@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKY5: (2017-10-30 )
MQEDIDAGKVSGTKIITHTQIRQELQSKVDVAQARFDANPSKKNKDKLADAQKDLSHAIRDGECLIKGCVPSEYLKK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......------.20.....--.--..-30........40.....----...----50-........60...--...-..--70......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQEDIDAGKVSG
T
K
I
I
T
H
------
T
Q
I
R
Q
E
L
Q
--
S
--
K
V
-
D
V
A
Q
A
RFDANPSKK
N
K
D
----
K
L
A
----
D
A
-
Q
K
D
L
S
H
AIRDG
E
C
--
L
I
K-GC--V
P
S
E
Y
LKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
65.05
25%
29
- C2 -
-
1V74
1
A:
[1-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
D
P
L
D
S
G
R
F
S
----------------
R
K
Q
L
D
--
K
--
K
Y
-
K
H
A
-
G
D
F
G
I
S
D
T
K
K
N
R
E
----
T
L
T
----
K
F
-
R
D
A
I
E
E
H
L
S
D
K
D
T
--
V
E
K
-
G
T
--
Y
R
R
E
K
G
S
K
V
Y
F
N
PNTM
N
V
V
I
I
K
SNGEFL
S
G
W
K
I
N
PDA
D
N
G
R
I
Y
L
E
TGEL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
61.17
22%
150
- C1 -
-
5B86
-
TNAP2_MOUSE
A:
[17-600]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DGPLPT
V
E
E
L
K
E
A
L
E
H
GRLEV
A
W
Q
V
L
A
L
E
R
Q
L
E
A
A
A
A
A
GGMS
N
E
E
L
V
W
R
Q
S
K
V
E
A
L
Y
V
L
L
C
D
Q
V
L
G
V
L
R
R
PLEAAP
E
R
L
S
Q
A
L
A
V
V
S
Q
E
E
L
E
D
R
R
A
S
G
G
P
L
A
A
A
LEATRP
R
R
W
L
Q
R
W
R
--
G
--
V
V
A
E
V
A
A
E
R
L
D
A
Q
P
G
R
S
E
A
E
----
S
R
F
L
H
M
G
R
T
M
K
E
D
L
E
V
V
V
E
R
L
K
P
--
L
F
P
-
D
E
FN
V
V
R
T
Y
A
E
S
Y
H
Y
H
F
A
S
H
L
C
A
L
A
Q
FELC
E
R
D
T
Y
L
L
L
L
W
V
Q
NLYPNDILNSPKLAQELQGVGLGSLLP
P
K
Q
I
R
L
L
E
A
M
F
L
S
N
E
V
T
S
V
K
Q
L
M
A
R
A
L
E
L
E
S
Q
R
W
T
Q
DV
A
P
Q
S
LDGHCHSEL
A
I
D
I
L
Q
I
I
S
Q
G
Q
T
K
A
E
N
I
T
S
D
V
G
M
Q
I
K
Q
L
L
L
V
E
L
A
A
L
L
R
S
Y
Q
R
A
F
D
E
F
L
E
KSKLLRN
Y
R
V
N
I
M
A
N
I
N
N
C
L
F
F
W
T
S
V
E
Q
K
WQIS
H
D
S
L
N
R
L
L
E
P
L
K
D
L
K
A
H
G
F
D
T
L
L
Q
S
L
F
L
D
L
K
P
L
F
K
K
F
T
Q
T
R
WAN
P
V
E
T
L
E
E
I
I
T
T
V
S
S
S
LPEFSELQ
D
C
F
R
E
E
L
M
E
T
V
H
L
H
L
V
K
E
Y
I
I
R
L
C
KRRLVLKT
A
E
Q
Q
Q
Q
L
A
R
H
I
L
A
N
A
D
A
I
Q
G
F
C
T
E
N
GSTATWLHR
A
L
P
M
I
A
E
I
I
R
LQD
S
S
A
I
K
I
E
V
A
T
Y
A
T
W
YPDFS
K
G
H
L
N
A
I
L
A
IKGNLPS
S
E
V
R
S
I
R
N
I
L
DINTGV
Q
E
P
P
RPLFSLIKVT
18
Fugue
48.64
26%
-5
* C2 *
-
5IM8
-
A:
[1-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
N
D
H
A
R
F
L
Q
T
A
K
N
I
T
E
------
R
V
S
M
A
T
A
S
--
S
--
Q
V
-
L
I
--------
P
E
I
N
L
N
D
----
T
F
D
----
T
F
-
A
L
D
F
S
R
E
K
K
L
L
E
C
--
L
----------
D
Y
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
44.79
19%
71
- C2 -
-
5T5I
3
?
