@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNN1: (2017-11-17 )
MQSGGFLVMCPFCGRSKGGLVCGYCGWVSKDKKFRFVVVKNG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10...--.-------.-------------.----------..20........30.....------...40.---------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQSG
G
F
L
V
-MCPFCG--R-------S-------------K----------G
G
L
V
C
G
YCGWVSKD
K
K
F
R
F
------
V
V
V
KNG---------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
69.85
37%
-175
* C4 *
-
1WII
-
ELOF1_MOUSE
A:
[24-54]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
T
C
P
F
C
N
--
H
-------
E
KS
C
D
V
K
M
D
RARN-
T
----------
G
V
I
S
C
T
V
C
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
69.43
41%
-42
- C4 -
-
4V1N
-
TF2B_YEAST
M:
[22-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
C
P
E
C
K
--
V
-------
Y
PPKIVERFS----
E
----------
G
D
V
V
C
A
L
C
G
L
V
L
S
D
K
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
69.29
41%
-22
- C4 -
-
4BBR
-
TF2B_YEAST
M:
[22-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
C
P
E
C
K
--
V
-------
Y
PPKIVERFS----
E
----------
G
D
V
V
C
A
L
C
G
L
V
L
S
D
K
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
67.50
32%
0
- C- -
-
3G4S
-
RL37A_HALMA
Z:
[27-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
H
-
A
C
P
N
C
G
--
E
-------
D
-------------
R
VDRQGT----
G
I
W
Q
C
S
Y
C
D
Y
K
F
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
63.08
36%
0
- C- -
-
1VQ8
-
RL37A_HALMA
Z:
[28-55]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-
A
C
P
N
C
G
--
E
-------
D
R
V
D
R
QG-------
T
----------
G
I
W
Q
C
S
Y
C
D
Y
K
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
61.91
58%
-197
- C3 -
-
1KK2
-
IF2G_PYRAB
A:
[60-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
G
--
R
-------
Y
-------------
S
----------
T
S
P
V
C
P
Y
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
60.50
35%
-253
- C4 -
-
3PWF
-
?
B:
[139-161]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-
I
C
P
I
C
G
--
Y
-------
T
-------------
A
VDE-------
A
P
E
Y
C
P
V
C
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.16
58%
-155
- C3 -
-
1KK3
-
IF2G_PYRAB
A:
[60-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
G
--
R
-------
Y
-------------
S
----------
T
S
P
V
C
P
Y
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
59.86
32%
-30
- C4 -
-
1PFT
-
TF2B_PYRFU
A:
[5-39]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
-
V
C
P
A
C
E
--
S
A
E
L
I
Y
D
P
E
-------------
R
----------
G
E
I
V
C
A
K
C
G
Y
V
I
E
E
N
I
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
59.41
58%
-138
- C3 -
-
1KJZ
-
IF2G_PYRAB
A:
[60-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
G
--
R
-------
Y
-------------
S
----------
T
S
P
V
C
P
Y
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.13
58%
-148
- C3 -
-
1KK1
-
IF2G_PYRAB
A:
[60-82]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
G
--
R
-------
Y
-------------
S
----------
T
S
P
V
C
P
Y
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.55
58%
-133
- C3 -
-
1KK0
-
IF2G_PYRAB
A:
[60-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
N
C
G
--
R
-------
Y
-------------
S
----------
T
S
P
V
C
P
Y
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
54.96
36%
-10
- C2 -
-
3MJH
-
?
