@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKY6: (2017-10-30 )
MKLEQKIIDLLCEIPDNVDYTDVAEDLDLEDISEIRIKQLRELLTNSDIYTISSC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------.........10..------....--..20.......-----------.-----.30..----...----...40.--...-....50....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M
K
L
E
Q
K
I
I
D
L
L
CE------IPDN--V
D
Y
-
T
D
V
A
EDL-----------
D
-----
L
E
D
I
S
----
E
I
R
----
I
K
Q
L
R
E
--
L
LT-NSD
I
Y
T
ISSC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
62.52
25%
-14
- C3 -
-
5TNV
-
?
A:
[21-326]
-----------------------------------------------------------------------------------------------------------MYSAHTW
P
I
A
A
N
MLGFGNRAPDGGHIKDAP
A
G
V
W
A
K
Q
L
R
Q
V
R
E
L
------
G
F
D
H
--
I
D
P
-
T
D
--
A
W
V
-----------
P
-----
L
A
A
L
S
----
D
S
R
----
I
E
E
F
R
T
--
V
L
A
-
D
E
G
L
-
A
I
S
S
I
S
M
T
RSSIVDVEN
G
E
K
N
L
A
D
A
H
R
L
I
D
L
A
P
S
F
GAT
I
V
N
T
G
FMQALT
P
E
Q
E
K
QIWFWLVQ
G
H
V
D
D
PAL
R
D
L
A
I
E
R
V
R
E
L
G
D
H
A
R
T
N
G
I
Q
L
S
L
E
M
Y
E
DTYIGT
P
D
D
A
V
A
F
I
K
D
V
DHDAVGLNPDL
G
N
L
V
R
LHRPMPH
P
S
E
M
Y
A
K
V
LPYSNFWH
I
K
N
Y
S
R
D
F
D
PATG
A
Y
S
S
A
P
L
P
LKYGYVN
Y
R
Q
I
I
R
L
A
L
E
L
G
Y
T
G
P
F
C
C
E
H
Y
G
SD
S
L
G
V
C
A
E
N
R
E
Y
I
L
Q
V
L
T
S
A
L
A
26
Fugue
59.64
24%
-56
* C3 *
-
5TQB
8
?
B:
[1-335]
SIN
P
K
E
L
L
D
R
A
T
T
L
L
E
E
GD
I
E
T
A
A
K
V
A
R
T
A
Y
E
H
I
GENGRH
A
G
A
A
L
T
L
L
G
Q
I
H
V
E
L
GD
I
D
A
A
R
N
Y
Y
A
A
A
V
K
V
D
E
DGSLPEELGGGP
E
K
F
L
W
L
A
Q
L
SEEG
G
H
D
S
V
A
W
F
E
R
G
A
T
V
L
R
A
Q
I
Q
S
L
M
D
S
L
E
QRPLS
R
G
Q
V
E
A
A
I
A
D
K
R
R
R
L
A
E
T
L
C
A
------
V
V
E
V
----
Y
M
T
D
----
L
-----------
S
-----
W
E
D
D
A
----
E
Q
R
----
C
E
A
L
I
T
--
E
A
T
M
I
A
P
E
W
P
E
T
W
Q
T
V
A
N
V
R
I
S
Q
ER
T
E
E
A
R
E
A
L
R
R
S
L
G
L
WTHLPPEDPGVPP
F
P
S
R
V
S
L
V
R
L
L
I
E
V
DM
E
E
E
A
L
E
V
T
E
R
L
I
A
E
DDLS
V
E
V
W
Y
L
G
G
Y
A
R
Y
R
L
G
E
K
E
R
E
A
S
GQASEPE
A
W
K
D
T
W
R
S
S
R
K
W
L
R
Q
C
L
K
V
F
E
A
E
EYED
E
R
L
G
E
H
A
K
E
L
I
A
S
I
I
G
E
L-----------------------------------------------------------------------------
3
PsiBlast_PDB
58.78
33%
34
- C3 -
-
5LDX
-
NDUA5_BOVIN
V:
[29-76]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
I
L
D
V
L
G
H
------
I
P
K
N
--
A
A
Y
-
R
K
Y
T
E
Q
I
-----------
T
-----
N
E
K
L
S
----
M
V
K
AEPD
V
K
K
L
E
E
--
R
L
Q
-
G
G
Q
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.56
33%
34
- C3 -
-
5LDW
-
NDUA5_BOVIN
V:
[29-76]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
I
L
D
V
L
G
H
------
I
P
K
N
--
A
A
Y
-
R
K
Y
T
E
Q
I
-----------
T
-----
N
E
K
L
S
----
M
V
K
AEPD
V
K
K
L
E
E
--
R
L
Q
-
G
G
Q
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
57.43
33%
40
- C3 -
-
5LC5
-
NDUA5_BOVIN
V:
[29-76]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
I
L
D
V
L
G
H
------
I
P
K
N
--
A
A
Y
-
R
K
Y
T
E
Q
I
-----------
T
-----
N
E
K
L
S
----
M
V
K
AEPD
V
K
K
L
E
E
--
R
L
Q
-
G
G
Q
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
56.45
18%
45
- C3 -
-
1XMK
-
A:
[1-79]
---------------------------------------------------------------------------------------------------------------------------------GSHMAS
L
D
M
A
E
I
K
E
K
I
C
D
Y
L
F
N
-------
V
S
D
--
S
S
A
-
L
N
L
A
K
N
I
-----------
G
-----
L
T
K
A
R
----
D
I
N
-----
A
V
L
I
D
--
M
E
R
-
Q
G
D
V
Y
R
Q
G
T
T
P
P
I
W
H
L
T
D
K
K
R
E
R
M
QIK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
49.54
16%
-25
- C3 -
-
2DK8
-
RPC6_MOUSE
A:
[1-81]
------------------------------------------------------------------------------------------------------------------------------GSSGSSGPDAD
P
V
E
I
E
N
R
I
I
E
L
C
H
Q
------
F
P
H
G
--
I
T
D
-
Q
V
I
Q
N
E
M
-----------
P
-----
H
I
E
-
A
----
Q
Q
R
----
A
V
A
I
N
R
--
L
L
S
-
M
G
Q
L
D
L
L
R
S
N
T
G
L
L
Y
R
I
K
D
S
G
P
S
SG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
49.41
29%
126
- C3 -
-
1RP3
-
?
