@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VS60: (2017-12-06 )
MYSTHRSKTICSKMARAFPGYSVMFFMHKKTLVLLLSTFCASTYIHAKTDCYPSSPPVVKQLDQVYYGMNNLRIFYTTSSDNALTFQQDKNLNHIPDYVENIAIQANSIRKAWSVLGYQDPLNSPRYKNDVKYIDIQIQKLNGLGLAYDEPHRHINNPLKKNACALIILISNNIPNLTTNSSLIAHELFHLYTYGYTMFKQPWLTESLAAWSEGIIRKDKLGIYGQRNLPENEEDFEKYVLQRTYRTSQLWNRLTTLIDRSDGKLFLPLSLMQQKYTDGQPVFQDKYLKGTLFIRKFLENLGRQDQKISVLNNWNLYHWNEIDQNSAHFNEQILDTLLITLESTVERNIEKNKFKNLLKKIVKNKKTN
Atome Classification :
(20 SA)
------------------------------.........--10...-.....20.....-----...30----------.........40------..----.......50........-----60........70........80....-....90........100.......110..--------.....--120...---....130.......140...-.-...150.......160--.........170.------.-.....180-------------.....-....-------190--.......200-........------210.......220-----.......230......----.240.......250..------.....260....--...270-.....--..----280.---.------.....------------290.......---300..---.-....310.......320.......330...---------..--..340.......350.---------......360......-------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------MYSTH
R
S
K
T
--
I
C
S
K
M
-
A
R
AFPG
Y
S
V
M
F
F
-----
M
HK
K
-----------
T
L
V
L
L
L
S
T
F
C
-------AS----
T
Y
I
H
AKTDCYPSS
P
P
V
V
-----
K
Q
L
D
Q
V
Y
YGMN
N
L
R
I
F
Y
TTSSD
N
A
L
T
-
F
QQDKNLNH
I
P
D
Y
V
E
N
I
A
I
Q
A
N
S
I
R
K
A
W
S
--------VLGYQ--DPLNSP---RYKND
V
K
Y
I
D
I
Q
I
Q
K
LNGLG-L-AYDE
P
H
R
HINNPLK----KN
A
C
A
L
I
I
L
ISNN------I-PNLTTN---------------
S
S
L
I
A
-
H
E
L
F
-------
H
L
Y
--
T
Y
G
Y
T
M
FKQ--PW
L
T
E
S
L
A
------
A
W
S
EGIIRKDKLG-----IYGQRNLPE
N
E
E
D
F
E
K
----
Y
V
L
Q
R
T
Y
R
T
S
Q
L
W
N
R
L
------
T
T
L
I
DRSD
G
K
L
F
--
L
P
L
S
L
M
-
Q
Q
KYT--DG----QPV
F
---
Q
------
D
KYL
K
------------
G
T
L
F
I
R
K
F
L
E
---
N
LGRQ---D-
Q
K
I
S
V
LNNWNLYHWNEIDQNSAH
F
N
E
Q
I
L
D
---------
T
L
--
L
I
T
L
E
S
T
V
E
RN
I
E
K
N
K
---------
F
K
N
L
L
K
K
I
V
KNKKTN-------------------------------------
110
Fugue
64.44
18%
64
- C1 -
-
5TF6
3
PRP24_YEAST
A:
[1-367]
------------------------------
M
L
T
R
N
R
E
L
T
T
V
L
V
K
N
L
-
P
K
S
Y
N
Q
N
K
V
Y
K
Y
-----
F
K
H
C
-----------
G
P
I
I
H
V
D
V
A
D
-------
S
L
KKN
F
R
F
A
R
I
E
F
A
R
Y
D
G
A
L
A
A
I
-----
T
K
T
H
K
V
V
-
G
Q
N
E
I
I
V
S
H
L
T
E
C
T
L
W
M
T
N
F
P
P
S
Y
T
Q
R
N
I
R
D
L
L
Q
D
I
N
V
V
A
L
S
I
R
---------------------
L
P
S
L
---
R
F
N
T
S
R
R
F
A
Y
I
D
V
T
S
K
E
D
A
R
-
Y
-
C
V
E
K
L
-----
N
G
L
K
----
I
E
G
Y
T
L
V
T
K
V
S
N
P
------
L
E
K
S
K
R
T
D
---------------
S
A
T
L
E
-
G
R
E
I
-------
M
I
R
--
N
L
S
T
E
L
L
D
E
--
N
L
L
R
E
S
F
E
------
G
F
--
G
S
I
E
K
I
N
I
P
------
A
G
Q
K
-----
E
H
S
F
N
N
----
C
C
A
