@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMD6: (2017-11-07 )
MNSFMQQSLKMKKILMMSMCGALLLTGCNKTSQQDQTVSKEQKSTAQKTTEQRDSSCLQIMVAMHTINQNSKIEDLNQINEKLKTCVPSLKSEEQLKLIEASTAMYQRFLKQDYTDKTARAFEAFGYAVLEQKQDLKKVIQSQKKLFAQLSPRDQYLLQHEGQAYIELLYQGEGMFTYRRQPNYLIDVFSKALPADQKEFLSRMAKDNQDIFYNDGALAVSWKELTERALFWEKFIQKYPKSYFINDAKLLFNEYRYFIFFGLDNTPVSNEYAPNTWFDPDALQQIRFLSTQSQSSLAKPAQKFLKFIATPVDERNKQFKIDLTDENGQKKSTYQIVHEQLEQLLKFDSPWNTEIYRDCHIDAVCIDTN
Atome Classification :
(20 SA)
-------------------------------------------------.........10........20........30.-----....-----...40.........50..----......-----60.....--------------.-------..70........80-------.........90........100..-----.....110......------.-------120..---..--...130.....---..140---.---.---------.----....150...------..------------------..160-------------........170.......180....-----..-----.--190......--...200..---.....----------------210----.......220.--....----..230.......240.---------.....--.-----------------..250--....----.------..----------.260-----.-.....--..270..-----------....-.280....-...290....--...300------........------.310.-----..-....320.......--.-----330--------..-----..-....-----.340.......350........360-----------.........-------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------M
N
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K
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KFDSP-WNT
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DCH-------------
I
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C
IDTN-------------------------------------------
28
Fugue
53.91
10%
29
- C4 -
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2BVY
2
?
A:
[5-467]
---------------------------------------------TIAI
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A-------------------------------
21
Fugue
53.87
16%
23
- C4 -
-
4Z0V
6
PDE12_HUMAN
A:
[7-440]
-------------------------------------------------
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K-----------------------------------------
29
Fugue
47.96
16%
24
- C3 -
-
5JK0
4
XERH_HELPY
A:
[2-363]
--------------------------------------------------
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26
Fugue
43.34
23%
-138
* C5 *
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2MN4
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?
A:
[1-94]
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24
Fugue
42.60
16%
-19
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5JRC
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A:
[34-219]
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----------------------------------------------------------------------------
22
Fugue
40.45
11%
36
* C4 *
-
2G3F
1
HUTI_BACSU
A:
[2-415]
---------------------------------PKQID
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S
