@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VLX9: (2017-11-05 )
MFMRRVLIAIASLVVITSIVFFTYQHIKQQQAKDSSQMFDVVMTEKMNQLYDQAQDWTKPVQLDIHDKRLAGHYKQVSEFLLSYWVQNVNARNEYLRELKAAKWDTFLNVDRLDHDKKQKYAETEKMLADVRRASDKYQSEYEKIHKTFLAKNQELSVDKEMRQILEIKLGAQQKADQDHAIFMIELQILDKAEEMFKLLKTYPWQKKDQMILFHENAQVKKFNALYQDVLKLNAKMEKLRKRM
Atome Classification :
(20 SA)
-----------..-.......10.-------......------.20----------........30.........40......-...50.......----.60....-....70..-......80-..----......-.90.-.......--100.....-----..110.......120....----...130.-......140......----.150..------...-..160-..-..-----.---.-...170.-......180----------------------....-..-.190....----------...--200---..----------------......210.....------------..220........230....-...240...-
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------M
F
-
M
R
R
V
L
I
A
I
A
S
-------
L
V
V
I
T
S
------
I
V
F
----------
F
T
Y
Q
H
I
K
Q
Q
-QAK
D
S
S
Q
M
F
D
-
V
V
M
T
E
K
-
M
N
Q
L
Y
D
Q
A
Q
DWT----K
P
V
Q
L
D
I-H
D
K
R
L
A
G
H
-
Y
K
Q
V
S
E
F
--
L
L
----
S
Y
W
V
Q
N-V
N
A
R
-
N
E
Y
L
R
E
L
--
K
AAKWD
T
F
-----
L
N
V
D
RLD
H
D
K
K
Q
K
Y
A
E
T
E
K
----
M
L
A
D
V
R
R
-
A
S
D
K
Y
Q
S
E
Y
E
K
I
H
K
T
----
F
LAKNQ------EL
S
-
V
D
K
---
E
M
-
R
Q
-----
I
---
L
-
E
I
KLGAQ-QKADQD
H
A
I
----------------------
F
M
I
E
-
L
Q
-
I
L
D
K
A
E
E
M
----------
F
K
L
--
L
K----TY----------------PWQKKD
Q
M
I
L
F
HEN------------AQ
V
-
K
K
F
N
A
L
Y
Q
D
V
L
K
L
N
A
K
-
M
E
K
L
R
-KRM-
24
Fugue
72.24
14%
-495
- C- -
-
4RWR
-
?
A:
[63-331]
VYREKQKKVES
L
P
M
E
E
Y
V
T
G
V
V
A
S
E
MNASFE
I
E
A
L
K
A
------
Q
A
L
----------
A
A
R
T
F
V
V
Q
R
M
L
S
G
G
K
K
N
N
A
D
-
V
T
D
T
D
Q
V
Y
K
S
K
E
E
L
K
K
Q
W
G
----
N
N
--
Y
E
N
-
N
L
K
K
I
E
E
A
-
V
S
K
T
A
G
Q
--
V
L
----
T
Y
E
G
K
P
-
I
S
A
S
-
F
-----
F
--
S
T
S
N
G
R
T
E
-----
N
A
A
D
Y
W
G
N
D
Y
P
--
Y
L
K
S
V
D
------
S
P
W
D
Q
-
A
S
P
K
F
T
S
E
Q
I
F
T
V
A
D
----
F
Q
K
R
L
-----------------
G
V
-
K
V
-----
L
---
A
-
D
G
K
V
G
D
I
-
K
G
R
T
E
G
K
R
V
----------------------
K
D
V
A
-
F
Q
G
K
T
L
T
G
R
D
V
----------
R
D
K
--
L
E
LRSS