F
M
V
F
E
N
K
D
S
A
E
R
A
------
L
Q
M
N
R
S
L
L
G
N
R
E
--
I
S
V
S
L
A
D
K
K
P
F
L
--
E
R
----
N
E
V
K
---
R
L
L
A
SRN
S
K
E
L
E
T
L
I
C
L
F
PLSDKV
S
P
S
L
I
C
Q
F
L
Q
EEI
H
I
N
E
K
---
D
I
R
K
I
L
L
V
S
D
F
N
G
A
I
I
I
F
R
D
S
K
F
A
A
K
M
L
M
I
L
N
-----------------
G
S
Q
F
Q
G
K
V
I
R
S
G
---------
T
I
N
D
M
K
R
Y
Y
N
N
Q
Q
N
--------------------------------------
112
Fugue
59.93
17%
10
* C9 *
-
5BZ1
1
MPT5_YEAST
A:
[3-399]
--------------VEISALPLRDLD
Y
I
K
L
A
T
D
Q
F
G
C
R
F
--
L
Q
K
K
L
-
E
T
P
S
E
S
N
M
V
R
D
L
-----
M
Y
E
Q
-----------
I
K
P
F
F
L
D
L
I
L
DP-----
F
G
----
N
Y
L
V
Q
K
L
C
D
Y
L
T
A
E
Q
K
T
-----
L
L
I
Q
T
I
Y
P
N
V
F
Q
I
S
I
----------
N
-
Q
Y
G
T
R
S
L
Q
K
I
I
D
T
V
D
N
-
E
V
Q
I
D
L
I
I
K
G
F
S
------------------------
Q
E
F
T
S
I
E
Q
V
V
T
L
I
N
D
L
N
G
N
H
-
V
-
I
Q
K
C
I
F
K
F
--
S
P
S
K
----
F
G
F
I
I
D
A
I
V
E
Q
N
N
------
I
-
I
T
I
S
T
H
---------------
K
H
--
G
-
C
C
V
L
-------
Q
K
L
--
L
S
V
C
T
L
Q
Q
I
--
F
K
I
S
V
K
I
V
------
Q
F
L
P
G
L
I
N
-
D
Q
F
G
-----
N
Y
I
I
Q
F
L
L
D
I
K
E
L
D
F
Y
----
L
L
A
E
L
F
N
R
L
S
N
E
L
C
Q
L
S
C
LK
F
S
S
N
V
V
E
K
F
I
K
K
L
F
--
R
I
I
T
G
F
-
I
V
N
N
V
--
A
S
----
D
D
V
I
N
A
S
M
------
N
I
L
L
T
------------
T
I
D
I
F
T
V
N
L
N
---
V
L
I
R
D
---
N
-
F
G
N
Y
A
L
Q
T
L
L
D
V
K
N
Y
S
P
L
L
N
Y
G
N
F
C
N
D
F
S
L
---------
K
I
G
N
L
I
V
L
T
K
E
L
L
P
S
I
K
T
T
S
---------
Y
A
K
K
I
K
L
K
V
K
A
Y
A
E
A
T------------------------------------
109
Fugue
53.73
17%
24
- C2 -
-
5K5S
5
CASR_HUMAN
A:
[20-598]
YGPD
Q
R
A
Q
K
K
G
D
I
I
L
G
G
L
F
PIHFGVAAKDQ
D
L
K
S
R
P
E
S
V
--
E
C
I
R
Y
N
F
R
G
F
R
W
L
Q
A
M
I
F
-----
A
I
E
E
I
N
S
SPALLPN
L
T
L
G
Y
R
I
F
D
T
C
NT
V
S
K
A
L
E
A
----
T
L
S
F
V
A
Q
N
K
I
P
S
T
I
A
V
V
GATG
S
G
V
S
T
A
V
A
N
L
L
G
L
F
Y
I
P
Q
V
S
Y
A
S
S
S
R
L
-
L
S
N
K
N
Q
F
K
S
F
L
R
T
I
P
N
D
E
H
Q
A
T
A
M
A
D
I
I
E
Y
F
RWN
W
V
G
T
I
A
A
D
--
D
D
Y
G
R
P
G
I
E
K
F
R
E
E
A
E
E
R
D
I
C
I
D
F
S
E
L
I
S
Q
Y
-
S
D
E
E
E
I
Q
H
V
V
E
V
I
Q
----
N
S
T
A
K
V
I
V
V
F
S
S
G
PDL
E
P
L
I
-
K
E
I
V
R
R
NITG
K
I
W
L
A
S
EAWAS
S
S
L
I
A
M
P
Q
Y
F
-------
H
V
V
GG
T
I
G
F
A
L
K
A
G
Q
I
P
G
F
R
E
F
L
K
K
VHPRK
S
V
H
N
G
F
A
K
E
F
W
E
E
-----
T
F
N
C
H
P
L
C
T
G
D
E
N
I
N
S
VETP
Y
I
D
Y
T
H
L
R
I
S
Y
N
V
Y
L
A
------
V
Y
S
I
A
H
A
L
Q
D
I
Y
T
C
L
P
G
R
G
L
-
F
T
N
G
S
C
A
D
I
----
K
K
V
E
---
A
------
W
Q
V
L
K
------------
H
L
R
H
L
-
Q
F
T
N
---
N
M
G
E
Q
V
T
F
D
-
E
C
G
D
L
V
G
N
Y
S
I
I
N
W
H
L
S
P
E
D
G
S
I
V
F
K
E
V
G
Y
Y
N
VYAKKGE
R
L
--
F
I
N
E
E
K
I
L
W
S
G
F
S
R
E
V
P
F
S
N
CSRDC
L
A
G
T
R
K
G
I
I
E
G
E
P
T
C
C
F
E
C
V
E
C
PDGEYSDETDAS
A
C
N
K
C
P
DD
F
W
S
N
ENHTSC
111
Fugue
52.38
14%
-37
* C7 *
-
4KPP
3
?
