@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VNQ1: (2017-11-17 )
MSNFVFKRGDTFNLNLQLVDMDETLQYPPDDVRRAIDLTRYTFTSQVKTLEGAAVATFTCAALNQRTQKGWLNVKSAASTATWPLGLCQMDIKAVVGGVVQHTETLVFQVIDGVTA
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......-----.20.---.......-----------30....---....---40....-----....50........60.-....-...70-...--.....---.---80--....-----..--...-----------90...---.-..--..100.------------......110....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSN
F
V
FKRG
D
T
F
N
L
N
L
Q
L
-----
V
D
M
D
---
E
TLQY
P
P
-----------
D
D
V
R
R
A
---
I
D
LT---
R
Y
T
FTS-----QVKTLEG
A
A
V
A
T
F
T
C
A
A
-
L
NQR-TQKG--
W
L
N
--
V
KSAA---S---T---ATWP-----
L
G
--
L
C
Q
-----------
M
D
I
K
A
---
V
-
V
G
--
G
V
V
Q
H
T
------------
E
T
L
V
F
Q
V
IDGVTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
64.26
27%
5
- C1 -
-
5JSD
13
?
A:
[172-719]
QTQ
Y
Y
L
K
Y
F
NPE
I
V
Y
P
KN
A
R
I
M
L
DNG
D
I
V
R
S
TVVNNTSNPNVDMTGWVKVSSVSQIFDETYNIT
Q
S
V
I
N
G
NLITVDNFGAKGDGVTDD
S
A
A
F
Q
A
Y
C
D
SALTGQ
N
L
Y
L
G
AKGRYILKNQVDLKG
K
G
L
V
G
NGCGKVS
E
F
Y
Y
N
L
G
C
I
D
V
DGSSPDLQGKTAFINCGPTIQN
L
T
A
R
C
S
NGAGKQVS
F
I
E
I
D
G
Y
L
A
N
I
D
H
I
T
L
I
N
FYNQ
I
V
V
K
QALVGFNFTN
A
W
L
Y
YSQNAGIYCED
P
L
N
R
V
S
T
T
G
T
F
H
N
I
Y
F
Q
L
-----
G
D
-
G
---
H
A
M
I
F
D
R
------------
D
V
H
G
C
----
D
F
D
---
N
I
I
F
E
S
MNGGI
K
A
R
T
V
A
H
C
G
F
G
K
F
W
C
E
N
-
L
K
T
A
-
T
S
K
D
--
W
L
E
--
V
T
G
A
N
---
S
-------------------------------------------------
C
Y
G
N
S
------------
F
T
G
Y
V
K
L
L
G
G
W
T
S
KTSPT
L
D
S
L
PTNNY
G
G
V
S
V
S
AE
G
I
S
I
V
N
AGNK
A
K
M
L
M
L
PS
G
F
K
T
GNA
T
I
D
E
T
H
ISSSTV
T
P
L
V
K
R
R
V
IGADSSG
A
Q
Y
L
A
S
D
T
Y
T
KL
S
R
K
W
G
T
Y
N
HGSN
N
A
G
A
F
Y
A
P
M
M
L
T
Y
D
QSFSTPQNNNG
W
K
I
V
K
ESTGVYRVERVSGNT
S
V
I
T
N
G
H
I
V
V
G
S
P
LMGSRLGTG
T
G
A
T
H
G
I
Q
M
I
E
TYAGSWTSYTEAA
G
F
K
V
F
W
R
D
SSN
A
L
V
D
P
H
R
F
T
V
A
F
T
ATS
29
Fugue
62.56
23%
-55
* C2 *
-
3IU3
1
IL2RA_HUMAN
I:
[1-158]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
-----
C
D
D
D
--------
P
P
-----------
E
I
P
H
A
T
---
F
K
A
M
---
A
Y
K
E
G
T
-----
M
L
N
---------
C
E
C
K
R
-
G
F
R
R
-
I
K
S
G
SL
Y
M
L
--
C
T
G
N
S
---
S
---
H
---
S
S
W
D
NQCQC
P
G
--
H
C
R
EPPPWENEATE
R
I
Y
H
F
---
V
-
V
G
--
Q
M
V
Y
Y
Q
CVQGYRALHRGP
A
E
S
V
C
K
M
T
H
G
K
T
R
WTQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
60.39
32%
26
- C3 -
-
2XN3
1
THBG_HUMAN
A:
[214-294]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.36
32%
36
- C3 -
-
4YIA
1
?
A:
[246-326]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.94
32%
32
- C3 -
-
2XN6
6
THBG_HUMAN
A:
[215-295]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
58.53
32%
34
- C3 -
-
2RIW
1
?
A:
[209-289]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
58.37
32%
30
- C3 -
-
2RIV
1
THBG_HUMAN
A:
[214-294]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
58.27
32%
34
- C3 -
-
2XN7
3
?
A:
[215-295]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.95
32%
33
- C3 -
-
2CEO
1
THBG_HUMAN
A:
[210-298]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
57.59
15%
-114
- C4 -
-
2P9R
-
A2MG_HUMAN
A:
[114-200]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
K
P
G
Q
T
V
K
F
R
V
V
S
-----
M
D
E
N
---
F
H
---------------------
P
-----
L
N
---
E
L
I
P
L
V
-----
Y
I
Q
D
P
K
G
N
R
I
A
Q
W
Q
S
F
Q
-
L
-----
E
G
G
--
L
K
Q
--
F
S
F
P
----
L
---
S
---
S
E
P
F
-----
Q
G
--
S
Y
K
-----------
V
V
V
Q
K
---
K
-
S
---
G
---
G
R
------------
T
E
H
P
F
T
V
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
57.21
32%
34
- C3 -
-
2XN5
3
?
