@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKU3: (2017-10-29 )
MRYLIIALSCATLLAGCQSSSHLEKNSGELTATLPKVDVDKEPGLLDQYRLGGFTVGGWVNQKLGQTFVPVKPQNEQAAVVYLYRPDTKWNRQEIAAINLFVNGKRIPSLLHNHYYWIELPAGTFRISASRPLLGIHFQEPKYIDITVDAGASYYLKYDEENKKDRSEHTGPFILMQDNIGRREIAFTELKSSSYNFVAEDASGKIRHKPQELKPAKYNEKSDVHLIKPFKLWNPLTW
Atome Classification :
(20 SA)
-----------------------------------------------------------.........------10........20......---------..30.......-----.40----........50........60-...-----------.....70...-.....80...--------------.....90......--..-----100-------------....--...110.......120------........-----130.-------......--------140....------------...150.--...---..-----.160.........170--------.......--------180..--.....190.......200......-.210...-----------...--.220...---....230......--
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------M
R
Y
L
I
I
A
L
S
------
C
A
T
L
L
A
GCQSSSHLEKNS---------G
E
L
T
A
TLPKVD-----VDK----EPG
L
L
D
Q
YRLG
G
F
T
V
G
G
W
V
N
-QKL-----------GQTFVPVKPQ-NEQ
A
A
V
V
Y
L
Y--------------RPDTKWNR
Q
E
I
A
A
--
I
N
-----
L
F
V-------------NG
K
R
--
I
P
S
L
L
HN
H
Y
Y
W
I
ELP-------A
G
T
F
R
I
SA-----SR
P
L
-------
L
G
I
HFQ--------E
P
K
Y
I
D
I
------------
T
VDAG
A
S
--
Y
Y
L
---
K
Y-----DE--ENKKDRSEHTG
P
--------
F
I
L
M
QDN--------IGR
R
E
--
I
A
F
T
ELKSSS
Y
N
F
V
AEDASGKIRH-KPQELKP-----------AKY--NEKSD
V
H
---
L
I
K
P
F
K
LWNPLTW--
23
Fugue
67.44
21%
-1
- C3 -
-
5AHR
1
A:
[1-343]
-----------------------------------------------S
M
T
C
P
FYKKIPG
T
G
F
T
V
D
A
F
Q
YGVVEG
C
T
A
Y
F
L
T
H
F
H
S
D
H
Y
A
G
L
S
KHFT
F
P
V
Y
C
S
E
I
T
G
N
L
L
K
N
K
-----
L
H
V
----
Q
E
Q
Y
I
H
P
L
P
L
D
---
T
E
C
I
V
N
---------------
G
V
K
V
V
L
L
D
A
N
-
H
C
P
G
A
V
M
I
L
F
Y
L
PNG
T
V
I
L
H
TG
D
F
R
A
D
P
S
M
E
R
S
L
L
A
D
Q
K
V
H
-----
M
L
Y
LDTTYCSPE
Y
T
F
P
S
Q
Q
E
--
V
I
R
F
A
I
N
T
A
F
E
A
V
T
L
NPH
A
L
V
V
C
G
T
Y
S
I
G
K
-----
E
K
V
F
-------
L
A
I
A
D
V
L
G
S
K
V
G
M
S
Q
E
K
Y
K
T
L
Q
C
LNIPE
I
N
S
L
I
T
T
D
M
C
S
S
L
V
H
L
L
---
P
M
-----
M
Q
--
I
N
F
K
G
L
Q
S
H
L
K
K
C
GGKYN
Q
I
L
A
F
R
P
T
V
--------
I
P
Q
T
K
GN
I
S
I
Y
G
I
P
Y
S
E
H
S
S
Y
L
E
M
K
R
F
V
Q
W
L
-
K
P
Q
K
I
I
P
-----------
T
V
N
VG
T
W
K
S
R
S
T
---
M
E
K
Y
F
R
E
W
K
L
E
A
G
Y-
25
Fugue
60.91
18%
-30
* C9 *
-
2DYI
-
RIMM_THET8
A:
[1-162]
-----------------------------------------------------------
