@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKY4: (2017-10-30 )
MGLTVTEITVSSACKCLGVSTSGYYAWRKRQIYVNQKYTDLKAVYWQHYARLGAPSLVHDMHDLGYCMSERTVGRMLKKISLRSKIARK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10.......---.20........30.-----------------..--------------.....---40.......--.50...---...--..60..-.-----..-----...---------------70....-------....80........---------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG
L
T
V
T
E
I
T
-
V
S
SA
C
K
C
LG---VSTS
G
Y
Y
A
W
R
K
R
Q
I
-----------------
Y
V
--------------NQKY
T
---
D
L
K
A
V
Y
W
Q
H
--
Y
A
RLG
A
---
P
S
L
--
V
H
D
M
H
D
-
L
-----
G
Y
-----
C
M
S
---------------
E
R
T
V
G
R
-------
M
L
K
K
I
S
L
R
S
K
IARK---------------------
24
HHSearch
69.41
29%
-174
- C4 -
-
5UNK
-
?
A:
[12-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
V
R
K
V
Q
I
---
N
P
R
T
T
A
---
K
D
L
--
V
K
M
L
E
E
-
T
-----
G
T
-----
K
V
S
---------------
I
S
T
V
K
R
-------
V
L
Y
R
H
N
L
K
G
R
S
A
R
----------------------
32
Fugue
65.68
18%
-25
- C3 -
-
4FS7
2
?
A:
[2-394]
YDFVIDE
I
T
Y
N
F
T
KEHGTVEVSGLREFLNP
L
V
V
N
I
P
P
V
V
T
Y
KD
N
K
Y
D
VV
S
I
G
YAAFQGCRKVT
E
I
K
I
P
STVREIGEFAFENCSKLE
I
I
N
I
P
DSVKMIGRCTFSGCYALK
S
I
L
L
PLMLKSIGVEAFKGCDFK
E
I
T
I
P
EGVTVIGDEAFATCESLE
Y
V
S
L
PDSMETLHNGLFSGCGKLK
S
I
K
L
PRNLKIIRDYCFAECILLE
N
M
E
F
P
NSLY
Y
L
G
DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK
L
R
I
G
G
SLFYNCSGLK
K
V
I
Y
G
S
VIVPEKTFY
G
C
S
S
L
T
E
V
K
-
L
L
D
S
V
K
F
I
G
------
E
E
A
F
E
S
C
T
S
L
V
-----------------
S
I
--------------
D
L
P
Y
L
--------------
V
E
E
I
G
K
---
R
S
F
RG
C
T
S
L
S
N
-
I
-----
N
F
-----
P
L
S
---------------
L
R
K
I
G
A
NAFQGCI
N
L
K
K
V
E
L
P
K
R
L
E
Q
Y
RYDFEDT
T
K
F
K
W
I
K-------
6
HHSearch
56.04
10%
-36
- C4 -
-
6PAX
-
PAX6_HUMAN
A:
[30-131]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
S
G
A
R
-
P
C
D
I
S
R
I
L
Q
---
V
S
N
G
C
V
S
K
I
L
G
R
Y
Y
A
TGSIRPRA
I
G
G
S
K
PRV
A
T
--------------
P
E
V
V
S
---
K
I
A
Q
Y
K
Q
E
---
C
P
S
I
F
A
---
W
E
I
--
R
D
R
L
L
S
-
E
GVCTN
D
N
-----
I
P
S
---------------
V
S
S
I
N
R
-------
V
L
R
N
L
A
S
E
K
--------------------------
34
Fugue
55.99
20%
1
- C4 -
-
2HIN
-
?
