@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKY2: (2017-10-30 )
MINLVLVINGIQVGTLEDGTYIPTFKASLNRIVNPEKLDIKKVELSPEGKFDYFLNPNTTGKYMASLGDSFDDFDIFFYEYESNFVEFIWRLHNQTVFSYLDLRSDITYSGKVPKYYLLKIIKEFLEWVDAVD
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--......--------...20----........30...--..-...40........50------------.------------.....-----------..60--.....-...---------70.-.......80........90........100---------------...---....110......--.120.......130.-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
N
L
V
L
V
IN
G
---
I
Q
V
GTL--------EDG
T
Y
----I
P
T
F
K
A
S
L
N
RIVN--PE-KL
D
I
K
K
V
E
LSPEG
K
F
------------
D
------------
Y
F
LNP-----------NTT
G
--
K
Y
M
A
S
-LGD---------SFD-DF
D
I
F
F
Y
EYES
N
F
V
E
F
I
W
R
L
H
N
Q
T
V
F
S
Y
L
D
---------------LRS---DITYSGKV
P
K
Y
Y
L
--
L
K
I
I
K
E
F
L
E
W
V
DAVD-------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
74.83
18%
-
- C3 -
-
4DDP
-
BECN1_HUMAN
A:
[248-447]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KS
V
E
N
Q
M
R
Y
A
Q
T
Q
L
D
K
LVFN
A
T
F
H
I
W
H
S
G
Q
F
G
T
I
N
N
---
F
R
L
G
R
L
PSVPVE
W
N
E
I
N
A
A
----
W
G
Q
T
V
L
L
L
H
A
L
A
N
--
K
M
-
G
L
K
F
Q
R
Y
R
L
V
P
Y
G
N
H
------------
S
------------
Y
L
E
S
L
-----------
T
D
K
S
--
K
E
L
P
L
-
Y
C
S
G
G
L
RFFWDN
K
F
D
-
H
A
M
V
A
F
L
D
C
V
Q
Q
F
K
E
E
V
E
K
G
T
R
F
C
L
P
Y
R
M
D
VEKGKIEDTGGSG
G
S
Y
S
I
---
K
T
Q
F
N
S
E
E
Q
W
T
K
A
--
L
K
F
M
L
T
N
L
K
W
G
L
A
W
V
S
S
Q
F---------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.01
26%
0
- C4 -
-
1F9A
1
NADM_METJA
A:
[7-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
F
----
Q
P
F
H
K
G
H
L
E
V
I
K
K
I
-
A
E
-
E
V
D
E
I
I
I
G
I
G
S
A
Q
K
S
------------
H
------------
T
L
E
N
P
-----------
F
T
A
G
--
E
R
I
L
M
-
I
T
Q
---------
S
L
K
-
D
Y
D
L
T
Y
Y
P
I
P
I
K
D
I
E
F
-----
N
S
I
W
V
S
Y
V
E
---------------
S
L
T
PPF
D
I
V
Y
S
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
53.58
22%
-
- C3 -
-
4C0E
-
?
A:
[1674-2193]
L
E
A
A
H
L
L
E
Q
M
E
Y
V
F
D
E
W
I
H
L
C
N
NPHAT
E
R
A
A
M
I
F
V
H
Q
L
H
S
V
QLVTN
R
D
E
F
L
L
F
L
R
H
A
L
D
K
S
V
E
R
F
E
Q
G
I
H
S
GAS
I
A
E
S
F
Q
A
V
E
A
L
V
K
L
I
I
I
F
V
K
SHS
A
A
V
A
F
M
D
S
I
L
A
L
G
V
L
V
A
N
S
H
H
V
K
RGENFN
Q
R
V
F
Y
R
F
F
A
L
L
L
H
E
V
G
L
L
A
GHFS
K
S
H
Y
E
Q
I
I
L
N
F
A
A
R
L
F
D
M
RPNLLPGF
A
C
A
W
A
G
L
V
S
HRAF
L
P
V
I
L
G
LPDEKG
W
A
P
F
T
K
L
L
E
Q
F
L
G
C
V
G
E
L
V
K
T
FTVS
S
L
G
K
E
M
Y
H
A
A
L
K
I
L
I
V
L
Q
H
DF
P
I
Y
L
D
K
F
R
V
Q
L
C
Q
S
L
PLHA
T
Q
L
V
N
L
I
L
A
A
I
P
---
P
N
C
N
S
L
--------
A
D
---------
P
F
Q
A
G
L
K
V
D
K
I
--
P
D
M
K
E
-------
R
P
P
T
A
F
------------
D
------------
S
A
G
L
L
-----------
R
E
A
G
L
L
D
I
L
E
R
M
L
Q
N
---------
G
P
S
----------
E
D
G
V
A
Q
I
N
H
A
I
N
K
S
T
S
F
G
Y
V
P
---------------
L
-----------
G
V
N
R
R
L
I
--
D
A
V
V
A
R
F
A
E
F
A
I
N
R
A
S
S
RSDSAIFVAGA
N
D
I
K
T
L
Q
M
L
V
T
E
VS
P
E
A
R
Y
Y
L
V
S
S
M
V
N
E
LRYPN
A
Y
T
N
Y
F
S
Q
A
L
L
D
I
F
G
HDMSD
P
E
E
N
L
V
R
E
Q
I
V
R
V
L
L
E
R
V
LGYWPQP
W
G
L
I
I
T
I
L
E
L
L
K
NDKYLFFEL
P
F
I
K
A
T
P
E
V
A
E
R
F
T
A
L
A
R
S
AA
32
Fugue
50.77
19%
-43
* C3 *
-
2DHQ
-
AROQ_MYCTU
A:
[3-143]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
V
N
V
I
N
G
---
P
N
L
G
R
L
GR------
R
G
G
T
T
----
H
D
E
L
V
A
L
I
E
R
E
A
A
--
E
L
-
G
L
K
A
V
V
R
Q
S
D
S
E
A
Q
L
L
D
W
I
H
Q
A
A
D
A
A
E
P
------------
