@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKX8: (2017-10-30 )
MSKYFELLDWVTAEKFCELTGEQVSNLKNLRPQWDEGKVWVKVSDRKILYSLKGYNAWVEQAAQVYQKAQEQDREKYRLTLNGTTSASGSPSTSSIPQPTSLKRLRLEKIL
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--.....-...20.--------.......--30-.---...--..-----..40.--...---.-------.------..-50......--..60.........70........80.--..----------------...-..90........100.......110-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
K
Y
F
E
L
L
D
W
V
--
T
A
E
K
F
-
C
E
L
T
G
E
--------
Q
V
S
N
L
K
N--LR-P---QWD--E
G
-----
K
V
W
V
K
--VSD---
R
-------
K
------
I
L
-
Y
SLKG
Y
N
A
--
W
V
E
-
Q
A
A
Q
V
Y
Q
K
A
Q
E
QDR
E
K
Y
R
L
T
LN--GT----------------TSA-SGSPSTSSIPQPT
S
L
K
R
L
R
L
E
KIL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
74.37
17%
-71
- C4 -
-
2KVV
-
?
A:
[1-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
Q
I
I
F
N
E
E
W
M
--
V
E
K
A
L
-
M
V
R
T
G
L
--------
G
A
R
Q
I
E
S
--
Y
R
Q
G
---
A
W
I
--
E
G
-----
V
H
F
K
R
--
V
S
P
---
S
GEKTLR
G
T
------
T
W
-
Y
N
Y
P
E
I
N
K
--
F
I
R
-
D
S
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
67.43
14%
-47
- C4 -
-
2KVV
-
?
A:
[1-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
Q
I
I
F
N
E
E
W
M
--
V
E
K
A
L
-
M
V
R
T
G
L
--------
G
A
R
Q
I
E
S
Y
-
R
Q
-
G
---
A
W
I
--
E
G
-----
V
H
F
K
R
V
-
S
P
S
---
G
-------
E
KTLR
G
T
T
W
-
Y
N
Y
P
E
I
N
K
--
F
I
R
-
D
S
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
66.87
21%
43
- C4 -
-
4KTW
2
?
A:
[1-160]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
I
L
-
A
I
N
F
S
--
T
A
S
K
K
-
G
E
G
T
G
Y
A
F
R
K
DG
Q
V
Y
V
G
S
I
K
A
--
Y
N
-
P
KKT
A
W
E
--
R
T
-----
F
D
I
V
N
--
A
I
K
---
D
-------
I
------
I
D
E
F
D
L
K
G
Y
H
L
--
A
I
E
-
T
P
I
M
G
R
N
R
K
H
S
I
T
L
A
N
C
N
G
Y
F
I
--
G
A
I
DGLVN
G
Y
T
F
I
D
N
S
K
W
C
S
Y
-
H
L
I
S
G
K
R
E
Q
R
K
E
E
S
L
E
L
L
K
A
T
G
L
V
DSNCKD
D
N
I
A
D
A
Y
N
I
L
T
Y
C
E
H
L----------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
61.13
11%
-80
- C4 -
-
4LHF
-
VCOX_BPP2
A:
[7-87]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
D
A
I
--
P
Y
Q
E
F
-
A
K
L
I
G
K
--------
S
T
G
A
V
R
R
--
M
I
-
D
---
K
G
K
--
L
P
-----
V
I
D
M
T
--
D
P
Q
---
S
-------
A
------------
S
A
G
E
Y
--
W
V
Y
---
L
P
A
W
N
N
G
L
K
L
A
Y
E
S
----------------------------------------
R
P
K
E
I
R
D
G
W
L
M
W
L
G
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
60.78
12%
44
- C4 -
-
4LHF
-
VCOX_BPP2
A:
[7-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
T
D
A
I
--
P
Y
Q
E
F
-
A
K
L
I
G
K
--------
S
T
G
A
V
R
R
M
I
D
K
-
G
---
K
L
P
V
I
D
M
-----
T
D
P
Q
S
AS--
A
---
G
-------
E
------
Y
W
-
V
Y
L
P
A
W
N
N
--
G
L
K
-
L
A
Y
--
E
S
R
P
K
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
59.64
16%
-
- C4 -
-
4NLE
-
?
