@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQZ4: (2017-11-30 )
MIQRISHHDLEHVYATAVNTIQSQMNFQDAVAQLEEVARAGHGKAALFLAELYYQGFRVERDSMKAQYWQKLATMQA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10......-..20----------..--.......30........40..-------......50......--..60.....----...70......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIQRI-
S
H
H
D
L
E
H
V
Y
A
T
A
-
V
N
T
-----------
I
Q
--
S
QM
N
F
Q
D
A
V
A
Q
L
E
E
V
A
R
AGH
G
-------
K
A
A
L
F
L
A
E
L
Y
YQG
F
--
R
V
E
R
D
S
M
K
A
----
Q
Y
W
Q
K
L
ATMQA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
74.44
38%
-145
- C1 -
-
4BWR
3
ESIB_ECOL6
A:
[361-402]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
A
A
I
W
M
R
K
A
A
E
Q
G
L
S
-------
A
A
Q
V
Q
L
G
E
I
Y
Y
Y
G
L
--
G
V
E
R
D
Y
V
Q
A
----
W
A
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
74.43
30%
-142
- C1 -
-
3E4B
-
?
B:
[335-395]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
Y
P
Q
K
A
L
D
H
L
L
T
A
A
R
N
G
Q
N
-------
S
A
D
F
A
I
A
Q
L
F
S
Q
G
K
--
G
T
K
P
D
P
L
N
A
----
Y
V
F
S
Q
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
74.21
33%
-116
- C1 -
-
4BWR
3
ESIB_ECOL6
A:
[357-407]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
D
E
Q
Q
A
A
I
W
M
R
K
A
A
E
Q
G
L
S
-------
A
A
Q
V
Q
L
G
E
I
Y
Y
Y
G
L
--
G
V
E
R
D
Y
V
Q
A
----
W
A
W
F
D
T
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
73.47
30%
-113
- C1 -
-
5JJO
-
?
A:
[40-91]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
W
D
R
I
V
D
L
Y
S
K
A
V
E
R
G
H
W
-------
K
A
M
H
N
L
A
S
L
Y
R
T
G
W
-----
K
D
T
Q
K
A
----
L
D
L
Y
Q
K
M
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
71.67
30%
0
- C- -
-
3E4B
-
?
D:
[335-388]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
Y
P
Q
K
A
L
D
H
L
L
T
A
A
R
N
G
Q
N
-------
S
A
D
F
A
I
A
Q
L
F
S
Q
G
K
--
G
T
K
P
D
P
L
N
A
----
Y
V
F
S
Q
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
70.23
27%
-98
- C1 -
-
1KLX
-
HCPB_HELPY
A:
[38-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
N
K
Q
K
L
F
Q
Y
L
S
K
A
C
E
L
N
S
G
-------
N
G
C
R
F
L
G
D
F
Y
E
N
G
K
--
Y
V
K
K
D
L
R
K
A
----
A
Q
Y
Y
S
K
A
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
68.29
31%
-94
- C1 -
-
5B26
-
SE1L1_MOUSE
A:
[113-163]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
N
Y
D
L
A
L
K
Y
F
Q
K
A
A
E
Q
G
W
V
-------
D
G
Q
L
Q
L
G
S
M
Y
Y
N
G
I
--
G
V
K
R
D
Y
K
Q
A
----
L
K
Y
F
N
L
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
68.29
31%
-94
- C1 -
-
5B26
-
SE1L1_MOUSE
A:
[113-163]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
N
Y
D
L
A
L
K
Y
F
Q
K
A
A
E
Q
G
W
V
-------
D
G
Q
L
Q
L
G
S
M
Y
Y
N
G
I
--
G
V
K
R
D
Y
K
Q
A
----
L
K
Y
F
N
L
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
67.25
29%
-72
- C1 -
-
5JKP
-
?