B:
[2-88]
----------------------------------------------------------------------------------------------------------------------------------------VN
R
I
E
L
S
R
L
I
G
L
L
L
E
TSGTN
K
I
E
D
K
--
V
T
L
-
S
K
I
A
Q
E
L
-----------
S
-----
K
N
D
V
E
EKD
L
E
K
K
----
V
K
E
L
K
E
--
K
I
E
-
K
G
E
-
Y
E
V
S
D
E
K
V
V
K
G
L
I
E
F
F
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
49.05
21%
-310
- C- -
-
4YNL
-
HETR_NOSS1
A:
[256-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
P
----
P
E
R
----
W
D
E
A
M
Q
--
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
47.59
17%
-21
- C3 -
-
3I71
-
EUTK_ECOLI
A:
[4-59]
--------------------------------------------------------------------------------------------------------------------------------------------
S
A
D
E
L
L
A
L
L
T
S
------
V
R
Q
G
--
M
T
A
-
G
E
V
A
A
H
F
GW---------
P
-----
L
E
K
A
R
----
N
A
L
----
E
Q
L
F
S
A
GT
L
R
K
-
R
S
S
R
Y
R
L
K
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
45.40
22%
75
- C3 -
-
5U9N
2
?
A:
[4-150]
---------------------------------------------------------------------------------------------------------EADYD
W
R
N
E
C
L
R
I
L
N
L
L
R
K
EQNSFLFENPVLES
N
D
L
T
E
E
T
K
N
R
Y
K
E
V
-----
I
P
E
A
--
C
D
Y
-
I
T
I
E
K
R
L
-----------
N
N
KNQT
I
E
N
P
H
----
E
F
E
-----
R
L
V
K
L
--
I
F
S
-
N
C
M
I
F
N
P
N
S
G
ECK
W
I
Y
D
S
A
K
Q
S
L
N
K
F
N
N
L
W
N
K
SN
V
F
L
L
Y
S
N
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
44.54
36%
157
- C3 -
-
2VK9
-
?
A:
[52-97]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
N
E
------
L
V
D
N
Y
Q
T
K
Y
-
P
S
S
G
R
N
L
-----------
A
-----
L
E
N
F
R
----
D
S
L
----
Y
S
E
L
R
E
--
L
I
K
-
N
S
R
T
S
T
I
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
41.05
13%
34
- C3 -
-
1BPY
2
DPOLB_HUMAN
A:
[10-91]
----------------------------------------------------------------------------------------------------------------TLN
G
G
I
T
D
M
L
T
E
L
A
N
F
E
K
NVSQA
I
H
K
Y
N
A
Y
R
K
A
A
S
V
I
A
K
------
Y
P
H
K
--
I
K
---
S
G
A
E
A
K
-----------
K
-----
L
P
G
V
G
----
T
K
I
----
A
E
K
I
D
E
--
F
L
A
-
T
G
K
L
R
K
L
E
K
I
R
Q
D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
39.29
21%
-264
- C3 -
-
4YNL
-
HETR_NOSS1
N:
[256-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
P
----
P
E
R
----
W
D
E
A
M
Q
--
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.23
22%
-203
- C3 -
-
2DI0
-
A:
[9-35]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
V
E
L
----
D
S
L
----
I
S
Q
V
K
D
--
L
L
P
-
D
L
G
E
G
F
I
L
A
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
33.49
16%
-167
- C3 -
-
1QO7
-
?
B:
[7-47]
------------------------------------------------------------------------------------------------------------------------------------------------------
K
------
F
P
S
S
--
A
S
I
-
S
P
N
P
F
T
V
-------------------
S
I
P
----
D
E
Q
----
L
D
D
L
K
T
--
L
V
R
-
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.33
15%
-180
- C3 -
-
2M3D
-
A:
[67-86]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
F
D
V
P
----
T
A
S
----
V
T
E
I
Q
E
--
K
W
H
-
D
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
28.77
24%
-185
- C3 -
-
2WX3
-
DCP1A_HUMAN
A:
[548-564]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
T
L
I
H
--
L
I
K
--
N
D
S
S
F
L
S
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
27.76
24%
-155
- C3 -
-
2WX3
-
DCP1A_HUMAN
C:
[548-564]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
T
L
I
H
--
L
I
K
--
N
D
S
S
F
L
S
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.71
16%
97
- C2 -
-
1IIO
-
?
A:
[28-75]
-------------------------------------------------------------------------------------------------------------------------------------------------
E
E
L
M
A
A
------
L
P
N
G
--
P
D
T
-
T
C
K
S
G
D
V
ELKASDAGQVL
T
-----
A
D
D
F
P
----
F
K
S
----
A
E
E
V
A
D
--
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------