@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN01: (2017-11-11 )
MTESFAALFEESELNLNVEKGAVIQGVVVNIDSDWVTVDTGLKSEGIVDRAEFLNEQRELEVQVGDTVDVVVEALDNGMGQTVLSREKAKRAETWTKLEKIFEDGEIVTGVISGKVKGGFTVDIGPVRAFLPGSLVDTRPIRDTTHLEGKELEFKVIKLDAKRNNVVVSRRAVMEAESSADREALLAQLEEGQTVTGTIKNLTDYGAFVDLGGIDGLLHITDMAWKRIKHPSEVVEVGQEVTVKVLKFDRERNRVSLGLKQLGEDPWLAIMSRYPKGSIVKARVTNLTDYGCFAEIAEGVEGLVHVSEMDHTNKNIHPSKVVQIGDEVDVMVLEVDEERRRISLGIKQTRANPWEEFAKSHEKGEKVSGTIKSITDFGIFIGLNGGIDGLVHLSDISWNEQGEEAIRRYKKGDTVEAVILSVDAEGNRISLGIKQLNSDPFNDFLAANERGALVKGTVTAVDARGATVKLADEVEATLKASEINRDRVEDATKFLEVGQEVEAKIINVDRKSRSINLSIKAKDEAEEKEAVANLRTASASQDNGPKTIGDLIKAQMK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210-.......220.......230.......240.......250.......260.......270........280.......290.......300.......310.......320.......330.......340.......350.......-.360.......370.......380.......390.......400.......410.......420.......430.......440.........450.......460.......470.......480.......490.......500.......510.......520.......530...------....540.......550.....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
T
E
S
F
A
A
L
F
EESEL
N
L
NVEKG
A
V
I
Q
G
V
V
V
NIDS
D
W
V
T
VDTGLKSEGI
V
D
R
A
E
F
L
N
E
Q
R
E
L
E
V
QVG
D
T
V
D
V
V
V
E
A
L
DNGMG
Q
T
V
L
S
R
E
K
A
K
R
A
E
T
W
T
K
L
E
K
I
F
EDG
E
I
V
T
G
V
ISGKVKG
G
F
T
V
DI
G
P
V
R
A
FLPGSLVDTRPIRDTTHLEGK
E
L
E
F
K
V
I
K
L
DAKRN
N
V
V
V
S
R
R
A
V
MEAESSA
D
R
E
A
L
L
A
Q
L
EEG
Q
T
V
T
G
TIKNLTDYG
A
F
V
DLG-GID
G
L
L
H
I
T
D
M
A
W
K
RIK
H
P
S
E
V
V
E
V
G
Q
E
V
T
V
K
V
L
KFDRER
N
R
V
S
L
G
L
K
QLGE
D
P
W
L
A
I
M
-
S
RYPKG
S
I
V
K
A
R
VTNLTDY
G
C
F
A
E
I
A
E
G
V
E
G
L
V
H
V
S
EMDHTNKNI
H
P
S
K
V
V
QIGDEV
D
V
M
V
L
EVDEER
R
R
I
SLGIKQTR-AN
P
W
E
E
F
A
-
K
S
HEKGEKVS
G
T
I
K
SITD
F
G
I
F
I
GLNGGI
D
G
L
V
H
LSDISW
N
E
Q
G
E
E
A
I
R
R
YKKGD
T
V
E
A
V
I
L
S
VDAEG
N
R
I
S
L
G
I
K
QLNSDP--
F
N
D
F
LAANERG
A
L
V
K
G
T
V
T
A
VDARG
A
T
V
K
L
A
D
E
V
E
A
T
L
K
A
S
EI
N
R
D
R
V
E
D
A
T
K
F
L
E
V
G
Q
E
V
E
A
K
I
I
N
VDRKS
R
S
I
N
L
S
I
K
AKD
E
A
E
E
K
E
A
V
A
N
LR------TASASQDNGP
K
T
I
G
D
L
I
K
A
QMK
22
HHSearch
79.77
70%
-119
- C2 -
-
4Q7J
-
RS1_ECOLI
D:
[3-179]
--
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
D
G
F
G
E
T
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
V
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
79.77
70%
-119
- C2 -
-
4Q7J
-
RS1_ECOLI
D:
[3-179]
--
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
D
G
F
G
E
T
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
V
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
78.56
66%
-119
- C2 -
-
4Q7J
-
RS1_ECOLI
D:
[3-179]
--
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
D
G
F
G
E
T
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
V
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
74.31
66%
-
- C2 -
-
4R71
-
RS1_ECOLI
E:
[2-171]
-
T
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
------
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
--------
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
59.28
77%
-114
- C2 -
-
2MFL
-
?
A:
[87-179]
--------------------------------------------------------------------------------------
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
V
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.38
66%
-114
- C2 -
-
2MFL
-
?