A:
[4-471]
TIPNVLANRYAS
D
E
M
V
A
I
W
S
P
E
A
K
I
I
A
E
R
R
L
W
L
A
V
L
R
A
Q
A
E
L
GVAVPDG
V
V
E
D
Y
E
R
V
L
ENVD
L
E
S
I
A
A
R
E
R
VRH
D
V
K
A
R
IEEFNAHEHVHKGMT
S
R
D
L
T
E
N
V
E
Q
L
Q
I
R
Q
S
L
E
L
V
F
S
H
G
V
A
V
V
A
R
L
A
E
R
A
V
V
Y
R
DL
V
M
A
G
R
S
HNVA
A
Q
A
T
T
L
G
K
R
F
A
S
A
A
E
E
T
L
V
A
L
T
R
L
R
E
L
I
D
R
YPLRGVKGP
M
G
T
A
Q
D
M
L
D
L
F
GG
D
V
G
K
L
-
A
D
L
E
R
R
--------
V
A
E
F
L
G
F
--
T
E
-
V
---
F
T
S
--
V
G
-----
Q
V
Y
P
R
--
S
L
D
---
H
-------
D
------
V
L
-
S
A
L
V
Q
F
G
A
--
G
P
S
-
S
M
A
H
T
I
R
L
M
A
G
H
E
L
-----------
V
----------------
T
E
G
-
F
A
P
G
Q
V
G
S
S
A
M
P
H
K
M
N
T
R
S
C
E
R
V
N
G
L
Q
V
V
L
R
G
Y
A
S
M
A
A
E
L
AGAQWNEGDVFC
S
V
V
R
R
V
A
L
P
D
A
F
F
A
I
D
G
Q
T
E
T
F
L
T
V
L
D
E
F
G
A
Y
P
A
V
I
Q
R
E
L
D
R
Y
LPFLA
T
T
R
I
L
M
A
A
V
R
A
GVG
R
E
A
A
H
E
V
I
K
E
H
A
V
A
V
A
L
A
M
R
E
QGREPD
L
I
D
R
L
A
G
DPRLPLD
K
V
A
L
E
A
A
L
ED
K
Q
A
F
T
GA
A
G
D
Q
V
D
G
V
V
A
A
V
G
E
L
V
S
R
Y
PEAAKYTSG
51
HHSearch
58.97
11%
-24
- C4 -
-
4J2N
-
?
C:
[2-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
P
P
R
A
--
S
I
Q
Q
T
-
A
D
Y
L
G
V
--------
S
T
K
T
V
R
N
YI
A
A
-
G
---
K
L
-----------
K
A
V
R
--
L
G
P
---
R
-------
L
------
I
R
-
V
E
R
D
S
V
E
A
--
L
M
R
-
P
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
58.71
11%
-27
- C4 -
-
4J2N
-
?
A:
[3-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
P
R
A
--
S
I
Q
Q
T
-
A
D
Y
L
G
V
--------
S
T
K
T
V
R
N
Y
I
A
A
-
G
---
K
L
-----------
K
A
V
R
--
L
G
P
---
R
-------
L
------
I
R
-
V
E
R
D
S
V
E
A
--
L
M
R
-
P
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
58.37
13%
-47
- C4 -
-
1J9I
-
TERS_LAMBD
B:
[1-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
V
--
N
K
K
Q
L
-
A
D
I
F
G
A
--------
S
I
R
T
I
Q
N
WQ
E
Q
-
G
---
M
-----------
P
V
L
R
G
--
G
G
K
---
G
N------
E
------
V
L
-
Y
D
S
A
A
V
I
K
--
W
Y
A
-
E
R
D
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
HHSearch
56.17
10%
-15
- C4 -
-
4R4E
1
GLNR_BACSU
A:
[7-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
M
P
L
F
--
P
I
G
I
V
-
M
Q
L
T
E
L
--------
S
A
R
Q
I
R
Y
Y
E
E
N
-
G
---
L
I
F
---
P
--------
A
R
--
T
E
G
---
N
-------
R
------
R
L
-
F
S
F
H
D
V
D
K
--
L
L
E
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
HHSearch
55.14
20%
-13
- C4 -
-
3QAO
3
?
