@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQ48: (2017-11-25 )
MGITPMYVCLCRGITDQDIKDAIENGAESYREIRDLLDLGTCCGRCAPEARAIISEELAEIAARISVAA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10------..-------------..-----------..------..20...-.....30.-.....----.--.40-.---.---------------.--------.-----.-....50...-.....60--.........---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGIT
P
M
Y
V
C
L
C------RG-------------I
T
-----------
D
Q
------
D
I
K
D
A
I
E
-
N
G
A
E
S
Y
R
E
-
I
R
D
L
L
----
D
--
L
G
--
T
---
C
---------------
C
--------
G
-----R-C
A
P
E
A
R
A
I
I
-
S
E
E
L
A
E
---
I
A
A
R
I
SVAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
87.55
49%
-179
- C3 -
-
4E6K
1
?
G:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
D
A
I
Y
-
E
G
C
C
S
Y
R
E
-
V
R
E
A
T
----
G
--
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
T
L
N
D
---
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
86.71
47%
-179
- C3 -
-
4E6K
1
?
G:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
D
A
I
Y
-
E
G
C
C
S
Y
R
E
-
V
R
E
A
T
----
G
--
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
T
L
N
D
---
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
86.29
46%
-179
- C3 -
-
4E6K
1
?
G:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
D
A
I
Y
-
E
G
C
C
S
Y
R
E
-
V
R
E
A
T
----
G
--
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
T
L
N
D
---
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_CBE
84.97
46%
-178
- C3 -
-
4E6K
1
?
I:
[1-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
D
A
I
Y
-
E
G
C
C
S
Y
R
E
-
V
R
E
A
T
----
G
--
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
T
L
N
D
---
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
63.86
20%
-147
- C3 -
-
1Y56
1
?
A:
[410-467]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
V
Q
I
C
G
C
-------
D
-------------
V
S
-----------
L
K
------
K
V
D
E
V
I
R
-
K
G
I
T
D
L
Q
I
-
I
K
R
L
T
----
H
--
L
A
--
M
---
G
F--------------
C
--------
Q
G----
R
Y
C
L
F
N
G
A
V
V
V
-
S
Q
R
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
58.90
47%
-199
- C3 -
-
4E6K
1
?
H:
[1-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
--------------------------
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
58.66
46%
-199
- C3 -
-
4E6K
1
?
H:
[1-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
V
C
L
C
------
Q
G
-------------
V
T
-----------
D
N
------
Q
I
R
--------------------------
V
G
--
T
---
Q
---------------
C
--------
G
-----
K
-
C
A
S
L
A
K
Q
V
V
-
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
57.26
17%
13
* C3 *
-
1X31
2
?
A:
[1-963]
S
K
P
Q
R
L
S
AAQTAGARINRD
E
A
L
T
L
T
V
DG
Q
Q
L
S
A
F
RGDT
V
A
S
A
M
L
A
N
GLRSCGNSMYLDRPRGIFSAGVEEPNA
L
I
T
V
G
ARHQADINESMLPATTVSVTDG
L
N
A