A:
[1-569]
MEYIIKNGFVYCPLNGVDGEK
M
D
I
C
V
K
DGKIVESVSDS
A
K
V
I
D
ASG
K
I
V
M
P
G
GVDPHSHIAG
A
K
V
N
V
G
R
M
Y
R
P
E
D
S
K
R
D
A
E
K
F
K
GGRAGSGFSVPS
T
F
M
T
G
Y
R
Y
A
Q
M
GYTTAMEAAMPPLL
A
R
H
T
H
E
E
F
H
D
TPI
I
D
H
A
A
Y
P
L
F
GNN
W
F
V
M
E
Y
L
K
E
GD
V
D
A
C
A
A
Y
A
S
W
L
L
R
A
T
KGYTIIVNPA
G
T
E
A
W
GWG
G
N
V
H
G
IYDPAPYFDIT
P
A
E
I
I
K
G
L
A
E
V
N
E
K
L
QLPHSIHLHCNDLGHPGN
Y
E
T
T
L
A
S
F
D
V
PKN
I
K
P
N
P
ATGSRDTV
L
Y
A
T
HVQFHSYGGTTWRDFVSE
A
P
K
I
A
D
Y
V
N
K
N
DH
I
V
I
D
V
GQITLDE
T
T
T
M
T
AD
G
P
M
E
Y
D
L
H
S
L
NG
L
K
W
A
N
C
D
V
E
L
E
T
G
S
G
V
V
P
F
I
YSARA
P
V
P
A
V
Q
W
A
I
G
M
E
L
F
L
L
IDNPEK
V
C
L
T
TDSPNAGPFTR
Y
P
R
V
I
A
W
L
M
S
N
K
Y
R
M
N
L
I
E
G
ELHK
W
A
Q
R
K
S
TVATID
R
E
Y
T
F
S
E
I
A
Q
I
T
R
A
T
S
A
K
V
L
G
L
------
S
D
T
K
G
H
L
G
--
V
--
G
A
-
D
A
D
I
A
V
Y
D
I
N
P
E
T
V
D
P
S
AE
Y
M
A
I
E
----
E
A
-
F
S
R
A
A
C
V
L
K
D
G
E
I
--
V
V
K
D
G
E
--
V
V
A
S
P
H
G
R
T
Y
W
V
D
T
Q
V
D
E
S
I
Y
S
E
V
L
A
N
V
E
S
K
F
K
Q
YYSVNFANYPVQDDYLP
K
S
A
P
V
K
G
V
ML-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
43.87
19%
115
- C2 -
-
5FHY
-
FLID2_PSEAE
A:
[21-249]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIL
K
A
S
A
T
Q
S
A
V
A
G
T
Y
Q
I
Q
V
N
S
L
A
T
S
S
K
I
A
L
Q
AIADPAN
A
K
F
N
S
G
T
L
N
I
S
V
GDTKLP
A
I
T
V
D
SSNNT
L
A
G
M
R
D
A
I
N
Q
A
G
K
EAG
V
S
A
T
I
I
T
D
NS
G
S
R
L
V
L
S
S
TKTGDGK
D
I
K
V
E
V
S
D
DGSGGNTSLSQLAFDPATAPKLSDGA
A
A
G
Y
VT
K
A
A
N
G
E
I
T
V
DG
L
K
R
S
I
A
S
N
S
V
S
D
V
I
D
G
V
S
------
F
D
V
K
A
V
T
E
--
A
G
K
P
I
-
T
L
T
V
S
R
D
D
A
G
V
-
K
D
N
V
K
----
K
F
V
----
E
A
-
Y
N
T
L
T
K
F
I
N
E
Q
T
V
--
V
T
K
-
V
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
43.65
27%
-103
- C3 -
-
1D2T
-
?
