@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VRX5: (2017-12-05 )
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
M
A
R
I
L
I
VDDSPTE
T
F
R
F
K
E
I
L
T
KHGY
D
V
L
EASNGADG
V
T
L
AKAEQP
D
L
V
L
M
D
V
VMPGV
N
G
F
Q
A
T
R
Q
ITRDEDTKHI
P
V
V
I
VSTKDQ
A
T
D
R
V
WGKRQG
A
I
D
Y
L
IKPI
E
E
K
Q
L
I
D
V
I
K
Q
FLN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
93.06
37%
-123
- C2 -
-
2WB4
1
PLED_CAUCN
A:
[3-119]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
R
H
I
P
V
V
L
I
T
A
L
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
D
D
V
M
L
F
A
R
V
R
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
91.23
37%
-126
- C2 -
-
2V0N
-
PLED_CAUCN
A:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
R
H
I
P
V
V
L
I
T
A
L
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
D
D
V
M
L
F
A
R
V
R
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
90.82
37%
-133
- C2 -
-
1W25
-
PLED_CAUCN
A:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
R
H
I
P
V
V
L
I
T
A
L
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
D
D
V
M
L
F
A
R
V
R
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
90.29
35%
-148
- C2 -
-
1NXX
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
----
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
89.80
33%
-147
- C2 -
-
1B00
-
PHOB_ECOLI
A:
[4-121]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
R
D
I
P
V
V
M
L
T
A
R
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
S
P
K
E
L
V
A
R
I
K
A
V
M
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
89.58
35%
-134
- C2 -
-
1NXV
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
89.23
35%
-132
- C2 -
-
1NXW
1
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
89.10
35%
-133
- C2 -
-
1NXS
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
--
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
88.48
35%
-126
- C2 -
-
2A9O
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
88.42
35%
-126
- C2 -
-
2A9P
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
Fugue
87.22
36%
-132
- C2 -
-
1W25
3
PLED_CAUCN
A:
[1-454]
S
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
R
H
I
P
V
V
L
I
T
A
L
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
K
L
V
I
D
E
L
R
Q
R
E
A
S
GRRMGVIAGAAARLDG
L
G
G
R
V
L
I
V
D
DN
E
R
Q
A
Q
R
V
A
A
E
L
GVE
H
R
P
V
I
E
SD
P
E
K
A
K
I
S
A
G
GPVD
L
V
I
V
N
AAAKNFD
G
L
R
F
T
A
A
L
R
S
E
ERTRQ
L
P
V
L
A
M
V
D
PDD
R
G
R
M
V
K
A
L
E
I
GVN
D
I
L
S
R
PID
P
Q
E
L
S
A
R
V
K
T
Q
I
Q
R
K
R
Y
T
D
Y
L
R
N
NLDHSLELAVTDQLTGLHN
R
R
Y
M
T
G
Q
L
D
S
L
V
K
R
A
T
L
G
G
D
P
V
S
A
L
L
I
D
I
D
F
F
K
K
I
N
D
TFG
H
D
I
G
D
E
V
L
R
E
F
A
L
R
L
A
S
N
V
RAI
D
L
P
C
RYGGE
E
F
V
V
I
M
P
DTA
L
A
D
A
L
R
I
A
E
R
I
R
M
H
V
S
G
S
P
F
T
V
AHGR
E
M
L
N
V
T
I
S
I
G
V
S
A
T
A
G
EGDT
P
E
A
L
L
K
R
A
D
E
G
V
Y
Q
A
K
A
S
GRN
A
V
V
G
K
A
AH
4
PsiBlast_PDB
87.16
35%
-131
- C2 -
-
1NXP
1
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
86.84
35%
-147
- C- -
-
2A9Q
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
-----
D
G
L
E
V
A
K
T
I
R
K
---
T
S
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
N
R
E
L
Q
A
R
V
K
A
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
86.09
31%
-154
- C2 -
-
2JBA
1
PHOB_ECOLI
A:
[4-121]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
W
P
D
L
I
L
L
A
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
R
R
E
S
M
T
R
D
I
P
V
V
M
L
T
A
R
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
C
I
T
K
P
F
S
P
K
E
L
V
A
R
I
K
A
V
M
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
85.78
31%
-161
- C2 -
-
1M5U
-
?