A:
[37-89]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
W
G
R
I
V
E
I
Y
S
K
A
V
E
R
G
H
W
-------
K
A
M
H
N
L
A
N
L
Y
R
T
G
W
PG
G
V
E
K
D
P
Q
K
A
----
L
D
L
Y
Q
K
M
I
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
65.82
26%
-93
- C1 -
-
4BWR
1
ESIB_ECOL6
A:
[33-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
D
L
T
Q
A
M
D
W
F
R
R
A
A
E
Q
G
Y
T
-------
P
A
E
Y
V
L
G
L
R
Y
M
N
G
E
--
G
V
P
Q
D
Y
A
Q
A
----
V
I
W
Y
K
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
63.28
20%
13
- C1 -
-
1KLX
-
HCPB_HELPY
A:
[3-135]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGT
V
K
K
D
L
K
K
A
I
Q
Y
-
Y
V
K
A
C
E
L
N
E
M
F
G
-
C
L
S
-----------
L
V
S
N
S
Q
I
N
K
Q
K
L
F
Q
Y
L
S
K
A
C
E
L
N
S
G
-------
N
G
C
R
F
L
G
D
F
Y
E
N
G
K
--
Y
V
K
K
D
L
R
K
A
----
A
Q
Y
Y
S
K
A
C
G
L
N
D
Q
D
G
C
L
I
L
G
Y
K
Q
Y
A
GKGVVKN
E
K
Q
A
V
K
T
F
E
K
A
C
R
L
GS
E
D
A
C
G
I
L---------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
62.73
17%
-101
- C1 -
-
5B26
-
SE1L1_MOUSE
A:
[80-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
T
A
L
H
Y
F
K
K
A
A
D
M
G
N
P
-------
V
G
Q
S
G
L
G
M
A
Y
L
Y
G
R
--
G
V
Q
V
N
Y
D
L
A
----
L
K
Y
F
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
60.31
33%
0
- C- -
-
4ZZD
-
?
A:
[32-73]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
Q
V
K
E
A
S
N
G
-------
E
M
E
L
N
E
A
T
L
Y
T
I
F
K
--
R
L
E
K
D
G
I
I
S
----
S
Y
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.31
33%
0
- C- -
-
3F8B
-
?
A:
[32-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
Q
V
K
E
A
S
N
G
-------
E
M
E
L
N
E
A
T
L
Y
T
I
F
K
--
R
L
E
K
D
G
I
I
S
----
S
Y
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
59.95
20%
-34
- C1 -
-
5JJO
-
?
A:
[4-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRP
F
I
C
V
N
EKDH
L
P
S
L
D
-
P
Q
A
D
A
W
Y
R
E
A
V
A
-
L
A
K
-----------
P
D
--
T
L
R
P
W
D
R
I
V
D
L
Y
S
K
A
V
E
R
G
H
W
-------
K
A
M
H
N
L
A
S
L
Y
R
T
G
W
--
K
D
T
Q
K
A
L
D
L
------
Y
Q
K
M
I
D
L
K
V
P
Q
G
F
Y
D
M
A
A
M
IGNRAGVKNPATDGLT
F
L
D
K
A
A
S
L
GN
P
P
A
L
T
E
L
G
R
L
Y
I
YVAGQ
D
E
L
G
L
K
Y
T
N
C
A
A
G
Q
GY
A
P
A
N
Y
E
L
A
M
Y
Y
R
LVAHN
Y
P
K
A
A
G
Y
Y
L
L
A
A
S
Q
GN
D
D
A
A
F
F
M
S
G
V
FDKTSPDVDRMWYAPD
E
K
L
H
K
L
Y
D
G
I
Y
D
Q
L
A
A
D
PDLRFPN
L
I
K
D
H
PLPPHPTQGYDADRPD
22
HHSearch
58.96
24%
-60
- C1 -
-
1OUV
-
HCPC_HELPY
A:
[222-272]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
N
F
K
E
A
L
A
R
Y
S
K
A
C
E
L
E
N
G
-------
G
G
C
F
N
L
G
A
M
Q
Y
N
G
E
--
G
V
T
R
N
E
K
Q
A
----
I
E
N
F
K
K
G
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
56.28
18%
63
- C1 -
-
3E4B
-
?