D
F
----------------
T
W
K
Q
E
G
D
K
I
V
V
T
T
K
G
FGHGVGMS
Q
Y
G
A
N
G
M
A
A
E
G
K
K
Y
T
D
I
V
A
H
Y
Y
K
G
V
E
I
K
T
M
N
D
Y
-
23
Fugue
52.55
13%
-69
- C6 -
-
4WIK
-
SFPQ_HUMAN
A:
[370-597]
----------------------
A
A
-------
A
L
S
V
R
N
------
L
--------------
S
P
Y
V
S
N
E
-
L
L
E
E
A
F
S
Q
F
G
---
P
I
E
R
-
A
V
V
I
V
D
D
R
G
R
S
T
----
G
K
G
I
V
E
F
---
A
S
K
P
A
A
-
R
K
A
F
E
R
C
--
S
E
----
G
V
F
L
L
T
-
T
T
P
R
-
P
V
I
V
E
P
L
--
E
Q
L
D
D
E
D
G
-----
L
P
-
E
K
L
A
Q
K
N
P
M
Y
Q
K
E
R
E
T
----
P
P
R
F
A
Q
H
-
G
T
F
E
Y
E
Y
S
Q
R
W
K
S
L
D
----
E
M
E
K
Q
Q
------
R
E
Q
-
V
E
K
---
N
M
-
K
D
-----
A
---
K
-
D
K
L
E
S
E
M
-
E
D
A
Y
H
E
H
Q
A
----------------------
N
L
L
R
-
Q
D
-
L
M
R
R
Q
E
E
L
----------
R
R
M
E
E
L
H
----
N
Q
----------------
E
M
Q
K
R
K
E
M
Q
L
R
Q
E
E
------------
E
R
R
-
R
R
E
E
E
M
M
I
R
Q
R
E
M
E
E
Q
-
M
R
R
Q
R
-
E
E
S
Y
19
Fugue
50.61
16%
14
- C3 -
-
3FMG
-
VP7_ROTRH
A:
[28-262]
---------------
T
S
T
L
C
L
Y
Y
P
-------
T
E
A
A
T
E
------
I
N
D
----------
N
S
W
K
D
T
L
S
Q
-
L
F
L
T
K
G
W
P
T
G
-
S
V
Y
F
K
E
-
Y
T
D
I
A
S
F
S
V
D
P
Q
LYCD
Y
N
V
V
L
M
K
-
Y
D
A
T
L
Q
L
D
-
M
S
E
L
A
D
L
--
I
L
----
N
E
W
L
C
N
-
P
M
D
I
-
T
L
Y
Y
Y
Q
Q
T
D
E
A
N
K
W
I
S
M
GS
S
C
T
I
K
V
C
P
L
N
T
Q
T
L
G
I
G
C
L
T
T
--------
D
T
A
T
-
F
E
E
V
A
T
A
E
K
L
V
I
T
D
V
----
V
D
G
V
N
H
------
K
L
D
-
V
T
T
---
A
T
-
C
T
-----
I
---
R
-
N
C
K
K
L
G
P
-
R
---
E
N
V
A
V
----------------------
I
Q
V
G
G
S
D
-
V
L
D
I
T
A
D
----------------------
P
T
----------------
T
A
P
Q
T
E
R
M
M
R
I
N
W
K
------------
K
W
W
-
Q
V
F
Y
T
V
V
D
Y
V
N
Q
I
I
Q
A
-
M
S
K
-------
26
Fugue
49.27
20%
91
- C7 -
-
5HS5
-
SARX_STAA8
A:
[2-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
L
G
-
F
Y
K
Q
Y
K
A
L
S
E
Y
I
D
K
K
----
Y
K
L
S
L
N
------
D
L
A
-
V
L
D
---
L
T
M
K
H
C
KD
E
K
V
---
L
M
Q
S
F
L
K
T
A
M
D
E
L
D
L
S
R
T
K
----------------------
L
L
V
S
-
I
R
-
R
L
I
E
K
E
-------------
R
L
--
S
K
----
V
R
----------------
S
S
K
D
E
R
K
I
Y
I
Y
L
N
N
------------
D
D
I
-
S
K
F
N
A
L
F
E
D
V
E
Q
F
L
N
I
-
L
E
H
H
------