T
L
L
SG
L
G
V
L
D
PSEDP
A
Y
Y
D
H
V
H
V
H
T
D
V
L
V
V
G
AG
P
A
G
L
A
A
A
R
E
A
S
R
S
GAR
V
M
L
L
D
ERPEAGGTLREASGEQIDGID
A
A
Q
W
I
D
A
V
T
E
E
L
A
A
AEE
T
T
H
L
Q
RTTVFGSYDANY
I
L
A
A
Q
RRTVHLD
G
P
S
G
Q
GVSR
E
R
I
W
H
I
RAK
Q
V
V
L
AT
A
A
H
E
R
P
I
V
F
E
NNDRPGIML
A
G
S
V
R
S
Y
L
NRFGVRAGS
K
I
A
V
A
T
TNDSV
Y
P
L
V
S
E
L
AASGGVVAVIDARQNIS
A
A
A
A
Q
A
V
T
D
G
V
T
V
L
T
GSVVA
N
T
E
A
D
ASGELS
A
V
L
V
A
T
L
D
EQRNL
G
E
A
Q
R
F
E
A
D
V
L
A
V
S
G
G
F
N
P
VV
H
L
H
S
Q
R
Q
G
K
L
N
W
D
TSIH
A
F
V
P
A
D
AVAN
Q
H
L
A
G
ALTGLLD
T
A
S
A
L
S
T
G
A
A
T
G
A
A
A
A
S
A
A
G
F
E
K
I
A
E
V
P
Q
A
L
A
VPA
G
E
T
R
P
V
W
L
V
P
S
LSGDDA
V
H
Y
K
F
H
F
V
D
L
Q
------
R
D
-------------
Q
T
-----------
V
A
------
D
V
L
R
A
T
G
-
A
G
M
Q
S
V
E
H
-
I
K
R
Y
T
----
S
--
I
S
TA
N
---
D
---------------
Q
--------
G
-----
K
-
T
S
G
V
A
A
I
G
V
-
I
A
A
V
L
G
---
I
E
N
P
A
Q
I
G
T
T
T
F
R
A
PY
T
P
V
S
F
A
A
L
A
GRTRGELL
D
P
A
R
L
T
AM
H
P
W
H
L
A
H
G
A
K
F
E
D
VGQ
W
K
R
P
W
Y
Y
P
Q
DGES
M
D
E
A
V
Y
R
E
C
K
A
V
R
D
S
V
G
M
L
DAST
L
G
K
I
E
I
R
G
KD
A
A
E
F
L
N
R
M
Y
TNGYTKLKVG
M
G
R
Y
G
V
M
C
K
ADGMIF
D
D
G
V
T
L
R
LAED
R
F
L
M
H
T
T
TGG
A
A
D
V
L
D
W
L
E
E
W
L
Q
TEWPELD
V
T
C
T
S
VTEQ
L
A
T
V
A
V
V
G
PR
S
R
D
V
I
A
K
L
A
S
SLDVSNDAFKFMAFQDVTLDSG
I
E
A
R
I
S
RISFSG
E
L
A
F
E
I
A
I
PAWH
G
L
Q
V
W
E
D
V
Y
A
A
G
Q
EFN
I
T
P
Y
G
T
E
T
M
H
V
L
R
A
E
K
GFIIVGQDTDGTVTPQDAGMEWVVSKLKDFVGKRSFSREDNVRED
R
K
H
L
V
S
V
L
P
VDSS
L
R
L
A
EG
A
A
L
V
A
AD
A
V
A
S
EG
V
T
P
M
EGWVT
H
A
Y
N
S
PALG
R
T
F
G
L
A
L
I
KNGRNRIG
E
V
L
K
T
P
V
DG
Q
L
V
D
V
Q
V
S
D
LVLFDPEGSRRD
37
Fugue
48.72
23%
-69
- C3 -
-
2LN3
-
?
A:
[1-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
-------------
R
T
-------------
I
T
-----------
S
Q
------
N
-
K
E
E
L
L
-
E
I
A
L
K
F
I
S
-
Q
G
--
L
----
D
--
L
E
--
V
---
E
---------------
F
--------
D
-----
S
-
T
D
D
K
E
I
E
E
F
-
E
R
D
M
E
D
---
L
A
K
K
T
G
V
Q
I
Q
K
Q
W
QGN
K
L
R
I
R
L
K
GSLEHHHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
47.50
22%
-72
- C3 -
-
2HU9
2
COPZ_ARCFU
A:
[69-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
P
K
P
V
C
Y
C
------
N
R
-------------
V
T
-----------
E
K
------
M
L
L
E
A
A
E
-
K
F
G
K
--
E
K
-
A
V
E
I
T
----
G
--
A
G
--
K
---
G
---------------
K
WCVVTNPS
G
-----
R
C
C
H
W
H
L
E
R
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
47.39
14%
-131
- C3 -
-
1US6
-
TRAM_RHIRD
A:
[12-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
L
R
P
L
-
I
G
L
T
------
R
G
-------------
L
P
-----------
P
T
------
D
L
E
T
I
T
I
-
D
A
I
R
T
H
R
R
-
L
V
E
K
A
----
D
--
E
L
--
F
---
Q
A
LP
E
T
Y
K
T
GQ
A
C
G
G
P
Q
--------
H
-----
I
-
R
Y
I
E
A
S
I
E
M
-
H
A
Q
M
S
A
---
L
N
T
L
Y
S
I
L
G
FIPKVVV--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.88
22%
32
- C3 -
-
2GAG
1
?
