@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VR08: (2017-11-30 )
MPFQSLPNWFQLGAFLLAINAGMINVLGLITLLHQSVSHMTGNVSMLAMSLVNWQFEHIIYLVLVILCYVCGSFYSGFILGNSHFKLGRRYGIPLSLVSLFIFLCWLLLPYFPKYGLLWACVAMGLQNAMVSHYKGTIIRTTHLSGVLTDLGLALGYIARGLKVENRRIILHLLIFIGFLSGGIIAALVHPYLKLQSFLLPAILSLTLSISYWAVYFHSSSSSNSD
Atome Classification :
(20 SA)
---------------------------------------------------.........10.......--------.20..----------......30.....--...40........50...--------.....60........70-----.........80.---......-.90.......--.100-----..-------...-..110----.-......120....----------...130--.....--...--.140.---------...---...150.------......---160.......170...--....180......------.--------------.----------190...-....200.......210.......220....---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------MPFQSLP
N
W
F
Q
L
G
A
F
L
L
A
--------IN
A
G
M
----------
I
N
V
L
G
L
I
T
L
L
H
Q
S
--
V
S
H
MTG
N
V
S
M
L
A
M
S
L
V
N
W
--------
Q
F
E
H
I
I
Y
L
V
L
V
I
L
C
Y
V
------
C
G
S
F
Y
S
G
F
I
LGN---S
H
F
K
L
G
-
R
RYGI
P
L
S
L
V
--
S
L
F
I
-----
F
L
-------
C
W
L
-
L
L
P
Y
F----P-K
Y
G
L
L
W
A
C
V
A
M
G
L
----------
Q
N
A
M
----
V
S
HYK--
G
T
I
--
I
R
T
T
H
---------
L
S
G
---
V
L
T
D
L
G
L
------
A
L
G
Y
I
A---RG
L
K
VEN
R
R
I
I
L
H
L
L
I
--
F
I
G
F
L-S
G
G
I
I
A
A
------
L
--------------
V
----------
H
P
Y
L
K
L
-
Q
S
F
L
L
P
A
I
L
S
L
T
L
S
I
S
Y
W
A
V
Y
F
HSSSSSNSD---------------------------
17
Fugue
82.82
19%
-165
- C3 -
-
3WXW
-
ADR2_HUMAN
A:
[4-290]
-------------------------------------------EFEG
R
W
R
V
I
P
H
D
V
L
P
D
W
L
K
D
N
D
F
L
L
H
GHRPPMPS
F
R
A
C
F
----------
K
S
I
F
R
I
H
T
E
T
G
N
I
--
W
T
H
L
L
G
C
V
F
F
L
C
L
G
I
F
Y
M
F
RISFVAP
L
Q
E
K
V
V
F
G
L
F
F
L
G
A
I
L
------
C
L
S
F
S
W
L
F
H
T
V
Y
---
C
H
S
E
G
V
-
S
R
L
F
S
K
L
D
Y
S
--
G
I
A
L
L
I
M
G
S
F
V
-------
P
W
L
-
Y
Y
S
F
Y
CNP
Q
P
-
C
F
I
Y
L
I
V
I
C
V
L
G
I
----------
A
A
I
I
----
V
S
Q
W
D
MF
A
T
P
--
Q
Y
R
G
V
---------
R
A
G
---
V
F
L
G
L
G
L
SG
I
I
P
T
L
H
Y
V
I
S
---
E
G
F
L
K
A
A
T
I
I
G
W
L
M
L
M
--
A
S
L
Y
I
-
T
G
A
A
L
Y
A
------
A
RI
P
E
R
F
F
PGKCDIW
F
----------
H
S
H
Q
L
F
-
H
I
F
V
V
A
G
A
F
V
H
F
H
G
V
S
N
L
Q
E
F
R
F
M
I
G
G
G
C
S
E
ED-------------------------
22
Fugue
79.49
15%
-92
* C2 *
-
1T98
-
MUKF_ECOLI
A:
[8-281]
------------------------------------------VP
E
L
V
A
W
A
R
K
N
D
F
S
I
S
L
P
V
D
R
L
S
F
L
L
A
--------
V
A
T
L
N
G
E
RLDGEMS
E
G
E
L
V
D
A
