@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLI3: (2017-11-02 )
MSLQRGIYQHYKGNLYQVFSVAKHSETEEELVVYQCLYGDYSTWVRPLDMFTETVQMSDGSIVPRFKLIQST
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------......-...10........--------20..------------......30--..-.....--.---40-......-...-----50---..-.......--60....-..----------..70.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------M
S
L
Q
R
G
-
I
Y
Q
H
YKG
N
L
Y
Q
V
F
--------
S
VAK------------HSE
T
E
E
E
L
--
V
V
-
Y
Q
C
LY--G---D--
Y
S
T
W
V
R
-
P
L
D
-----
M
----
F
T
-
E
T
VQMSD--G
S
I
V
P
R
-
F
K
----------
L
IQST-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
80.22
37%
-141
- C7 -
-
3BE3
-
?
A:
[11-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
V
Y
R
H
Y
K
G
D
H
Y
L
A
L
--------
G
L
A
R
------------
A
D
E
T
D
E
V
V
--
V
V
-
Y
T
R
L
Y
A
R
A
---
G
--
L
P
M
S
T
R
-
L
L
R
-----
I
----
W
N
-
E
T
V
D
T
G
A
--
G
P
-
Q
P
R
-
F
A
----------
Y
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
79.86
34%
-87
- C7 -
-
3BE3
-
?
B:
[6-78]
----------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
F
R
P
G
V
Y
R
H
Y
K
G
D
H
Y
L
A
L
--------
G
L
A
R
------------
A
D
E
T
D
E
V
V
--
V
V
-
Y
T
R
L
Y
--
A
---
R
A
G
L
P
M
S
T
R
-
L
L
R
-----
I
----
W
N
-
E
T
V
D
T
-
G
--
A
G
P
Q
P
R
-
F
A
----------
Y
V
G
H
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
77.57
34%
-79
- C7 -
-
3BE3
-
?
A:
[6-78]
----------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
F
R
P
G
V
Y
R
H
Y
K
G
D
H
Y
L
A
L
--------
G
L
A
R
------------
A
D
E
T
D
E
V
V
--
V
V
-
Y
T
R
L
Y
--
A
---
R
A
G
L
P
M
S
T
R
-
L
L
R
-----
I
----
W
N
-
E
T
V
D
T
-
G
--
A
G
P
Q
P
R
-
F
A
----------
Y
V
G
H
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
63.96
22%
-
- C- -
-
3Q9D
-
Y803_CHLPN
A:
[8-182]
---------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
E
D
N
-
V
F
L
L
L
E
G
N
L
K
R
I
F
--------
A
T
P
I
------------
G
Y
T
T
F
R
E
F
Q
N
V
V
-
F
N
C
A
N
--
G
---
Q
------
Q
E
-
I
A
N
-----
F
----
F
F
-
E
M
L
I
N
----
G
K
L
T
Q
E
-
L
A
----------
P
Q
Q
K
Q
A
A
H
S
L
I
A
E
F
M
M
P
I
R
V
A
K
D
I
H
E
RGEFIN
F
I
T
S
D
M
L
T
Q
QE
R
C
I
F
L
N
R
L
A
R
VDG
Q
E
F
L
L
M
T
D
V
Q
N
T
C
H
L
I
R
H
L
L
A
R
L
L
E
A
Q
K
N
P
V
G
E
K
N
L
Q
E
I
Q
E
E
I
T
S
L
K
N
H
F
D
E
L
T
K
A------------------------------------------------------------------------------------------------------------
26
Fugue
54.81
28%
-22
* C7 *
-
1JDC
-
?
?:
[358-418]
--------------------------------------------------------------------------------------------------------------------------------------------------R
A
D
S
A
I
S
-
F
H
S
G
Y
S
G
--------------
L
V
A
T
------------
V
S
G
S
Q
Q
T
L
--
V
V
-
A
L
------------
N
S
D
L
G
N
-
P
G
Q
-----
V
AS
G
S
F
S
-
E
A
V
N
A
S
N
--
G
----
Q
-
V
R
----------
V
W
R
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
44.52
42%
-242
- C5 -
-
3DPJ
-
?
A:
[40-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------
I
S
R
G
N
F
Y
Y
H
F
K
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
42.86
25%
-0
- C3 -
-
2WBX
-
CAD23_MOUSE
A:
[1-102]
---------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
V
N
R
L
P
F
F
T
N
H
F
F
D
T
Y
L
L
I
S
EDTPVGS
S
V
T
Q
L
L
A
R
D
MDN
D
P
L
V
F
G
V
S
G
E
E
A
--
S
R
F
F
A
V
E
P
--
D
---
T
--
G
V
V
W
L
R
Q
P
L
D
RETKS
E
----
F
T
-
V
E
F
S
V
S
D
HQ
G
V
I
T
R
K
-
V
N
----------
I
Q
V
G
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
40.78
42%
-197
- C5 -
-
3DPJ
-
?
F:
[40-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------
I
S
R
G
N
F
Y
Y
H
F
K
T
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.26
37%
-45
- C6 -
-
2QC1
-
ACHA_MOUSE
B:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
E
H
E
T
--
R
L
-
E
A
K
L
F
--
E
---
D
--
Y
S
S
V
V
R
-
P
V
E
-----
D
----
H
R
-
E
I
V
Q
V
T
V
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
37.41
25%
-156
- C- -
-
2OER
-
?