7
PsiBlast_PDB
49.07
17%
37
- C6 -
-
2P22
-
SRN2_YEAST
C:
[48-167]
-----------------------------------------------------------------------------------------------------------------------
Q
T
H
R
H
--
Q
L
----
E
L
Y
V
T
K
-
F
N
P
L
-
T
D
F
A
G
K
I
--
H
A
F
R
-
D
Q
F
-----
K
Q
L
E
E
N
F
E
D
L
H
E
Q
K
D
K
V
Q
A
----
L
L
E
N
A
R
I
-
L
E
S
K
Y
V
A
S
W
Q
D
Y
H
S
E
----
F
S
K
K
Y
G
------
D
I
A
-
L
K
K
---
K
L
-
E
Q
----------------
N
T
-
K
K
L
D
E
E
S
S
Q
----------------------
L
E
T
T
-
T
R
-
S
I
D
S
A
D
D
L
----------
D
Q
F
--
I
K
----
N
Y
-------------------------------------------------------------------------
2
PsiBlast_PDB
47.27
26%
-21
- C5 -
-
2NMV
3
?
A:
[29-143]
----------------------------------------------------------------
Q
-
E
G
K
K
H
Q
T
L
L
G
-
A
T
G
T
G
K
-
T
F
T
V
S
N
L
I
K
E
V
N
----
K
P
T
L
V
I
A
-
H
N
K
T
L
A
G
Q
L
Y
S
E
F
K
E
F
--
F
P
----
N
N
A
V
E
Y
F
V
S
Y
Y
-
D
Y
Y
Q
P
E
A
--
Y
V
P
Q
T
D
T
F
-----
I
E
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
46.32
10%
18
- C2 -
-
3UD1
5
ANK1_HUMAN
A:
[5-326]
-----------
G
F
-
L
V
S
F
M
V
D
A
R
G
-------
G
S
M
R
G
S
RHNG
L
R
V
V
I
P
P
RTCA
A
P
T
R
I
T
C
R
L
V
K
P
Q
-
K
L
S
T
P
P
P
L
A
E
E
E
G
L
A
S
R
-
I
I
A
L
G
P
T
G
A
Q
F
L
----
S
P
V
I
V
E
I
P
H
F
A
S
H
G
R
G
-
D
R
E
L
V
V
L
--
R
S
ENGS
V
W
K
E
H
R
-
S
R
Y
G
-
E
S
Y
L
D
Q
I
--
L
N
G
M
D
E
E
L
-----
G
S
L
E
E
L
E
K
-
R
V
C
R
I
I
T
T
D
F
PL
Y
F
V
I
M
S
R
L
C
-
Q
D
Y
D
I
I
G
P
E
G
G
S
L
K
S
----
K
L
V
P
L
V
------
Q
A
T
-
F
P
E
NAV
T
K
-
R
V
-----
K
---
L
-
A
L
Q
A
Q
P
V
-
P
D
E
L
V
T
K
L
L
GNQ
A
T
F
S
P
IVTVEPRRRKFH
R
P
I
G
L
R
-
I
P
-
L
P
P
S
W
T
D
N
PRDSGEGDTS
L
R
L
--
L
C
----
S
V
IGGTD
Q
A
Q
W
E
D
ITGT
T
K
L
V
Y
A
N
E
C
A
N
F
T
T
N
------------
V
S
A
-
R
F
W
L
S
D
C
P
R
T
A
E
A
V
N
F
-
A
T
L
L
Y
-
K
E
L
-
28
Fugue
45.90
14%
83
- C6 -
-
4ZRY
-
B:
[17-120]
----------------------------------------------------------------------------------------------------------
R
-
H
G
D
S
V
R
N
S
-
K
I
E
I
S
E
L
N
R
V
I
----
Q
R
L
R
S
E
-
I
D
N
V
-
K
K
Q
I
S
N
L
--
Q
Q
S
I
S
D
A
E
-----
Q
R
G
E
N
A
L
K