F
R
H
V
S
D
A
--
F
E
Q
T
S
E
T
I
G
V
R
A
N
N
A
I
N
D
M
-------
V
R
Q
R
L
L
N
R
F
T
I
Y
R
L
T
P
------
L
G
I
G
I
T
D
Y
Y
I
R
Q
R
E
F
S
T
L
R
L
S
M
Q
L
S
I
V
A
G
E
L
K
--
R
A
A
D
-----
A
A
E
E
GGD
E
F
H
W
H
-
R
N
V
Y
A
----
P
L
K
Y
S
V
A
E
I
F
D
S
I
D
L
----------
T
Q
R
L
M
D
E
Q
Q
Q
Q
V
K
--
D
D
I
--
A
Q
L
L
N
K
DWRAA
I
S
S
C
E
L
---
L
L
S
E
T
S
G
------
T
L
R
E
L
Q
---
D
T
L
E
A
A
G
D
K
L
Q
A
N
L
L
R
--
I
Q
D
A
T
M
T
H
D
D
L
H
F
------
V
--------------
D
----------
R
L
V
F
D
L
-
Q
S
K
L
D
R
I
I
S
W
G
Q
Q
S
I
D
L
W
I
G
Y
D
R
H
V
---------------------------------
19
Fugue
71.89
14%
-99
- C3 -
-
4XLG
-
SLX1_CANGA
A:
[3-300]
----------------------------------------------------
E
F
Q
Q
I
P
D
F
Y
--
G
C
Y
L
L
Q
S
-------
I
S
K
R
Q
----------
S
F
Y
I
G
S
T
P
N
P
V
R
R
--
L
R
Q
H
N
G
S
L
S
R
T
K
R
D
G
T
R
---------
P
W
E
M
V
A
I
V
Y
G
F
P
S
R
I
A
------
A
L
Q
F
Q
H
A
W
Q
H
G
T
---
R
Y
I
S
I
H
-
H
K
L
A
M
I
T
S
L
L
K
N
E
Y
F
R
-----
Y
M
-------
D
L
T
-
L
H
F
F
N
----
Q
-
K
V
E
E
I
W
K
N
D
K
F
N
V
----------
S
N
Y
T
----
V
S
L
S
Q
--
D
A
L
TE
I
N
N
D
T
---------
I
D
D
---
I
M
D
V
N
E
K
------
N
M
E
L
V
Q
---
N
L
Y
S
T
T
L
A
E
K
T
K
T
L
L
L
--
Y
K
E
K
I
-
D
T
G
I
N
T
C
QFCNKI
I
--------------
K
----------
H
N
N
I
S
E
-
N
L
F
A
F
C
R
D
T
S
C
T
F
V
S
H
L
A
C
A
Y
R
Y
F
M
S
E
D
T
I
I
PQSPKCPKCYTLLK
W
C
D
V
I
Y
Y
S
I
K
L
N
K
26
Fugue
67.55
21%
-160
- C2 -
-
5TJ5
-
VATO_YEAST
B:
[1-213]
---------------------------------------------------
M
N
K
E
S
K
D
D
D
M
S
L
G
K
F
--
S
--------
F
S
H
F
L
----------
Y
Y
V
Y
G
L
Y
K
L
F
T
G
H
--
G
S
D
I
N
F
G
K
F
L
L
R
T
S
P
Y
M
W
--------
A
N
---
L
G
I
A
L
C
V
G
L
S
V
------
V
G
A
A
W
G
I
F
I
T
G
S
---
S
M
I
G
A
G
-
V
R
A
P
R
I
T
T
K
N
--
L
I
S
I
-----
I
F
-------
C
E
V
-
V
A
I
Y
---------------------------------------------
G
L
I
--
I
A
I
V
F
---------
S
S
K
---
S
N
L
Y
T
G
Y
------
S
L
F
W
A
G
---
I
T
V
G
A
S
N
L
I
C
G
I
A
V
G
I
--
T
G
A
T
A
-
A
I
S
F
V
K
I
------
L
--------------
V
----------
I
E
I
F
G
S
-
I
L
G
L
L
G
L
I
V
G
L
L
M
A
G
K
----------
A
S
E
F
Q
---------------------------
24
Fugue
58.52
9%
-65
- C2 -
-
1CB8
1
CSLA_PEDHD
A:
[4-313]
G
T
A
E
L
I
M
K
R
V
M
L
D
L
KKPLRN
M
D
K
V
A
E
K
N
L
N
T
LQPDGSWKDVPYKDDAMTNW
L
P
N
N
H
L
L
Q
L
E
T
I
I
Q
A
Y
I
E
--------
K
D
S
H
Y
----------
Y
G
D
D
K
V
F
D
Q
I
S
K
A
--
F
K
Y
W
Y
D
S
D
P
K
S
R
-
N
W
W
H
N
--------
E
I
A
T
P
Q
A
L
G
E
M
L
I
L
M
R
Y
GKKPL
D
E
A
L
V
H