A:
[87-179]
--------------------------------------------------------------------------------------
E
K
A
K
R
H
E
A
W
I
T
L
E
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
V
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.44
73%
-86
- C2 -
-
2KHI
-
RS1_ECOLI
A:
[267-361]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
A
I
A
-
K
R
Y
P
E
G
T
K
L
T
G
R
V
T
N
L
T
D
Y
G
C
F
V
E
I
E
E
G
V
E
G
L
V
H
V
S
E
M
D
W
T
N
K
N
I
H
P
S
K
V
V
N
V
G
D
V
V
E
V
M
V
L
D
I
D
E
E
R
R
R
I
S
L
G
L
K
Q
C
K
-
A
N
P
W
Q
Q
F
A
-
E
T
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
50.86
72%
-86
- C2 -
-
2KHI
-
RS1_ECOLI
A:
[267-358]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
A
I
A
-
K
R
Y
P
E
G
T
K
L
T
G
R
V
T
N
L
T
D
Y
G
C
F
V
E
I
E
E
G
V
E
G
L
V
H
V
S
E
M
D
W
T
N
K
N
I
H
P
S
K
V
V
N
V
G
D
V
V
E
V
M
V
L
D
I
D
E
E
R
R
R
I
S
L
G
L
K
Q
C
K
-
A
N
P
W
Q
Q
F
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
50.51
45%
-131
- C2 -
-
4NNG
-
RS1_MYCTU
A:
[294-373]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
V
A
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
V
E
V
-
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
-
E
D
Y
T
E
E
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
49.46
45%
-120
- C2 -
-
4NNI
2
B:
[17-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
V
E
V
-
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
-
E
D
Y
T
E
E
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
49.04
53%
-153
- C2 -
-
2MFI
-
?
A:
[9-100]
--------
F
T
E
S
L
K
E
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
D
G
F
G
E
T
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
48.48
44%
-151
- C2 -
-
5IE8
-
RS1_MYCLE
A:
[281-365]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
P
W
R
H
F
A
-
R
T
H
A
I
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
V
E
V
-
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
47.76
44%
-18
- C2 -
-
3BZK
-
?
A:
[649-724]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
D
L
K
P
G
M
V
L
E
G
V
V
T
N
V
T
N
F
G
A
F
V
D
I
G
V
H
Q
D
G
L
V
H
I
S
A
L
S
E
K
F
V
K
D
P
Y
E
V
V
K
A
G
D
I
V
K
V
K
V
M
E
V
D
I
P
R
N
R
V
G
L
S
M
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
47.63
45%
-118
- C2 -
-
4NNI
2
RS1_MYCTU
A:
[17-96]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
V
E
V
-
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
-
E
D
Y
T
E
E
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.51
46%
-148
- C2 -
-
4NNH
-
RS1_MYCS2
A:
[294-376]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Q
I
V
P
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
S
E
R
---
V
-
P
D
Q
V
V
Q
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
-
E
D
Y
T
E
E
F
D
-
P
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
47.46
33%
2
- C2 -
-
4NNG
-
RS1_MYCTU
A:
[284-413]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
H
F
A
R
T
H
A
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
E
D
Y
T
E
E
F
D
P
A
K
Y
G
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
G
F
D
A
E
T
N
E
W
L
E
G
F
E
K
Q
R
A
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
46.73
31%
-100
- C2 -
-
4NNG
-
RS1_MYCTU
A:
[281-413]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
H
M
R
H
F
A
-
R
T
H
A
I
G
Q
I
V
A
G
K
V
T
K
L
V
P
F
G
A
F
V
R
V
E
E
G
I
E
G
L
V
H
I
S
E
L
A
E
R
H
-
V
E
V
P
D
Q
V
V
A
V
G
D
D
A
M
V
K
V
I
D
I
D
L
E
R
R
R
I
S
L
S
L
K
Q
A
N
-
E
D
Y
T
E
E
F
D
P
A
K
Y
G
M
A
D
S
Y
D
E
Q
G
N
Y
I
F
P
E
G
F
D
A
E
T
N
E
W
L
E
G
F
E
K
Q
R
A
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
46.14
22%
-14
- C2 -
-
4Q7J
-
RS1_ECOLI
D:
[7-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
F
E
E
S
L
K
E
---
I
E
T
R
P
G
S
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
----
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
A
V
E
D
G
F
G
E
T
L
L
S
R
E
K
A
K
R
H
E
A
W
I
T
L
E
-
K
A
Y
E
D
A
E
T
V
T
G
V
I
N
G
K
V
K
G
G
F
T
V
E
L
N
-
G
I
R
A
F
L
P
G
S
L
V
D
V
R
P
-
V
--
R
D
T
L
H
L
E
G
K
E
L
E
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
NS---------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
45.83
52%
-150
- C2 -
-
4TOI
-
?
A:
[245-314]
--
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
E
T
R
---
I
V
R
G
V
V
V
A
I
D
K
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
N
A
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
45.57
33%
-91
- C2 -
-
2K4K
-
GS13_BACSU
A:
[3-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
F
E
V
G
S
V
Y
T
G
K
V
T
G
L
Q
A
Y
G
A
F
V
A
L
D
E
E
T
Q
G
L
V
H
I
S
E
V
T
H
G
F
V
K
D
I
N
E
H
L
S
V
G
D
E
V
Q
V
K
V
L
A
V
D
E
E
K
G
K
I
S
L
S
I
R
A
T
Q
A
A
P
E
K
K
E
S
K
P
R
K
PKAAQV
S
E
E
A
S
T
P
Q
G
F
N
T
L
K
D
K
L
E
E
W
I
E