B:
[54-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
G
S
L
Y
Q
Y
F
P
N
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.40
37%
-22
- C6 -
-
5HBV
-
ACHA_MOUSE
B:
[1-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
E
H
E
T
--
R
L
-
E
A
K
L
F
--
E
---
D
--
Y
S
S
V
V
R
-
P
V
E
-----
D
----
H
R
-
E
I
V
Q
V
T
V
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
33.95
15%
36
- C4 -
-
1SQR
-
RL35A_PYRFU
A:
[1-87]
--------------------------------------------------------------------------------------------------------------------------------------------M
R
I
K
G
V
V
L
S
Y
R
R
S
-
K
E
N
Q
H
N
N
V
M
I
I
K
P
--------
L
D
V
N
------------
S
R
E
E
A
S
K
L
--
I
G
-
R
L
V
L
W
--
K
---
S
--
P
S
G
--
K
-
I
L
K
-----
G
----
K
I
-
V
R
V
H
G
T
K
--
G
A
V
R
A
R
-
F
E
KGLPGQALGD
Y
V
E
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
33.84
25%
-121
- C1 -
-
4L62
-
?
H:
[36-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------
V
P
K
G
S
F
Y
H
Y
F
K
S
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
33.45
19%
48
- C6 -
-
4EPQ
1
?
A:
[34-472]
D
Y
Q
F
P
L
PQKN
S
E
L
W
I
I
Q
K
K
T
L
Q
D
L
S
S
GKQKLDS
F
Q
S
L
E
S
I
L
E
I
L
R
DSKNQNDEKY
F
N
L
K
A
V
F
E
Q
LD
K
E
E
Q
T
Y
F
L
E
Q
F
I
P
K
I
C
Q
L
V
L
K
IKKK
Q
L
K
N
Q
IPKESKIY
E
A
A
F
S
R
E
E
I
S
Y
Y
V
S
C
M
F
L
CILKDQDRKIYKDFRLIYLKDLV
Q
Q
I
N
I
R
R
Q
-
E
K
I
K
C
F
Y
E
Y
L
K
Q
A
--------
L
D
F
S
------------
E
K
E
S
K
E
V
V
--
I
F
-
Q
R
I
N
C
--
G
Q
L
E
D
--
Y
E
N
W
V
D
-
K
L
K
-----
A
----
I
K
L
K
N
V
Q
L
T
D
--
D
K
L
I
E
D
-
F
P
G---------
T
L
Q
V
D
FANCDIGGGILGNGLV
Q
E
E
I
R
F
C
V
C
PEM
L
V
S
L
L
V
F
DQSMEAN
E
V
I
I
M
K
G
I
K
Q
Y
S
DYQGYSNS
F
R
F
V
K
M
GNS
K
I
Q
K
Q
K
R
T
N
P
Q
T
I
L
A
I
D
A
L
CFNSSDNQFS
E
V
N
V
S
R
E
L
N
K
S
Y
M
G
F
K
QEDQLK
T
I
S
T
G
KWGCGAFLGV
F
D
L
K
F
A
I
Q
W
I
A
S
S
R
S
N
K
K
M
I
I
C
TFQD
E
Q
T
T
K
Q
I
Q
Q
V
F
D
L
Y
KQKN
A
S
I
F
L
K
L
V
M
D
YPNSKYMEDYT
L
L
E
Y
L
I
E
L
G
K
E
KA
7
HHSearch
33.20
18%
-62
- C2 -
-
1SGM
-
YXAF_BACSU
A:
[38-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------
A
P
K
G
S
L
Y
H
F
F
P
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
33.12
17%
-194
- C5 -
-
2V57
-
?
C:
[44-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------
V
G
R
S
T
V
H
R
Y
Y
P
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
32.74
10%
-10
- C7 -
-
2KCT
-
?
A:
[43-130]
------------------------------------------------------------------------------------------------------------------------------------M
A
T
P
Q
D
KLH
T
V
R
L
F
G
T
V
A
A
D
G
-
L
T
M
L
D
G
A
P
G
V
R
F
R
--------
L
E
D
K
------------
D
N
T
S
K
T
V
W
--
V
L
-
Y
K
-----
G
---
A
--
V
P
D
T
F
K
-
P
G
V
-----
E
----
V
I
-
I
E
G
G
L
A
P
--
G
E
D
T
F
K
-
A
R
----------
T
L
M
T
K
C
PLE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.64
8%
-194
- C5 -
-
3CCY
-
?
A:
[43-55]
-----------------------------------------------------------------------------------------------------------------------------------------------------
C
S
K
S
R
L
Y
H
Y
F
D
S
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
31.63
25%
-136
- C5 -
-
3PAS
1
?
D:
[40-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
A
T
L
Y
I
Y
Y
E
D
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
29.30
12%
39
- C6 -
-
2DOQ
-
D:
[2-84]
-----------------------------------------------------------------------------------------------------------------------------------PLGSNEEANRFANQAK
L
R
V
Q
E
A
-
V
F
Y
I
W
S
D
K
T
L
K
Y
S
-----------
Q
M-----------
A
N
D
E
A
E
S
F
--
R
N
-
T
W
L
L
F
--
R
---
S
--
F
Q
Q
W
I
T
-
L
T
Q
-----
T
----
F
K
-
E
Q
S
R
L
A
D
--
Q
A
F
L
N
K
M
F
R
----------
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------