K
L
T
E
R
M
---
K
R
G
E
P
E
-
K
K
T
G
A
N
K
T
D
I
--
A
L
H
Y
-----
F
Y
-------
R
A
L
-
L
T
S
D
E
----
A
-
L
L
S
F
A
V
K
E
L
F
Y
P
V
Q
F
V
H
YEEGLQ
Y
D
Y
S
----
Y
L
Q
H
G
--
P
Q
L
--
Q
I
S
S
Y
---------
G
A
V
---
F
I
T
G
V
L
K
------
L
A
N
Y
V
R
DTP
Y
A
L
S
T
E
K
L
A
I
F
S
K
Y
Y
R
DS
Y
L
K
A
I
-
R
G
S
Y
M
D
F
------
N
--------------
V
EGRGVSRPDI
L
N
K
K
A
E
-
K
K
R
L
L
V
A
K
M
I
D
L
K
H
T
E
E
W
A
D
A
I
A
R
T
D
S
T
V
A
A
GYK------------------------
25
Fugue
50.67
14%
-105
- C1 -
-
4D10
-
CSN7A_HUMAN
G:
[12-219]
---------------------------------------------------------
T
G
Q
N
Q
E
Q
F
L
L
L
A
--------
K
S
A
K
G
----------
A
A
L
A
T
L
I
H
Q
V
L
E
A
PG
V
Y
V
F
G
E
L
L
D
M
P
N
V
R
E
L
A
E
--------
S
D
F
A
S
T
F
R
L
L
T
V
F
A
Y
--------
G
T
Y
A
D
Y
L
A
E
A
R
---
N
L
P
P
L
T
-
E
A
Q
K
N
K
L
R
H
L
--
S
V
V
T
-----
L
A
-------
A
K
V
K
C
I
P
Y
A
----
V
-
L
L
E
A
L
A
L
R
N
V
R
Q
L
----------
E
D
L
V
----
I
E
A
V
Y
--
A
D
V
--
L
R
G
S
L
---------
D
Q
R
NQ
R
L
E
V
D
Y
S
I
------
G
R
D
I
Q
R
---
Q
D
L
S
A
I
A
R
T
L
Q
E
W
C
V
G
--
C
E
V
V
L
-
S
G
I
E
E
Q
V
------
S
--------------
R
----------
A
N
Q
H
K
E
-
Q
Q
L
G
L
K
Q
Q
I
E
----------------
S
E
V
A
N
---------------------------
23
Fugue
33.80
33%
-99
- C3 -
-
5MQF
-
SRRM2_HUMAN
S:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
N
--
G
I
G
--
L
P
T
P
R
---------
G
S
G
---
T
N
-------------
G
Y
V
Q
---
R
N
L
S
L
V
R
G
R
R
----------------------------------------------------------------------------------------------------------------------
15
HHSearch
32.59
24%
-378
- C4 -
-
4U4T
-
NARK_ECOLI
A:
[175-198]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
G
V
S
-
V
M
Q
L
V
A
P
------
L
--------------
V
----------
V
S
L
--------------------------------------------------------------
2
HHSearch
31.93
12%
-176
- C4 -
-
4GBY
1
XYLE_ECOLI
A:
[6-31]
---------------------------------------------------------
N
S
S
Y
I
F
S
I
T
L
V
A
--------
T
L
G
G
L
----------
L
F
G
Y
D
T
A
V
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
31.21
12%
-176
- C4 -
-
4GC0
1
XYLE_ECOLI
A:
[6-31]
---------------------------------------------------------
N
S
S
Y
I
F
S
I
T
L
V
A
--------
T
L
G
G
L
----------
L
F
G
Y
D
T
A
V
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
28.16
23%
-187
- C4 -
-
4ZP0
1
MDFA_ECOLI
A:
[141-162]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
--
L
I
A
P
L
-
L
G
P
L
V
G
A
------