M
R
L
V
E
I
------------------------------------
G
R
F
G
A
P
-----------
Y
A
----
L
K
G
G
L
R
F
R
G
E
P
V
V
L
H
L
E
R
V
Y
V
E
G
H
-----------
G
W
R
A
I
E
D
L
Y
R
-
V
G
E
E
L
V
V
H
L
A
--------------
G
V
T
D
R
T
L
A
E
A
L
V
G
--
L
R
-----
V
Y
A
-------------
E
V
A
D
--
L
P
P
L
E
E
G
R
Y
Y
Y
F
A
L
I
---------
G
L
P
V
Y
V
-----
E
G
R
Q
-------
V
G
---------------
E
V
V
D
------------
I
L
D
A
G
A
Q
--
D
V
L
---
I
I
-----
R
G
V
G
E
R
L
R
D
R
A
E
R
L
V
P
--------
L
Q
A
----------------------
P
Y
V
R
V
E
E
G
S
I
H
V
D
P
I
P
G
L
F
D
--------------------------------------------------
2
PsiBlast_PDB
57.90
29%
9
- C7 -
-
5CGM
3
?
A:
[486-604]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
D
I
A
R
--
P
N
-----
L
F
V
-------------
N
-----
T
P
D
I
L
H
E
S
L
Q
--
H
G
G
-------
P
G
M
F
A
I
R
A
V
L
A
A
T
M
G
P
A
-------
W
G
V
Y
S
G
--------
Y
E
L
F
E
N
Q
------------
P
V
R
P
G
S
E
--
E
Y
L
NSE
K
Y
E
L
R
P
R
D
F
--
E
S
A
L
A
R
G
E
S
L
E
P
--------
F
L
T
R
L
N
E
--------
I
R
R
L
H
--
P
A
L
R
E
L
R
T
I
R
F
H
H
V
D
N
D
A
-------------------------------------------------------
3
PsiBlast_PDB
55.97
29%
23
- C7 -
-
5CIM
-
?
A:
[486-604]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
D
I
A
R
--
P
N
-----
L
F
V
-------------
N
-----
T
P
D
I
L
H
E
S
L
Q
--
H
G
G
-------
P
G
M
F
A
I
R
A
V
L
A
A
T
M
G
P
A
-------
W
G
V
Y
S
G
--------
Y
E
L
F
E
N
Q
------------
P
V
R
P
G
S
E
--
E
Y
L
NSE
K
Y
ELRPR
D
F
--
E
S
A
L
A
R
G
E
S
L
E
P
--------
F
L
T
R
L
N
E
--------
I
R
R
L
H
--
P
A
L
R
E
L
R
T
I
R
F
H
H
V
D
N
D
A
-------------------------------------------------------
21
Fugue
50.78
13%
-58
* C6 *
-
1LAM
2
?
?:
[1-159]
-----------------------------------------------------------
T
K
G
L
V
L
G
I
Y
----------------
S
K
E
K
E
E
D
E
---------
P
Q
F
T
S
A
G
E
N
F
N
-----
K
L
V
----
S
G
K
L
R
E
I
L
N
I
S
G
P
P
L
----
K
-
A
G
K
-----------
T
R
T
F
Y
G
L
H
E
D
-
F
P
S
V
V
V
V
G
L
G
--------------
K
K
T
A
G
I
D
E
Q
E
N
--------------------------------------------
W
H
E
G
-------
K
E
N
I
R
A
A
V
-----
A
A
G
C
-------
R
Q
I
Q
D
L
--------
E
I
P
S
V
E
V
---------------------------------------------------------------
D
P
--------
C
G
D
A
Q
--
A
A
A
E
G
A
V
L
G
L
Y
E
Y
D
D
L
K
Q
K
R
K
V
V
V
-
S
A
K
L
H
G
S
-----------
E
D
Q
--
E
A
W
Q
R
G
V
---
L
--------------
9
PsiBlast_PDB
50.02
26%
-94
- C7 -
-
3T01
-
?