A:
[475-538]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
V
N
Y
K
F
HFVDLQ
R
D
-------------
Q
T
-----------
V
A
------
D
V
L
R
A
T
G
-
A
G
M
K
S
V
E
H
-
I
K
R
Y
T
----
S
--
I
S
--
T
AN-
D
---------------
Q
--------
G
-----
K
T
S
G
V
A
A
I
G
V
I
-
A
A
V
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
42.72
6%
2
- C3 -
-
2QCU
5
GLPD_ECOLI
B:
[443-497]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
------
H
E
-------------
F
Y
-----------
E
A
------
E
L
K
Y
L
V
D
H
E
W
V
R
R
A
D
D
A
L
W
R
R
T
----
K
--
Q
G
--
M
WLN
A
---------------
D
--------
Q
-----
Q
---
S
R
V
S
Q
W
L
-
V
E
Y
T
Q
Q
---
R
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
41.57
19%
-72
- C3 -
-
1W9G
-
ERH_HUMAN
A:
[1-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
H
T
I
L
L
V
Q
PTKRPEG
R
T
Y
A
D
Y
ES
V
N
E
C
M
E
G
V
C
K
M
Y
E
E
H
L
------
K
R
-------------
M
------------
N
P
------
N
S
P
S
I
T
Y
-
D
I
S
Q
L
F
D
F
-
I
D
D
L
A
----
D
--
L
S
--
C
---
L
---------------
V
--------
Y
R
ADTQ
T
-
Y
Q
P
Y
N
K
D
W
I
-
K
E
K
I
Y
V
---
L
L
R
R
Q
A
Q
Q
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.94
40%
-132
- C2 -
-
4B2U
-
?
A:
[17-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
D
W--
C
---------------
C
--------
H
-----
K
-
C
V
P
E
G
K
R
F
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
40.02
19%
-282
- C3 -
-
2Z3I
1
BSD_ASPTE
B:
[60-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
T
A
A
A
-
A
A
A
G
N
L
T
C
-
I
V
A
I
G
NENR
G
--
I
L
--
S
---
P
---------------
C
--------
G
-----
R
-
C
R
Q
V
L
L
D
L
H
-
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.23
30%
-39
- C3 -
-
1W2C
2
IP3KA_HUMAN
A:
[18-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
R
Y
C
L
A
------
R
L
-------------
M
A
-----------
D
A
LRGCVP
A
F
H
G
V
V
E
-
R
D
G
E
S
Y
L
Q
-
L
Q
D
L
L
----
D
GF
D
G
--
P
---
C
---------------
V
--------
L
-----
D
-
C
K
M
G
V
R
T
Y
L
-
E
E
E
L
T
K
---
A
R
E
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.15
30%
-33
- C3 -
-
1W2D
2
IP3KA_HUMAN
A:
[18-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
R
Y
C
L
A
------
R
L
-------------
M
A
-----------
D
A
LRGCVP
A
F
H
G
V
V
E
-
R
D
G
E
S
Y
L
Q
-
L
Q
D
L
L
----
D
GF
D
G
--
P
---
C
---------------
V
--------
L
-----
D
-
C
K
M
G
V
R
T
Y
L
-
E
E
E
L
T
K
---
A
R
E
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
37.72
17%
3
- C3 -
-
4P78
-
?
A:
[1-86]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
P
I
F
I
F
K
T
------
V
E
G
F
D
G
Y
F
PDIDG
C
F
F
A
-----------
G
N
------
T
F
A
D
I
S
K
-
N
A
E
E
A
F
A
V
H
I
E
A
L
M
----
N
--
E
G
--
F
---
P
---------------
L
--------
P
-----
S
-
P
P
K
D
P
H
R
Y
I
D
D
P
R
L
K
E
EG
G
I
L
G
F
V
E
I
D
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
37.57
40%
-124
- C3 -
-
5LHA
1
?
A:
[282-318]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
G
V
A
P
D
I
L
C
L
A
------
K
G
-------------
I
T
AGY
I
P
L
G
A
T
L
F
N
Q
------
R
I
A
D
A
I
E
-
N
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------