A:
[1-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
P
E
E
L
V
R
H
F
G
D
-
V
E
K
A
A
V
G
V
G
---
V
T
P
G
A
V
Y
Q
W
L
Q
A
G
E
-----------------
I
P
--------------
P
L
R
Q
S
---
D
I
E
V
R
T
A
Y
K
--
L
K
----------------------------------
S
---------------
D
F
T
S
Q
R
-------
M
G
K
E
G
H
-----------------------------
31
Fugue
55.82
24%
22
* C4 *
-
1UMQ
-
A:
[22-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
K
G
E
S
L
P
-----------------
P
P
--------------
P
E
N
P
M
---
S
A
D
R
V
R
W
E
H
--
I
Q
R
I
Y
E
M
C
D
R
N
V
--
S
E
T
A
R
R
-
L
-----
N
-------
M
H
---------------
R
R
T
L
Q
R
-------
I
L
A
K
R
S
P
R
---------------------------
14
HHSearch
54.74
23%
-207
- C4 -
-
5I44
2
RACA_BACSU
F:
[2-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
M
N
-
T
N
M
V
A
S
E
L
G
---
V
S
A
K
T
V
Q
R
W
V
K
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.81
16%
-248
- C4 -
-
2RN7
-
?
A:
[31-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
-
I
C
S
I
A
P
K
I
G
---
C
T
P
E
T
L
R
V
W
V
R
Q
H
E
--------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
52.53
11%
-65
- C4 -
-
2K27
-
PAX8_HUMAN
A:
[38-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
Q
G
V
R
-
P
C
D
I
S
R
Q
L
R
---
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
ETGSIRP
G
V
I
G
G
S
K
P
KV
A
T
--------------
P
K
V
V
E
---
K
I
G
D
Y
K
R
Q
---
N
P
T
M
F
A
---
W
E
I
--
R
D
R
L
L
A
-
E
-----
G
V
CDNDT
V
P
S
---------------
V
S
S
I
N
R
-------
I
I
R
T
K
V
Q
Q
P
F
N
L
-----------------------
13
HHSearch
50.91
22%
-183
- C4 -
-
2JRT
-
?
A:
[48-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
T
-
E
R
E
A
L
D
R
Y
S
---
L
S
E
E
E
F
A
L
W
R
S
A
V
A
--------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
50.33
23%
-190
- C4 -
-
5I41
-
RACA_BACSU
B:
[2-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
M
N
-
T
N
M
V
A
S
E
L
G
---
V
S
A
K
T
V
Q
R
W
V
K
Q
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
50.16
10%
-83
- C4 -
-
1PDN
2
PRD_DROME
C:
[30-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
D
G
I
R
-
P
C
V
I
S
R
Q
L
R
---
V
S
H
G
C
V
S
K
I
L
N
R
Y
Q
ETGSIRPGVIGGSKPRI
A
T
--------------
P
E
I
E
N
---
R
I
E
E
Y
K
R
S
---
S
P
G
M
F
S
---
W
E
I
--
R
E
K
L
I
R
-
E
-----
G
V
CDRST
A
P
S
---------------
V
S
A
I
S
R
-------
L
V
---------------------------------
1
PsiBlast_PDB
50.03
36%
-112
- C4 -
-
5N4W
-
?
A:
[426-513]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
I
---
D
D
K
D
V
F
Q
K
F
--
Y
A
R
M
L
A
---
K
R
L
--
I
H
-----------
G
L
-----
S
M
S
---------------
M
D
S
E
E
A
-------
M
I
N
K
L
------------------------------
11
HHSearch
49.82
13%
17
- C4 -
-
4U7B
-
MOS1T_DROMA
A:
[22-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
E
S
-
H
R
M
L
V
E
A
F
G
EQV
P
T
V
K
T
C
E
R
W
F
Q
R
F
K
-----------------
S
G
DFDVDDKE
H
G
K
P
P
K
R
Y
E
D
A
---
E
L
Q
A
L
L
D
E
---
D
D
A
Q
T
Q
---
K
Q
L
--
A
E
Q
-----------
L
-----
E
V
S
---------------
Q
Q
A
V
S
N
-------
R
L
R
E
M
G
K
I
Q
K
V
------------------------
25
Fugue
49.26
18%
14
- C4 -
-
2CKX
-
?