A:
[6-434]
DQ
R
L
A
N
E
A
L
K
R
G
D
T
V
T
A
Q
Q
N
Y
Q
Q
L
A
E
L
GYSEAQVGLAA
Q
A
R
L
G
R
L
L
A
A
KAT
E
A
E
H
H
E
A
E
S
L
L
K
K
A
F
A
N
GEGN
T
L
I
P
L
A
M
L
Y
L
Q
Y
PHSFPNVN
A
Q
Q
Q
I
S
Q
W
Q
A
A
GYPE
A
G
L
A
Q
V
L
L
Y
R
T
Q
GTYDQH
L
D
D
V
E
R
I
C
K
A
A
L
NTTDI
C
Y
V
E
L
A
T
V
Y
Q
K
K
QQ
P
E
Q
Q
A
E
L
L
K
Q
M
E
A
G
V
S
R
GTVT
A
Q
R
V
D
S
V
A
R
V
L
G
DATLGTPD
E
K
T
A
Q
A
L
L
E
K
I
A
P
-
G
Y
P
A
S
W
V
S
L
A
Q
L
-
L
Y
D
-----------
F
P
--
E
L
G
D
V
E
Q
M
M
K
Y
L
D
N
G
R
A
A
D
Q
P
-------
R
A
E
L
L
L
G
K
L
Y
Y
E
G
K
--
W
V
P
A
D
A
K
A
A
----
E
A
H
F
E
K
A
V
G
R
E
V
A
A
D
Y
Y
L
G
Q
I
Y
R
R
GYLGKVY
P
Q
K
A
L
D
H
L
L
T
A
A
R
N
GQNS
A
D
F
A
I
A
Q
L
F
S
QGKGTKPD
P
L
N
A
Y
V
F
S
Q
L
A
K
A
Q
DT
P
E
A
N
D
L
A
T
Q
L
E
APLT
P
A
Q
R
A
E
G
Q
R
L
V
Q
Q
E
L
A
A
R
G
T
LLQLHA------------------------------------------------------------
36
Fugue
54.10
25%
73
- C1 -
-
5KS5
-
A:
[1-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHM
S
P
D
R
C
Q
D
W
L
E
A
L
H
W
Y
N
T
A
-
L
E
M
TDCDE
G
G
E
Y
D
G
M
Q
--
D
E
P
R
Y
M
M
L
A
R
E
A
E
M
L
F
T
G
G
Y
G
LE-----
K
D
P
Q
R
S
G
D
L
Y
T
Q
A
A
--
E
A
A
M
E
A
M
K
G
R
L
A
N
Q
Y
Y
Q
K
A
E
E
A
W
A
Q
M
E
E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
52.57
19%
21
- C1 -
-
5MPW
-
MORF1_ARATH
A:
[1-115]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
M
T
V
L
F
-
E
G
C
D
Y
N
H
W
L
I
T
M
D
F
S
K
-----------
E
E
--
T
P
K
S
P
E
E
M
V
A
A
Y
E
E
T
C
A
Q
G
L
G
IS
V
E
E
A
K
Q
R
M
Y
A
C
S
T
T
T
Y
Q
G
F
--
Q
A
I
M
T
E
Q
E
S
----
E
K
F
K
D
L
P
G
V
V
F
I
L
P
D
S
Y
IDPQNKEYGGDKYENG
V
I
T
H
R
P-------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
52.09
15%
-72
- C1 -
-
1KLX
-
HCPB_HELPY
A:
[74-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
D
L
R
K
A
A
Q
Y
Y
S
K
A
C
G
L
N
D
Q
-------
D
G
C
L
I
L
G
Y
K
Q
Y
A
G
K
--
G
V
V
K
N
E
K
Q
A
----
V
K
T
F
E
K
A
C
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------