B:
[1-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
S
E
G
F
I
---
C
P
Q
C
M
--
K
-------
S
-------------
L
----------
G
----------
S
A
D
E
L
F
K
H
------
Y
E
A
V
H
D
AGND-----------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
53.94
38%
-95
- C5 -
-
5JB3
-
RS27A_PYRFU
Y:
[20-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
F
C
P
R
C
G
--
P
-------
G
VFMADH-------
G
----------
D
R
W
A
C
G
K
C
G
Y
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
53.18
38%
-95
* C5 *
-
5JBH
-
RS27A_PYRFU
Y:
[20-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
F
C
P
R
C
G
--
P
-------
G
VFMADH-------
G
----------
D
R
W
A
C
G
K
C
G
Y
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
53.00
26%
-61
- C1 -
-
4EWV
2
GH312_ARATH
A:
[14-581]
N
E
T
F
E
K
Q
L
K
D
L
TSNVK
S
I
Q
D
N
L
L
E
E
I
I
TPD
K
E
L
F
K
K
N
VSYEDI
K
P
Y
L
D
R
VVNGESQKMMPWNNKYLDN
L
T
F
I
Y
D
L
R
M
Q
V
I
T
K
H
V
KGVEM
M
F
L
F
T
K
QEPARVAT
S
S
Y
F
K
S
D
Y
F
K
N
RPSNWYYSYTSP
D
E
V
I
L
CPN
N
T
E
S
L
Y
C
H
L
L
C
G
L
V
QRGSIF
A
S
V
M
V
R
A
I
E
V
L
K
N
S
W
E
E
L
C
S
N
I
R
S
GHLSNWVTD
L
G
C
Q
N
S
V
S
L
V
L
GGPR
P
E
L
A
D
T
I
E
E
I
C
N
QNSWKG
I
V
K
R
L
WPNTK
Y
I
E
T
VVTGSMGQY
V
P
M
L
N
Y
Y
C
ND
L
P
L
V
S
T
TYGSSETTFGINLDPLCKPED
V
S
Y
T
F
M
PN
M
S
Y
F
E
F
-
I
-
G
C
T
Y
A
G
LY
R
-------
M
-------------
R
----------
V
G
D
I
V
L
V
T
G
F
Y
N
N
A
P
Q
F
K
F
------
V
R
R
E
N
V
V
L
S
I
D
S
D
K
T
N
E
E
D
L
F
K
A
V
S
Q
A
K
L
V
L
E
S
S
GLDLK
D
F
T
S
Y
A
D
TSTFP
G
H
Y
V
V
Y
L
E
V
D
TKQFELD
E
E
A
L
S
T
C
C
L
V
M
E
E
S
LD
N
V
Y
K
R
C
R
FKDGSIG
P
L
E
I
R
V
V
R
Q
G
T
F
D
S
L
M
D
F
F
I
S
Q
GASTGQ
Y
K
T
P
RCIKSGKA
L
Q
V
L
E
T
C
VV
A
K
F
F
S
I
40
Fugue
52.96
22%
-129
- C2 -
-
2EPR
-
A:
[1-48]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
--------
G
--
R
-------
T
-------------
R
----------
K
Q
V
A
C
E
I
C
G
K
I
F
R
D
V
Y
H
L
N
------
R
H
K
L
S
H
SGEKPYSS
G
P
S
S
G--------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
51.12
24%
-124
- C3 -
-
1VD4
-
A:
[11-48]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
A
S
F
-
K
C
P
V
C
S
--
S
-------
T
F
T
D
L
E
A
N
Q
L
FDPM
T
----------
G
T
F
R
C
T
F
C
H
T
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
50.84
38%
-27
- C3 -
-
2DS5
1
CLPX_ECOLI
B:
[10-40]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
-
Y
C
S
F
C
G
--
K
-------
S
-------------
Q
HEVR
K
L
I
A
G
P
S
V
Y
I
C
D
E
C
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
49.55
31%
-29
- C2 -
-
1H7D
-
HEM0_MOUSE
A:
[1-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
A
A
A
M
L
L
R
S
C
P
V
L
S
--
Q
-------
G
-------------
P
----------
T
G
L
L
----
G
K
V
A
K
T
Y
Q
F
L
F
SIGRCP
I
L
A
T
Q
G
PTCS-----------------------------------------------------------------------------------------------------------------------------------------------