A:
[2-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
M
--
Q
I
K
E
L
-
A
E
L
T
G
V
--------
S
V
R
T
L
H
H
Y
D
K
I
-
G
---
L
L
V
--
P
Q
--------
K
D
--
D
W
N
---
G
-------
Y
------
R
I
-
Y
S
E
K
D
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
53.99
35%
88
- C7 -
-
5I7H
2
CYSM_MYCTU
B:
[21-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
R
--
L
S
-
P
---
R
W
D
--
D
G
D
G
P
H
V
R
L
W
A
K
--
L
E
D
---
R
-------
N
------
P
T
-
G
S
I
K
D
R
P
A
V
R
M
I
E
-
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.74
24%
25
- C3 -
-
2DI7
-
KDEL1_HUMAN
A:
[39-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Q
A
V
D
-
T
--
S
G
N
K
F
-
T
S
S
P
G
E
--------
K
V
F
Q
V
K
V
--
S
A
-
P
---
E
E
Q
--
F
T
-----
R
V
G
V
Q
--
V
L
D
---
R
-------
K
DG
S
---
F
I
-
V
R
Y
R
M
Y
A
S
--
Y
K
N
-
L
K
V
E
I
K
F
Q
G
Q
H
V
A
K
S
P
Y
I
L
K
G
S
--
G
P
----------------
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64
HHSearch
53.46
14%
18
* C4 *
-
2ZHG
1
SOXR_ECOLI
A:
[10-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
L
--
T
P
G
E
V
-
A
K
R
S
G
V
--------
A
V
S
A
L
H
F
Y
E
S
K
-
G
---
L
I
T
--
S
------
I
---
R
--
N
S
G
---
N
-------
Q
------
R
R
-
Y
K
R
D
V
L
R
Y
--
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
HHSearch
53.22
13%
27
- C4 -
-
1G4D
2
REPC_BPMU
A:
[1-54]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
I
W
C
--
S
P
Q
E
I
-
M
A
A
D
G
M
PG------
S
V
A
G
V
H
Y
R
A
N
V
-
Q
---
G
W
T
--
K
---------
R
K
--
K
E
G
VKG
G
K------
A
------
V
E
-
Y
D
V
M
S
M
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
52.12
9%
-17
- C4 -
-
1Y6U
-
?
A:
[8-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
E
R
Y
T
L
--
T
I
E
E
A
-
S
K
Y
F
R
I
--------
G
E
N
K
L
R
R
L
A
E
E
-
N
---
K
----
N
A
-----
N
W
L
I
M
--
N
-
G
---
N
-------
R
------
I
Q
-
I
K
R
K
Q
F
E
K
--
I
I
D
-
T
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
HHSearch
51.57
14%
22
- C4 -
-
4R24
1
TNRA_BACMW
B:
[3-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
D
K
K
V
M
--
S
I
G
I
V
-
K
E
L
T
G
L
--------
S
E
R
Q
I
R
Y
YE
K
R
-
S
---
L
L
F
--
P
---------
D
R
--
T
N
T
---
G
-------
I
------
R
K
-
Y
S
F
S
D
V
E
R
--
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
50.41
18%
6
- C4 -
-
2Z0R
-
?
A:
[5-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
G
T
W
Y
V
L
E
G
D
--
P
G
E
H
L
V
V
E
A
L
G
E
--------
R
L
S
G
-------------------------
I
W
-----
T
S
---
R
-------
E
------
L
A
-
E
A
F
L
A
H
H
P
--
H
L
G
M
R
---
V
S
A
L
E
S
R
A
L
K
E
A
Y
L
R
A
L
G
M
L
Q
V
----------------
E
A
V
M
V
D
Y
R
P
G
T
H
R
A
Q
V
A
R
V
K
D
L
L
E
E
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
HHSearch
49.00
10%
-55
- C4 -
-
3HH0
-
?
A:
[1-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
W
--
L
I
S
E
F
-
A
S
V
G
D
V
--------
T
V
R
A
L
R
Y
Y
D
K
I
-
N
---
L
L
K
--
P
S
--------
D
Y
--
T
E
G
---
G
-------
H
------
R
L
-
Y
T
K
D
D
L
Y
V
--
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.98
23%
-1
* C6 *
-
2QF7
1
?
A:
[467-513]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
D
-
T
T
P
E
L
F
Q
Q
V
K
R
Q
D
R
A
T
K
L
L
T
Y
L
--
A
D
----------------
V
T
V
-
N
G
H
P
E
A
K
D
R
P
K
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------