A
--------------
W
----------
I
H
V
L
P
W
-----------------------------------------------------------
16
HHSearch
28.07
24%
-192
- C4 -
-
4U4V
-
NARK_ECOLI
A:
[175-200]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
G
V
S
-
V
M
Q
L
V
A
P
------
L
--------------
V
----------
V
S
L
--------------------------------------------------------------
20
Fugue
24.47
26%
-156
* C4 *
-
4KT0
-
PSAM_SYNY3
M:
[2-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
S
------
D
--------------
T
----------
Q
I
L
A
A
L
-
V
V
A
L
L
P
A
F
L
A
F
R
L
S
T
E
L
Y
K
---------------------------------------
18
Fugue
22.79
37%
0
- C- -
-
1JB0
-
PSAM_THEEB
M:
[1-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
------
L
TD------------
T
----------
Q
V
Y
V
A
L
-
V
I
A
L
L
P
A
V
L
A
F
R
L
S
T
E
L
Y
K
---------------------------------------
11
HHSearch
22.30
16%
-156
- C4 -
-
2CFQ
-
LACY_ECOLI
A:
[145-163]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
G
--
C
V
G
W
A
-
L
G
A
S
I
V
G
------
I
--------------
M
----------
F
T
---------------------------------------------------------------
12
HHSearch
21.21
16%
-240
- C4 -
-
1PV7
-
LACY_ECOLI
A:
[145-163]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
G
--
C
V
G
W
A
-
L
G
A
S
I
V
G
------
I
--------------
M
----------
F
T
---------------------------------------------------------------
5
HHSearch
21.00
24%
-123
- C4 -
-
4ZW9
-
GTR3_HUMAN
A:
[95-111]
--------------------------------------------------------------------------------------------------------------------------------------------------
G
G
M
------
I
G
S
F
S
V
G
L
F
V
N
R
---
F
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
20.02
14%
-86
- C4 -
-
4XNJ
1
?
A:
[154-183]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
--
N
L
G
A
F
-
I
A
P
L
I
V
G
------
A
--------------
A
----------
Q
E
A
A
G
Y
-----------------------------------------------------------
21
Fugue
19.06
28%
116
* C3 *
-
2MG2
-
A:
[1-28]
-------------------------------------------------------
K
K
K
N
W
F
D
I
T
N
W
L
W
Y
--------
I
K
L
F
I
----------
M
I
V
G
G
L
V
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
18.74
14%
-168
- C4 -
-
4IKV
2
?
A:
[162-197]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
M
G
I
--
N
L
G
A
F
-
L
A
P
L
V
V
G
------
T
--------------
A
----------
G
M
K
Y
N
F
H
L
G
F
G
L
A
A
V
G
M
F
-----------------------------------------------