A:
[215-295]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
56.85
32%
41
- C3 -
-
4X30
4
THBG_HUMAN
A:
[226-312]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
-----
V
D
M
E
LN
C
T
V
L
Q
M
-------------
D
Y
S
K
N
A
---
L
A
L
F
---
V
L
P
K
E
G
-----
Q
M
E
S
V
E
-
A
A
M
S
S
K
T
L
K
K
-
W
N
R
L
-
L
Q
K
G
--
W
V
D
L
F
V
P
K
F
S
---
I
---
S
---
A
T
Y
D
-----
L
G
A
T
L
L
K
-----------
M
G
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
48.07
16%
6
- C4 -
-
3ISY
1
IPI_BACSU
A:
[15-119]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
P
E
Q
I
K
F
N
M
S
L
-----
K
N
Q
S
---
E
R
---------------------
A
---
I
E
F
Q
F
ST
G
Q
K
F
E
L
-----
V
V
Y
D
S
E
H
K
E
R
Y
R
Y
S
K
E
K
M
F
T
---
Q
A
F
Q
--
N
L
T
--
L
E
S
G
E
T
Y
D
F
---
S
---
D
V
W
K
EVP
E
-
P
G
--
T
Y
E
-----------
V
K
V
T
F
---
K
-
G
R
A
E
N
L
K
Q
V
Q
------------
A
V
Q
Q
F
E
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
45.92
7%
-42
- C4 -
-
5H1D
-
GDIR2_HUMAN
A:
[40-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
V
L
K
E
G
S
E
Y
R
V
K
I
H
F
-----
K
V
N
R
---
D
---------------------------
I
V
S
---
G
L
K
Y
V
Q
-----
H
T
Y
R
T
-
G
V
K
V
D
K
A
T
F
M
V
-
G
S
Y
G
-
P
R
P
E
--
E
Y
E
--
F
L
T
P
V
---
E
---
E
A
P
K
G
M
L
A
-----
R
G
--
T
Y
H
-----------
N
K
S
F
F
---
T
D
D
D
--
K
Q
D
H
L
S
------------
W
E
W
N
L
S
I
K
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.64
24%
-124
- C3 -
-
3CLR
1
ETFA_METME
D:
[213-275]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
---
E
E
T
N
V
E
-----
Q
F
R
E
L
A
D
E
A
G
A
T
L
C
C
S
A
---
P
I
-
A
D
A
G
--
W
L
P
--
K
S
R
Q
V
---
G
---
Q
---
S
G
K
V
-----
V
G
--
S
C
K
-----------
L
Y
V
A
M
---
G
-
I
S
--
G
S
I
Q
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.56
18%
-12
- C4 -
-
1WQS
2
?
A:
[1-173]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APPTLWSR
V
V
R
F
G
S
G
W
G
F
WVSPT
V
F
I
T
T
THVIPTGVREFFGEPI
E
S
I
A
I
H
R
A
G
E
F
T
Q
F
R
F
S
R
KVRPD
L
T
G
M
---
V
L
E
E
G
C
P
-----------
E
G
V
V
C
S
---
I
L
I
K
---
R
D
S
G
E
L
-----
L
P
L
A
V
R
M
G
A
I
A
S
M
K
I
Q
G
-
R
L
V
H
-
G
Q
S
G
--
M
L
L
--
T
G
A
N
A
---
K
GMD
L
---
G
T
L
P
GD---
C
G
--
A
P
Y
-----------
V
Y
K
R
N
N
D
W
V
-
V
C
--
G
V
H
A
A
A
------------
T
K
S
G
N
T
V
V
C
A
V
Q
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.06
36%
-37
* C7 *
-
5F89
-
?
H:
[59-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
H
Y
N
P
-----------
S
L
K
S
R
A
SVS
V
D
L
S
---
R
N
Q
F
T
L
-----
K
V
T
S
V
T
T
A
D
A
A
V
Y
Y
C
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
41.28
12%
-15
- C5 -
-
4AIF
-
AIP_HUMAN
A:
[1-144]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEEKAKA
V
P
L
I
H
Q
E
G
N
R
L
Y
R
E
G
H
V
K
E
A
A
A
K
Y
-----
Y
D
A
I
---
A
C
L
K
N
L
Q
M
K
EQPGS
P
E
W
I
Q
L
D
Q
Q
I
---
T
P
L
L
---
L
N
Y
C
Q
C
-----
K
L
V
V
E
E
Y
Y
E
V
L
D
H
C
S
S
I
-
L
N
K
Y
D
D
N
V
K
--
A
Y
F
--
K
R
G
K
A
---
H
---
A
---
A
V
W
N
-----
A
Q
--
E
A
Q
-----------
A
D
F
A
K
---
V
-
L
E
--
L
D
P
A
L
A
------------
P
V
V
S
R
E
L
Q
A
L
E
A
R
I
R
Q---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
40.82
0%
-367
- C6 -
-
2KPW
-
A:
[36-48]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
Q
P
M
G
---
G
W
E
M
I
R
-----
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
39.46
7%
-14
- C4 -
-
2N80
-
GDIR1_HUMAN
B:
[101-201]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
L
K
E
G
V
E
Y
R
I
K
I
S
F
-----
R
V
N
R
---
E
---------------------------
I
V
S
---
G
M
K
Y
I
Q
-----
H
T
Y
R
K
-
G
V
K
I
D
K
T
D
Y
M
V
-
G
S
Y
G
-
P
R
A
E
--
E
Y
E
--
F
L
T
P
V
---
E
E
A
P
K
---
G
M
L
A
-----
R
G
--
S
Y
S
-----------
I
K
S
R
F
---
T
D
D
D
--
K
T
D
H
L
S
------------
W
E
W
N
L
T
I
K
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------