----
T
------
Y
A
----------
R
A
R
------
A
-
M
I
D
E
G
--
V
C
V
S
L
A
T
-----------
D
F
N
P
-
G
S
S
P
T
E
N
I
-
Q
L
I
M
S
I
A
A
L
H
--
L
K
M
T
--------
A
E
E
I
W
H
A
V
------
T
V
N
A
A
-----
Y
------
A
-
I
G
K
G
E
E
A
G
QL
K
-----
A
----------
G
R
-----
S
A
-
D
L
V
I
-----
W
Q
A
P
N
Y
M
Y
I
P
Y
H
-
Y
G
V
N
H
V
H
Q
V
M
-------------
K
N
G
T
I
V
V
N
R
-------------------------------------------
27
Fugue
34.60
11%
49
- C2 -
-
3ZRH
2
ZRAN1_HUMAN
A:
[2-449]
-------------------------------------------LEVD
F
K
K
L
K
Q
I
K
N
R
M
K
K
T
D
W
L
F
L
N
A
C
V
G
V
V
E
G
D
L
A
A
I
E
-----
A
Y
K
S
-----
S
G
G
D
I
A
R
Q
L
T
A
D
E
V
R
L
L
N
----
R
P
S
A
F
D
VGYT
L
V
H
L
A
I
R
F
--------------
Q
-------
R
Q
D
M
L
A
I
L
L
T
E
V
S
--------
Q
Q
A
A
K
C
I
P
A
M
V
C
P
E
L
T
E
Q
I
R
R
E
I
A
-----
A
S
L
H
Q
R
K
G
D
F
A
C
Y
F
------
L
-------
T
D
L
V
T
---
F
T
L
P
A
D
I
E
D
L
P
P
T
V
Q
---
E
K
L
F
D
---
E
VLD
R
---------
D
----
V
Q
K
E
L
E
E
E
S
P
------
I
I
NWSLELATRLDS
R
L
Y
A
L
W
N
R
T
A
--------------
G
D
C
L
L
D
S
V
L
Q
A
--
T
W
G
I
Y
D
K
D
S
V
L
R
-----
K
A
-----
L
--
H
--
D
S
L
H
D
C
--
S
H
W
F
Y
T
R
W
---
K
D
W
E
S
----------------
W
Y
S
----
Q
S
F
G
-
L
H
F
S
L
R
--
E
E
Q
W
----
Q
E
D
W
A
F
I
L
S
L
A
S
Q
--
P
---------
G
A
S
L
E
--
Q
-----------------
T
H
I
F
---
V
L
A
H
I
L
R-
R
------
P
I
----------
I
V
Y
G
V
KYYK
T
-
L
G
Y
T
R
--
F
Q
G
V
Y
L
P
-----------
L
L
W
E
-
Q
S
F
C
W
K
S
P
-
I
A
L
G
Y
T
R
-------------------
G
H
F
S
A
L
------
V
A
M
E
N
-----
D
D
-
V
T
I
T
F
-
L
P
L
V
D
S
E
R
--
K
-----
L
LHVHFLSAQE
L
G
-----
N
E
-
E
Q
Q
E
-----
K
L
L
R
E
W
L
D
C
C
V
T
-
E
G
G
V
L
V
A
M
Q
K
-------------
S
S
R
R
R
N
H
P
L
V
T
Q
M
V
E
K
W
L
D
R
Y
R
Q
IRP--------------------------
25
Fugue
31.60
9%
-20
- C5 -
-
1FT1
-
FNTA_RAT
A:
[55-369]
------------------------------------------------------
F
L
S
L
D
S
P
T
Y
V
L
Y
R
D
R
A
E
W
-------
A
D
-----
I
D
P
V
-----
P
Q
N
D
-
G
P
S
P
V
V
Q
I
I
Y
S
E
K
----
F
R
D
V
Y
D
-----
Y
F
R
A
V
L
Q
--------------
R
-------
D
E
R
S
------------------------------------
E
R
A
F
K
-----
L
T
R
D
A
I
E
L
N
A
A
N
--------
Y
-------
T
V
W
H
F
---
R
R
--
V
L
L
R
S
L
Q
K
D
L
Q
---
E
E
M
N
Y
---
I
---
I
---------
A
----
I
I
E
E
-
Q
P
K
N
Y
------
Q
V
------------------
W
H
H
R
--------------
R
V
L
V
E
W
L
-----------
K
D
P
S
Q
E
L
-----
E
F
-----
I
--
A
--
D
I
L
N
Q
D
--------------
A
K
N
Y
----------------
H
A
W
----
Q
H
R
Q
W
V
I
Q
E
F
R
--
L
W
D
N
----
E
L
Q
Y
V
D
Q
L
L
K
E
D
V
RN
N
---------
S
V
W
N
Q
--
R
-----------------
H
F
V
I
S
N
-
T
T
G
Y
----
S
------
D
R
----------
A
V
L
------
E
-
R
E
V
Q
Y
--
T
L
E
M
I
K
L
-----------
V
P
H
N
-
E
S
A
W
N
Y
L
K
-
G
I
L
Q
D
R
G
L
S
R
--
Y
P
N
L
--------
L
N
Q
L
L
D
L
Q
------
P
S
H
S
S
-----
P
Y
-
L
I
A
F
L
-
V
D
I
Y
E
D
M
L
--
E
N
QCDN
K
----------
E
D
-----
I
L
-
N
K
A
L
-----
E
L
C
E
I
L
A
K
E
K
D
T
-
I
R
K
E
Y
W
R
Y
I
G