A:
[7-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
I
S
-----
V
T
V
-------------
N
G
R
R
--
Y
P
--------
W
P
R
V
P
-------
A
I
A
V
C
L
D
G
-----
C
------------------------
E
P
A
Y
L
D
A
------------
A
I
D
A
G
L
M
--
P
A
L
---
K
R
-----
I
K
--
E
R
G
A
V
R
L
A
H
S
---------------------------------------------------------------------------------------------------------
27
Fugue
49.73
18%
69
- C8 -
-
4LDV
5
ARFA_ARATH
A:
[16-356]
S
D
A
L
C
R
E
L
W
H
A
C
A
GPL
V
T
L
P
R
EG
E
R
V
Y
Y
F
P
E
G
H
M
E
Q
L
E
ASMHQGLEQ
Q
M
P
S
F
NLPS
K
I
L
C
K
V
I
N
I
Q
R
R
------
A
E
T
D
E
V
Y
A
Q
I
T
L
L
P
E
L
D
Q
---------
S
E
P
T
S
P
D
A
P
V
Q
ET
V
H
S
F
C
K
----
T
L
T
A
S
D
T
S
T
H
G
G
F
S
V
L
R
R
H
A
-
D
D
C
LPPLDMSQQP
P
W
Q
E
L
V
A
T
D
L
H
-
N
S
E
W
H
F
R
H
I
F
--------------
R
G
Q
P
R
--
R
H
L
L
T
T
G-
W
S
-----
V
F
V
-------------
S
S
K
K
--
L
V
A
--
G
D
A
F
I
F
L
R
G
E
-------
N
E
E
L
R
V
G
V
-----
R
R
H
M
PSSVIS
S
H
S
M
H
I
G
--------
V
L
A
T
A
A
H
------------
A
I
T
T
G
T
I
--
F
S
V
---
F
Y
---------
K
P
R
T
S
R
S
E
------------
F
I
V
S
V
N
R
--------
Y
L
E
A
K
--
T
Q
K
L
S
V
-
G
M
R
F
K
M
R
F
K
R
F
S
G
T
I
V
G
-
V
Q
E
N
K
S
S
VWHDSEWRS
L
K
V
Q
W
--
D
E
P
S
S
V
F
RPE
R
V
S
P
W
E
L
-
E
P
L
N
---
7
PsiBlast_PDB
49.57
26%
-92
- C7 -
-
3SZZ
-
?
A:
[7-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
I
S
-----
V
T
V
-------------
N
G
R
R
--
Y
P
--------
W
P
R
V
P
-------
A
I
A
V
C
L
D
G
-----
C
------------------------
E
P
A
Y
L
D
A
------------
A
I
D
A
G
L
M
--
P
A
L
---
K
R
-----
I
K
--
E
R
G
A
V
R
L
A
H
S
---------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
49.28
26%
-91
- C7 -
-
3SZY
-
?