V
I
L
N
A
-----------
G
G
L
T
--
H
T
S
V
A
-
L
R
D
---------
A
C
A
-
E
L
S
A
P
L
I
E
V
H
I
S
N
V
H
A
R
E
E
F
R
R
H
S
Y
L
S
P
I
----------------
A
T
G
---
V
I
V
G
L
G
I
Q
G
Y
L
L
A
--
L
R
Y
L
A
E
H
---------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
49.81
17%
-69
- C3 -
-
2DHQ
-
AROQ_MYCTU
A:
[3-143]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
V
N
V
I
N
G
P
NL
G
R
L
G
R
R
-------------GGTT
H
D
E
L
V
A
L
I
E
R
E
A
A
--
E
L
-
G
L
K
A
V
V
R
Q
S
D
S
E
A
Q
L
------------
L
D
W
I
H
Q
A
A
D
A
A
E
P
V
I
L
N
A
-----------
G
G
L
T
--
H
T
S
V
A
-
L
R
D
---------
A
C
A
-
E
L
S
A
P
L
I
E
V
H
I
S
N
V
H
A
R
E
E
F
R
R
H
S
Y
L
S
P
I
----------------
A
T
G
---
V
I
V
G
L
G
I
Q
G
Y
L
L
A
--
L
R
Y
L
A
E
H
---------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.26
26%
-63
- C4 -
-
4GTF
-
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.90
26%
-74
- C4 -
-
4KAS
1
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
46.39
26%
-56
- C4 -
-
3G4C
3
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.24
30%
-96
- C4 -
-
2CG2
-
?
A:
[586-647]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
G
---
V
Q
--
S
E
--------
D
A
G
Q
T
----
V
S
I
D
R
A
D
L
N
R
L
L
L
--
K
E
----
V
S
A
V
R
L
V
F
E
G
K
L
------------
K
------------
S
S
G
N
P
-----------
L
L
L
G
--
Q
L
F
G
M
-
L
G
--------------
D
F
D
F
W
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
46.22
26%
-72
- C4 -
-
4KAR
2
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
46.09
26%
-59
- C4 -
-
1O29
3
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
45.96
26%
-61
- C4 -
-
1O25
1
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
45.75
15%
-19
- C4 -
-
5FFP
-
?
A:
[26-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
C
L
G
Y
F
M
G
G
---
K
L
V
W
S
----------
S
N
S
T
----
L
G
V
D
L
S
M
L
S
R
L
H
C
M
R
N
T
-
V
E
D
A
E
L
F
H
I
S
P
-
E
D
A
------------
Y
------------
R
E
L
C
N
R
A
F
PSMDSGA
E
S
N
D
F
--
T
H
L
V
S
-
A
E
S
---------
L
S
D
E
G
Y
Y
I
F
L
V
E
Y
D
-
E
S
A
K
L
I
Y
G
F
K
--------
E
---------------
N
-
S
---
R
E
A
G
E
V
V
L
V
R
G
E
F
--
Q
S
V
V
R
D
V
L
A
K
S
-----------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
45.75
26%
-72
- C4 -
-
1O28
4
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
45.54
26%
-69
- C4 -
-
3G4A
3
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
45.37
26%
-64
- C4 -
-
1O2A
2
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.29
30%
-78
- C4 -
-
2CFZ
-
?
A:
[586-647]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
G
---
V
Q
--
S
E
--------
D
A
G
Q
T
----
V
S
I
D
R
A
D
L
N
R
L
L
L
--
K
E
----
V
S
A
V
R
L
V
F
E
G
K
L
------------
K
------------
S
S
G
N
P
-----------
L
L
L
G
--
Q
L
F
G
M
-
L
G
--------------
D
F
D
F
W
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.13
26%
-53
- C4 -
-
1O24
-
THYX_THEMA
A:
[155-200]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
45.10
26%
-67
- C4 -
-
5IOS
3
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
44.97
26%
-62
- C4 -
-
1O26
4
THYX_THEMA
A:
[167-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
R
F
F
W
T
V
N
A
R
S
L
M
N
F
L
N
---------------
L
R
A
---
D
S
H
A
Q
W
E
I
Q
Q
Y
A
L
A
I
A
R
I
F
K
E
K
C
P
W
------------------------------------------------------------------------------------------------------------------------------------------