-------------
R
S
L
Q
S
K
H
S
R
-------------------------------------------
30
Fugue
31.52
10%
53
- C1 -
-
3L2P
4
DNLI3_HUMAN
A:
[1-579]
HMRHKDCL
L
R
E
F
R
K
L
C
A
M
V
A
D
N
PS
Y
N
T
K
T
Q
I
I
Q
D
F
L
R
KGGD
V
Y
L
T
V
K
L
L
L
P
G
V
I
K
T
V
Y
N
L
N
D
K
Q
I
V
K
L
F
S
R
I
F
N
C
N
P
D
D
M
A
-----
R
D
L
E
QGD
V
S
E
T
I
R
-
V
F
F
E
Q
S
K
S
F
P
P
A
A
----
K
S
L
-
L
T
-----
I
Q
E
V
D
E
F
--------------
L
-------
L
R
L
S
K
L
T
K
E
D
E
Q
Q
--------
Q
A
L
Q
D
I
A
S
R
C
T
A
N
D
L
K
C
I
I
R
L
I
K
H
DLKMN
S
G
A
K
H
V
L
D
A
L
D
P
N
A
------
Y
-------
E
A
F
K
A
S
RN
L
Q
--
D
V
V
E
R
V
L
H
N
A
Q
---
E
V
E
L
S
---
V
---
Q
A
S
L
MTPVQ
P
M
----
L
A
E
A
C
K
S
V
E
Y
------
A
M
------------------
K
K
C
P
--------------
N
G
M
F
S
E
I
K
Y
D
G
E
R
V
Q
V
H
K
N
G
D
H
F
S
Y
F
S
RSL
K
P
-----
V
--
L
--
P
H
K
V
A
H
--
F
K
D
Y
I
P
Q
A
---
F
P
G
G
H
----------------
S
M
I
----
L
D
S
E
V
L
L
I
D
N
K
TG
K
P
L
P
----
F
G
T
L
G
V
H
K
K
A
A
F
Q
--
D
A
N
V
C
L
F
V
FD
C
I
Y
F
N
--
D
-----------------
V
S
L
M
DRP
L
C
E
R
----
R
------
K
F
----------
L
H
D
------
N
-
M
V
E
I
P
--
N
R
I
M
F
S
E
-----------
M
K
R
V
T
K
A
L
D
L
A
D
M
-
I
T
R
V
I
Q
E
G
L
E
G
L
V
L
K
D
VKGTYEPG
K
R
H
W
L
K
V
K
------
K
D
Y
L
N
-----
M
A
-
D
T
A
D
L
-
V
V
L
G
A
F
Y
G
--
Q
-----
G
----------
S
K
GGMMS
I
F
-
L
M
G
C
Y
D
PGS
Q
K
W
C
T
V
T
K
C
A
G
G
-
H
D
D
A
T
L
A
R
L
Q
NELDMVKISKA
A
V
W
E
I
T
G
A
E
F
S
K
S
EAHTADG
I
S
I
R
F
P
R
C
T
R
IRDDKDWKSATN
L
P
Q
L
K
E
L
Y
Q
L
S
K
4
PsiBlast_PDB
29.03
25%
-17
- C6 -
-
4AI7
6
?
A:
[173-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
28.71
25%
-21
- C6 -
-
5AFA
6
?
A:
[173-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
28.58
25%
-18
* C6 *
-
5K15
4
?
A:
[173-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
28.40
25%
-20
- C6 -
-
2XVB
6
?
A:
[173-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
28.36
25%
-18
- C6 -
-
5G3E
5
?
A:
[173-263]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
28.28
25%
-17
- C6 -
-
2YAE
6
?
A:
[173-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
28.26
25%
-18
- C6 -
-
2YAP
6
?
A:
[173-263]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
28.18
25%
-20
- C6 -
-
2YAR
5
?
A:
[173-264]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
28.18
25%
-17
- C6 -
-
2YAQ
6
?
A:
[173-264]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
28.17
25%
-18
- C6 -
-
5G3B
6
?
A:
[173-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
27.94
25%
-18
- C6 -
-
2XU9
6
?
A:
[173-261]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
K
E
G
D
L
V
L
V
N
--------
G
A
L
R
P
T
L
V
A
Q
K
A
T
L
R
L
R
L
L
N
A
S
N
A
-----
R
Y
Y
R
L
A
L
Q
D
H
P
L
Y
L
------
I
-------
A
A
D
G
G
---
F
------
L
E
E
P
L
E
V
S
---
E
L
L
L
A
PG
E
R
---
A
---------
E
----
V
L
V
R
L
R
K
E
G
R
------
F
L
------------------
L
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------