D
A
K
N
K
L
N
D
L
E
D
----
A
L
Q
Q
A
K
E
-
D
L
A
R
L
L
R
D
Y
Q
E
L
M
N
T
----
K
L
A
L
D
L
------
E
I
A
-
T
Y
R
---
T
L
-
L
E
-----
G
---
E
--------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
44.76
26%
-13
- C5 -
-
3V4R
1
UVRB_BACSU
A:
[35-120]
----------------------------------------------------------------
Q
-
E
G
K
K
H
Q
T
L
L
G
-
A
T
G
T
G
K
-
T
F
T
V
S
N
L
I
K
E
V
N
----
K
P
T
L
V
I
A
-
H
N
K
T
L
A
G
Q
L
Y
S
E
F
K
E
F
--
F
P
----
N
N
A
V
E
Y
F
V
S
Y
Y
-
D
Y
Y
Q
P
E
A
--
Y
V
P
Q
T
D
T
F
-----
I
E
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.73
21%
56
- C6 -
-
4ZKT
-
?
A:
[678-798]
---------------------------------------------------------------------------------------------------------------------
W
K
E
V
Y
S
F
--
I
V
----
S
N
W
M
T
K
-
I
N
T
Q
F
N
K
R
K
E
Q
M
--
Y
Q
A
L
Q
N
Q
V
-----
N
A
I
K
T
I
I
E
S
K
Y
N
S
Y
T
L
E
E
K
------
N
E
L
T
N
-
K
Y
D
I
K
Q
I
E
N
E
L
N
Q
K
V
----
S
I
A
M
N
N
I
D
R
F
L
T
E
S
S
-
I
S
Y
---
L
M
-
K
L
-----
I
---
N
-
E
V
K
I
N
K
L
-
R
E
Y
D
E
N
V
K
T
----------------------
Y
L
L
-------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.01
21%
68
- C6 -
-
3FFZ
-
BXE_CLOBO
A:
[678-794]
---------------------------------------------------------------------------------------------------------------------
W
K
E
V
Y
S
F
--
I
V
----
S
N
W
M
T
K
-
I
N
T
Q
F
N
K
R
K
E
Q
M
--
Y
Q
A
L
Q
N
Q
V
-----
N
A
I
K
T
I
I
E
S
K
Y
N
S
Y
T
L
E
E
K
------
N
E
L
T
N
-
K
Y
D
I
K
Q
I
E
N
E
L
N
Q
K
V
----
S
I
A
M
N
N
I
D
R
F
L
T
E
S
S
-
I
S
Y
---
L
M
-
K
I
-----
I
---
N
-
E
V
K
I
N
K
L
-
R
E
Y
D
E
N
V
K
T
----------------------
Y
L
L
-------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
42.22
26%
-26
- C5 -
-
2D7D
2
UVRB_BACSU
A:
[29-143]
----------------------------------------------------------------
Q
-
E
G
K
K
H
Q
T
L
L
G
-
A
T
G
T
G
K
-
T
F
T
V
S
N
L
I
K
E
V
N
----
K
P
T
L
V
I
A
-
H
N
K
T
L
A
G
Q
L
Y
S
E
F
K
E
F
--
F
P
----
N
N
A
V
E
Y
F
V
S
Y
Y
-
D
Y
Y
Q
P
E
A
--
Y
V
P
Q
T
D
T
F
-----
I
E
K
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
41.71
17%
32
* C6 *
-
5J0H
-
?