A:
[4-120]
--
K
V
L
I
V
E
D
N
E
L
N
M
K
L
F
H
D
L
L
E
A
Q
G
Y
E
T
L
Q
T
R
E
G
L
S
A
L
S
I
A
R
E
N
K
P
D
L
I
L
M
D
I
Q
L
P
E
I
S
G
L
E
V
T
K
W
L
K
E
D
D
D
L
A
H
I
P
V
V
A
V
T
A
---------
I
R
-
G
G
C
E
A
Y
I
S
K
P
I
S
V
V
H
F
L
E
T
I
K
R
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
85.52
31%
-145
- C- -
-
1M5T
-
?
A:
[4-120]
--
K
V
L
I
V
E
D
N
E
L
N
M
K
L
F
H
D
L
L
E
A
Q
G
Y
E
T
L
Q
T
R
E
G
L
S
A
L
S
I
A
R
E
N
K
P
D
L
I
L
M
D
I
Q
L
P
E
I
S
G
L
E
V
T
K
W
L
K
E
D
D
D
L
A
H
I
P
V
V
A
V
T
A
F
A
M
K
G
D
E
E
R
I
R
E
G
G
C
E
A
Y
I
S
K
P
I
S
V
V
H
F
L
E
T
I
K
R
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
110
HHSearch
84.46
31%
-136
- C- -
-
1M5T
-
?
A:
[3-118]
-
K
K
V
L
I
V
E
D
N
E
L
N
M
K
L
F
H
D
L
L
E
A
Q
G
Y
E
T
L
Q
T
R
E
G
L
S
A
L
S
I
A
R
E
N
K
P
D
L
I
L
M
D
I
Q
L
P
E
I
S
G
L
E
V
T
K
W
L
K
E
D
D
D
L
A
H
I
P
V
V
A
V
T
A
F
A
M
K
G
D
E
E
R
I
R
E
G
G
C
E
A
Y
I
S
K
P
I
S
V
V
H
F
L
E
T
I
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
98
HHSearch
83.72
32%
-145
- C2 -
-
2JBA
1
PHOB_ECOLI
A:
[3-117]
-
R
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
W
P
D
L
I
L
L
A
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
R
R
E
S
M
T
R
D
I
P
V
V
M
L
T
A
R
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
C
I
T
K
P
F
S
P
K
E
L
V
A
R
I
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
91
HHSearch
83.47
31%
-131
- C2 -
-
3DGE
-
?
C:
[3-118]
-
K
K
V
L
L
V
D
D
S
A
V
L
R
K
I
V
S
F
N
L
K
K
E
G
Y
E
V
I
E
A
E
N
G
Q
I
A
L
E
K
L
S
E
F
T
P
D
L
I
V
L
D
I
M
M
P
V
M
D
G
F
T
V
L
K
K
L
Q
E
K
E
E
W
K
R
I
P
V
I
V
L
T
A
K
G
G
E
E
D
E
S
L
A
L
S
L
G
A
R
K
V
M
R
K
P
F
S
P
S
Q
F
I
E
E
V
K
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
83.22
31%
-128
- C2 -
-
1MVO
-
PHOP_BACSU
A:
[5-119]
--
K
I
L
V
V
D
D
E
E
S
I
V
T
L
L
Q
Y
N
L
E
R
S
G
Y
D
V
I
T
A
S
D
G
E
E
A
L
K
K
A
E
T
E
K
P
D
L
I
V
L
D
V
M
L
P
K
L
D
G
I
E
V
C
K
Q
L
R
Q
Q
K
--
L
M
F
P
I
L
M
L
T
A
K
D
E
E
F
D
K
V
L
G
L
E
L
G
A
D
D
Y
M
T
K
P
F
S
P
R
E
V
N
A
R
V
K
A
I
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------