A:
[190-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
S
D
V
D
A
A
R
V
V
G
S
A
V
V
A
T
------
L
H
T
N
P
A
F
Q
--
Q
--
Q
L
-
Q
K
A
K
A
E
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
41.66
19%
75
- C2 -
-
5DA1
-
?
A:
[2-223]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSSPL
P
K
V
A
H
N
L
GFYFSPDLTQFAKLPAELAPH
W
P
V
V
T
TQNNERWP
D
R
L
V
A
S
LRPIHKYSRACIG
A
G
Y
M
V
G
P
S
V
F
L
G
T
P
G
V
V
S
Y
Y
L
T
------
K
F
V
R
G
E
A
Q
V
L
P
--
E
T
-
V
F
S
T
G
R
I
E
V
D
C
R
E
Y
L
D
D
----
R
E
R
----
V
V
-
A
E
S
L
P
H
A
F
I
G
D
V
K
GT
T
V
G
-
G
C
HH
V
T
S
K
Y
L
P
R
FLPKES
V
A
V
V
G
V
S
SPGKAAKA
V
C
T
L
T
DVYLPDLEAYLHPETQ
S
R
C
W
K
V
M
L
DF
K
E
V
R
L
M
V
W
KD
K
T
A
Y
F
Q
L
E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.33
27%
-23
- C3 -
-
1IW8
-
?
A:
[190-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
S
D
V
D
A
A
R
V
V
G
S
A
V
V
A
T
------
L
H
T
N
P
A
F
Q
--
Q
--
Q
L
-
Q
K
A
K
A
E
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
39.78
15%
-40
- C2 -
-
1C4Q
2
STXB_BPH19
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
D
C
V
T
G
K
V
E
Y
------
T
K
Y
N
D
D
D
T
--
F
--
T
V
-
K
V
G
D
K
E
L
A
T
N
R
A
N
L
Q
S
L
----
L
L
S
----
A
Q
-
I
T
G
M
T
V
T
I
K
T
N
A
C
--
H
-
N
-
G
G
--
G
F
S
E
V
I
F
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.31
27%
-66
- C3 -
-
1EOI
-
?
A:
[190-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
S
D
V
D
A
A
R
V
V
G
S
A
V
V
A
T
------
L
H
T
N
P
A
F
Q
--
Q
--
Q
L
-
Q
K
A
K
A
E
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
37.37
31%
7
* C3 *
-
1ZVZ
-
B:
[2-23]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
V
R
Q
A
R
----
I
L
A
----
Q
A
-
T
S
D
L
V
N
A
I
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.65
19%
-
- C- -
-
1SF9
-
YFHH_BACSU
A:
[57-72]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
L
A
V
L
E
R
----
K
I
T
----
M
A
-
K
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.29
21%
-321
- C4 -
-
4FJV
2
OTUB2_HUMAN
A:
[37-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
----
K
R
-
F
T
A
I
R
K
T
K
G
D
G
N
C
--
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.86
22%
-417
- C4 -
-
4DHZ
-
OTUBL_CAEEL
A:
[72-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
----
E
V
-
Y
G
E
I
R
Y
I
R
G
D
G
N
C
--
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.63
22%
-
- C3 -
-
2IC6
-
?
B:
[21-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
--
Q
--
K
L
-
K
D
A
E
R
A
V
E
L
D
P
D
D
V
N
K
S
----
T
L
Q
----
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.63
22%
-
- C3 -
-
2IC6
-
?
A:
[21-47]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
--
Q
--
K
L
-
K
D
A
E
R
A
V
E
L
D
P
D
D
V
N
K
S
----
T
L
Q
----
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
27.25
22%
138
- C3 -
-
2K48
-
A:
[55-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
--
Q
--
K
L
-
K
D
A
E
K
A
V
E
V
D
P
D
D
V
N
K
S
----
T
L
Q
----
N
R
-
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
26.03
23%
-298
- C3 -
-
5B86
-
TNAP2_MOUSE
A:
[177-189]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
E
--
R
L
K
-
P
L
--
F
P
D
E
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
23.10
23%
-148
- C3 -
-
5B86
-
TNAP2_MOUSE
B:
[177-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
E
--
R
L
K
-
P
L
--
F
P
D
E
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
9.61
20%
-
* C4 *
-
4DHI
-
OTUBL_CAEEL
B:
[76-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
E
I
R
Y
I
R
G
D
G
N
C
--
F
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------