A:
[7-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
E
L
R
R
A
L
E
E
L
E
K
----
A
L
R
E
L
K
K
-
S
L
D
E
L
E
R
S
L
E
E
L
E
K
N
PS
E
D
A
L
V
E
N
N
------
R
L
N
-
V
E
N
---
N
K
-
I
I
-----
V
---
E
-
V
L
R
I
I
A
E
-
V
L
K
I
N
A
K
S
---------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
40.90
24%
93
* C4 *
-
2WZF
1
?
A:
[292-382]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
T
D
I
I
A
Y
S
N
D
K
R
---
T
Q
K
----
M
M
D
T
V
A
R
Y
L
K
N
I
Y
D
D
P
Y
T
A
L
K
D
T
----
P
L
A
Q
T
A
------
F
F
N
K
C
Q
E
---
E
R
-
K
S
-----
I
---
F
-
D
L
R
K
G
L
Q
-
D
A
F
R
S
D
S
L
L
----------------------
Q
L
Y
D
-
F
L
-
G
A
D
K
F
K
E
V
----------
F
K
L
-----------------------------------------------------------------------------------
12
PsiBlast_PDB
33.53
22%
31
- C5 -
-
5U0C
-
POLG_ZIKV
A:
[362-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
E
V
L
----------------------
E
M
Q
D
-
L
W
-
L
L
R
K
P
E
K
V
----------
T
R
W
--
L
Q
----
S
N
----------------
G
W
D
R
L
K
R
M
A
V
S
G
D
D
------------
C
V
V
-
K
P
I
D
D
R
F
A
H
A
L
R
F
L
N
D
-
M
G
K
V
R
-
K
---
18
HHSearch
32.78
67%
-110
- C1 -
-
3HE5
-
?
B:
[-1-8]
--------------------------------------------------------------------------------------------------------------------------------------------
S
A
R
-
N
A
Y
L
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
31.32
22%
32
- C5 -
-
5TMH
-
POLG_ZIKV
A:
[626-693]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
E
V
L
----------------------
E
M
Q
D
-
L
W
-
L
L
R
K
P
E
K
V
----------
T
R
W
--
L
Q
----
S
N
----------------
G
W
D
R
L
K
R
M
A
V
S
G
D
D
------------
C
V
V
-
K
P
I
D
D
R
F
A
H
A
L
R
F
L
N
D
-
M
G
K
V
R
-
K
---
11
PsiBlast_PDB
30.61
22%
42
* C5 *
-
5U0B
-
POLG_ZIKV
A:
[626-691]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
E
V
L
----------------------
E
M
Q
D
-
L
W
-
L
L
R
K
P
E
K
V
----------
T
R
W
--
L
Q
----
S
N
----------------
G
W
D
R
L
K
R
M
A
V
S
G
D
D
------------
C
V
V
-
K
P
I
D
D
R
F
A
H
A
L
R
F
L
N
D
-
M
G
K
V
R
-
K
---
6
PsiBlast_PDB
30.43
30%
69
- C6 -
-
5TKY
-
SSB1_CHATD
A:
[526-604]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
E
K
----
M
I
S
D
-----
A
E
K
F
K
S
K
C
E
A
F
S
K
R
----
F
E
A
K
Q
Q
------
L
E
S
-
Y
I
S
---
R
V
-
E
E
-----
I
I
S
D--------
K
-
D
K
I
E
Q
A
L
S
E
----------------------
A
M
A
Q
-
L
E
-
I
E
D
S
T
A
D
E
----------
L
K
------------------------------------------------------------------------------------
5
PsiBlast_PDB
29.10
22%
40
- C5 -
-
5TFR
-
POLG_ZIKV
A:
[630-695]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
E
V
L
----------------------
E
M
Q
D
-
L
W
-
L
L
R
K
P
E
K
V
----------
T
R
W
--
L
Q
----
S
N
----------------
G
W
D
R
L
K
R
M
A
V
S
G
D
D
------------
C
V
V
-
K
P
I
D
D
R
F
A
H
A
L
R
F
L
N
D
-
M
G
K
V
R
-
K
---