A:
[7-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
I
S
-----
V
T
V
-------------
N
G
R
R
--
Y
P
--------
W
P
R
V
P
-------
A
I
A
V
C
L
D
G
-----
C
------------------------
E
P
A
Y
L
D
A
------------
A
I
D
A
G
L
M
--
P
A
L
---
K
R
-----
I
K
--
E
R
G
A
V
R
L
A
H
S
---------------------------------------------------------------------------------------------------------
30
Fugue
48.16
12%
6
* C4 *
-
1UAL
1
TRMD_HAEIN
A:
[19-270]
---------------------------------------------------------SH
M
W
I
G
V
I
S
L
F
-------
P
E
M
F
K
A
I
T
E
F
G
V
T
G
R
A
V
---------
K
H
N
L
L
K
V
E
C
W
N
-----
P
R
D
FTFD
K
H
K
T
V
D
D
R
P
Y
G
G
G
P
G
M
L
M
M
V
-
Q
P
L
-----------
R
D
A
I
H
T
A
K
A
A
A
G
E
G
A
K
V
I
Y
L
S
--------------
P
Q
G
R
K
L
D
Q
G
G
V
T
E
--
L
A
Q
NQ
K
L
I
L
V
-------------
C
G
R
Y
EG
I
D
E
R
L
I
Q
T
E
I
D
E
E
W
S
-------
I
G
D
Y
V
L
T
G
-----
G
E
L
P
-------
A
M
T
L
I
D
--------
A
V
A
R
F
I
P
------------
G
V
L
S
F
A
D
--
G
L
L
---
D
C
-----
P
H
--
Y
T
R
P
E
V
L
------------------
E
G
--------
L
T
V
P
P
--
V
L
M
S
G
H
H
E
E
I
R
K
W
R
L
K
Q
S
L
Q
R
T
W
L
-
R
R
P
E
L
L
E
-----------
G
L
A
--
L
T
D
E
Q
R
K
---
L
L
K
E
A
Q
A
E
H
N
S
L
E
HH
8
PsiBlast_PDB
47.91
26%
-86
- C7 -
-
3T00
-
?
A:
[7-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
I
S
-----
V
T
V
-------------
N
G
R
R
--
Y
P
--------
W
P
R
V
P
-------
A
I
A
V
C
L
D
G
-----
C
------------------------
E
P
A
Y
L
D
A
------------
A
I
D
A
G
L
M
--
P
A
L
---
K
R
-----
I
K
--
E
R
G
A
V
R
L
A
H
S
---------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
47.55
26%
-79
- C7 -
-
3T02
1
?
A:
[7-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
K
--
I
S
-----
V
T
V
-------------
N
G
R
R
--
Y
P
--------
W
P
R
V
P
-------
A
I
A
V
C
L
D
G
-----
C
------------------------
E
P
A
Y
L
D
A
------------
A
I
D
A
G
L
M
--
P
A
L
---
K
R
-----
I
K
--
E
R
G
A
V
R
L
A
H
S
---------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
45.88
28%
-33
- C6 -
-
4ZW6
3
AMP1_PLAFQ
A:
[795-855]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
19
PsiBlast_PDB
44.40
28%
-33
- C6 -
-
4ZW5
1
AMP1_PLAFQ
A:
[795-855]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
22
Fugue
44.14
22%
67
- C5 -
-
2HEQ
-
YORP_BACSU
A:
[1-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
-----
G
D
--
P
L
P
K
Y
W
S
Y
P
V
G
L
--------
A
V
E
I
N
N
N
ARYGCPHH
V
G
R
K
G
--
K
I
I
E
H
L
H
S
A
T
Y
D
Y
A
V
S
D
E
T
G
D
I
T
Y
F
K
E
H
E
L
T
P
-----------
L
K
G
--
G
L
A
Y
V
L
E
---
H
H
H
H
H
H
---------
15
PsiBlast_PDB
44.08
28%
-34
- C6 -
-
3EBH
2
AMP1_PLAFQ
A:
[794-854]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
16
PsiBlast_PDB
44.00
28%
-27
- C6 -
-
4X2U
2
AMP1_PLAFQ
A:
[794-854]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
17
PsiBlast_PDB
43.84
28%
-27
- C6 -
-
3EBI
2
AMP1_PLAFQ
A:
[795-855]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
18
PsiBlast_PDB
43.67
28%
-33
- C6 -
-
4ZW3
-
AMP1_PLAFQ
A:
[795-855]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----
14
PsiBlast_PDB
43.63
28%
-30
- C6 -
-
3EBG
2
AMP1_PLAFQ
A:
[794-854]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
K
N
P
N
D
I
R
A
V
Y
L
P
--------
F
---
T
N
N
--------
L
R
R
------
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
-----------
K
T
-----------
D
K
F
--
N
P
M
V
A
T
Q
---
L
C
E
P
F
K
L
W
N
K
L
----