A:
[578-660]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
F
S
V
A
E
V
E
A
L
V
E
A
V
E
H
L
G
---
T
G
R
W
R
D
V
K
M
R
A
F
D
N
-----------------
A
D
--------------
H
R
T
Y
V
---
D
L
K
D
-
K
W
K
T
--
L
V
H
T
A
S
---
I
A
-----
P
Q
Q
R
-
R
-----
G
E
-----
P
V
P
---------------
Q
D
L
L
D
R
-------
V
L
A
A
H
A
Y
W
S
Q
Q
------------------------
5
HHSearch
48.60
10%
-72
- C- -
-
1K78
-
PAX5_HUMAN
A:
[45-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
H
Q
G
V
R
-
P
C
D
I
S
R
Q
L
R
---
V
S
H
G
C
V
S
K
I
L
G
R
Y
Y
E
TGSIKPGV
I
G
G
S
K
P
KV
A
T
--------------
P
K
V
V
E
---
K
I
A
E
Y
K
R
Q
---
N
P
T
M
F
A
---
W
E
I
--
R
D
R
L
L
A
E
R
VCDN-
D
T
-----
V
P
S
---------------
V
S
S
I
N
R
-------
I
I
R
T
K
------------------------------
8
HHSearch
48.50
12%
21
- C4 -
-
5UI5
-
?
V:
[234-341]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
L
T
-
L
R
E
V
S
S
E
I
G
---
I
H
E
S
T
L
S
R
I
V
N
S
K
Y
VKTPVGTYSLRTFF---
V
R
ESAEGLTQ------
G
E
L
M
K
---
L
I
K
E
I
V
E
N
E
DK
R
K
P
Y
S
D
---
Q
E
I
--
A
N
I
L
K
E
-
K
-----
G
F
-----
K
V
A
---------------
R
R
T
V
A
K
-------
Y
R
E
M
L
G
I
P
S
S
R
E
R
R
---------------------
28
Fugue
46.36
22%
-43
- C4 -
-
5TDW
-
A:
[1-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
T
C
I
C
D
L
---
N
D
D
D
G
F
---
T
I
Q
C
D
-----------------
H
C
--------------
N
R
------------
W
Q
H
--
A
I
C
Y
G
I
---
K
D
I
--
G
M
A
P
D
D
Y
L
-----
C
N
-----
S
C
D
---------------
P
R
E
V
D
I
-------
N
L
A
R
K
I
Q
Q
E
R
I
N
V
K
---------------------
2
PsiBlast_PDB
46.34
25%
-117
* C5 *
-
1AOC
-
COAG_TACTR
A:
[100-150]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
T
V
A
G
E
F
R
V
-----------------
I
V
--------------
Q
A
P
R
A
---
G
F
R
Q
C
V
W
Q
H
--
K
C
R
F
G
S
---
N
S
C
--
G
Y
N
----------
G
R
-----
C
T
Q
---------------
Q
R
S
V
V
R
-------
L
V
---------------------------------
30
Fugue
45.42
20%
-11
- C2 -
-
3WEB
1
?
A:
[1-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVFEDCGS
E
V
G
K
F
S
D
I
I
-
I
S
S
C
D
P
-------
S
E
E
K
C
S
I
I
R
E
S
E
I
-----------------
H
V
--------------
S
M
K
F
T
P
SV
D
V
K
N
V
E
A
K
A
--
F
G
V
L
L
D
---
V
P
V
--
P
F
P
L
K
K
-
P
-----
E
I
-----
C
K
D
PDSGVKCPLKKD
V
E
I
E
Y
K
V
T
F
-------
F
V
E
K
A
T
P
A
L
S
L
E
I
M
W
E
F
R
N
EKDEKI
T
C
V
K
F
P
A
K
IK
26
Fugue
44.95
16%
42
- C4 -
-
2LVS
-
?
A:
[1-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MP
S
V
N
D
S
L
D
I
V
E
K
L
Y
K
D
G
V
P
-
V
K
E
I
A
K
R
S
N
---
N
S
M
S
T
V
Y
K
A
L
E
K
L
E
-----------------
A
M
GRIKRRK
G
R
-----
Y
R
Q
H
R
---
R
L
T
E
E
E
L
A
T
--
I
R
E
L
Y
L
---
K
G
A
--
T
V
Y
E
I
A
-
R
-----
Q
L
-----
G
R
P
---------------
E
S
T
I
Y
Y
-------
A
L
K
K
L
G
L
K
L
E
-------------------------