----
G
P
K
G
D
---
K
K
-
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
45.39
29%
-198
- C1 -
-
4EIE
1
?
A:
[61-81]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
D
-
K
L
S
S
E
E
I
Q
A
V
S
Q
Y
V
L
----
Q
Q
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
44.67
26%
7
- C1 -
-
1J7Q
-
CAVP_BRALA
A:
[6-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
L
G
P
E
E
K
D
E
C
M
K
I
F
D
I
F
D
R
N
A
E
N
I
A
P
V
S
D
T
M
D
M
L
T
K
L
G
-
Q
-
T
Y
T
K
R
E
T
E
A
I
M
K
E
A
R
----
G
P
K
G
D
---
K
K
-
N
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
43.74
25%
-234
- C1 -
-
1E08
1
CY553_DESVH
E:
[58-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
K
-
K
Y
S
D
E
E
L
K
A
L
A
D
Y
M
S
----
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.57
31%
21
- C1 -
-
4RJZ
-
?
A:
[314-405]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
F
F
A
S
K
D
K
D
M
F
K
N
F
G
Q
L
P
A
R
S
D
---
I
P
V
P
P
T
G
N
A
L
K
D
E
A
L
K
-
T
F
V
E
Q
-----
L
K
Y
A
Q
PRGP
S
P
E
W
P
K
I
S
-
K
-
A
I
Q
D
A
I
Q
G
A
L
S
------
G
Q
M
T
---
P
K
A
A
L
D
----
Q
A
-
A
E
-
K
I
K
L
V
--------------------------------------------------------------------------------------------------------------------------
14
Fugue
43.37
26%
58
- C1 -
-
5HX2
-
BP06_BPT4
D:
[5-660]
PVNYQLTRTANAIPEIFVGGT
F
A
E
I
K
Q
N
L
I
E
W
L
N
GQNEFLDYDFE
G
S
R
L
N
V
L
C
D
L
L
A
Y
N
T
L
Y
I
Q
Q
F
G
N
A
A
V
Y
E
SFMRTANL
R
S
S
V
V
Q
A
A
Q
D
N
GYLPTS
K
S
A
A
Q
T
E
I
M
L
TCTDALNRNY
I
T
I
P
RGT
R
F
L
A
YAKDTS
V
N
P
Y
N
F
V
SR
E
D
V
I
A
I
R
D
KNNQYFP
R
L
K
L
A
Q
G
R
I
V
R
T
E
I
I
Y
DKLTPIIIYDKNIDRN
Q
V
K
L
Y
VDGAEWINWTRKSMVHAGSTST
I
Y
Y
M
R
E
TIDG
N
T
E
F
Y
F
G
EGEISANYIGGLKPTQ
N
S
T
I
V
I
E
Y
I
STNGADANGAVGFSYADTLTNITVININENPNDDPDFVGADGGGDPED
I
E
R
I
R
E
L
G
T
I
K
R
E
T
QQRCVT
A
T
D
Y
D
T
F
V
SERFGSIIQAVQ
T
F
T
D
STKPGYA
F
I
A
A
K
P
KSGLYLTT
V
Q
R
E
D
I
K
N
Y
L
K
D
Y
N
L
A
P
I
T
P
S
I
-
I
S
P
N
Y
L
F
I
K
T
N
L
K
V
T
Y
A
-
L
N
K
L
Q
E
S
E
Q
-----
W
L
E
G
Q
I
I
D
K
I
D
R
-
Y
Y
T
E
D
V
E
I
F
N
S
S
F
------------
A
K
S
K
M
L
T
Y
V
D
D
A
D
H
S
V
I
G
S
S
A
T
I
Q
M
V
R
E
V
Q
--------------
N
F
Y
K
----
T
P
E
A
-------
G
I
K
--
Y
N
N
Q
I
K
D
R
S
M
E
S
N
T
F
S
F
N
S
G
R
K
V
V
N
PDTG
L
E
-
E
D
-
V
L
Y
D
V
R
I
V
S
T
D
R
D
S
K
GIGKVII
G
P
F
A
S
GDVTENENIQPYTGNDFNKLANSDGRDK
Y
Y
V
I
G
E
I
N
Y
PA
D
V
I
Y
W
NIAKINLTSEKFEVQT
I
E
L
Y
S
D
P
TDD
V
I
F
T
R
DGSLI
V
F
E
N
DLRPQY
L
T
I
D
LEPISQ
13
Fugue
41.14
13%
88
- C1 -
-
2X3O
1
?
A:
[4-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
A
S
Q
A
E
Q
F
L
K
L
V
H
A
D
K
L
T
V
P
V
Y
A
Q
V
Q
Q
M
L
A
Q
R
F
A
Q
A
---------
K
A
P
E
S
K
K
A
V
L
E
R
Y
Q
A
K
A
N
A
E
L
D
R
A
I
G
W
D
K
I
K
P
E
L
I
K
L
Y
T
T
-
N
F
T
E
S
E
L
K
D
L
N
A
F
Y
Q
----
S
P
L
G
K
K
V
L
E
K
M
P
-------
R
L
T
A
E
S
A
Q
L
T
Q
A
K
L
Q
G
A
V
E
P
V
N
----
K
L
M
A
D
M
D
K
E
----------------------------------------------------------------------------------------------------------------------------
34
HHSearch
39.98
0%
-214
- C1 -
-
4O1W
1
?
C:
[58-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
V
M
-
A
L
S
P
A
D
M
E
N
L
A
A
Y
Y
A
----
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------