A:
[2-396]
-------------------------------
D
F
T
K
E
K
F
Q
--
L
L
A
I
S
-
S
L
T
L
P
W
L
I
S
L
A
F
N
Y
H
H
P
A
L
T
Q
-----------
T
L
L
S
G
L
A
V
V
S
-------
A
S
----
F
L
I
S
W
A
A
E
T
A
E
M
D
V
P
-------
R
S
F
S
L
A
I
V
A
L
L
A
V
L
P
E
Y
A
V
D
G
Y
F
A
W
K
-
A
G
S
V
G
G
E
Y
V
H
Y
A
T
A
N
M
T
G
A
N
R
L
L
I
G
I
G
W
S
--------
L
V
A
F
I
A
F
R
T
L
K
S
K
---
E
V
E
L
D
-
D
G
I
R
L
E
I
F
F
L
F
L
A
T
-
L
Y
A
F
T
L
P
L
K
G
H
I
S
P
F
D
A
L
V
F
V
S
L
Y
A
I
Y
I
Y
L
S
T
K
------
A
-
E
R
E
E
V
E
---------------
V
G
G
V
P
-
A
Y
L
C
S
LK
T
E
T
R
R
L
S
--
V
V
V
L
F
L
F
A
G
--
F
T
I
L
M
S
V
E
------
A
F
S
E
G
L
L
E
T
A
R
I
A
GID
E
F
L
A
V
Q
W
I
A
P
L
A
S
E
S
P
E
L
----
I
V
A
I
Y
F
V
R
R
F
R
V
S
A
S
M
------
N
A
L
I
S
S
K
V
N
Q
W
T
--
L
L
I
G
T
I
-
A
I
I
Y
S
--
I
S
A
FKL
Q
S
L
P
---
L
------
D
A
R
Q
S
------------
E
E
V
L
L
T
A
A
Q
S
---
L
F
A
V
A
I
L
L
D
-
L
K
I
S
W
K
E
A
S
A
L
F
L
L
F
I
V
Q
L
L
F
P
G
V
E
V
R
Y
I
I
---------
S
A
--
I
Y
I
I
L
S
L
P
I
L
F
A
K
R
K
E
---------
I
V
E
S
F
R
T
V
K
R
L
I
S
L
E
-------------------------------------
30
PsiBlast_CBE
43.44
42%
-75
- C10 -
-
3FFG
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
43.30
42%
-89
- C10 -
-
2W3I
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
PsiBlast_CBE
42.78
42%
-80
- C10 -
-
3TK6
1
?
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
PsiBlast_CBE
42.73
42%
-82
- C10 -
-
2P3T
1
?
B:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
PsiBlast_CBE
42.66
42%
-70
- C10 -
-
2RA0
1
?
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.43
42%
-64
- C10 -
-
2BQ7
1
?
B:
[206-233]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.38
42%
-61
- C10 -
-
2BQW
1
?
B:
[206-233]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
42.31
42%
-62
- C10 -
-
5K0H
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
42.00
42%
-69
- C10 -
-
3M36
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
PsiBlast_CBE
41.80
42%
-69
- C10 -
-
2P3U
1
?
B:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
41.72
42%
-61
- C10 -
-
2P16
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
105
PsiBlast_CBE
41.71
42%
-52
- C10 -
-
4BTT
1
?
F:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
92
PsiBlast_CBE
41.67
42%
-69
- C10 -
-
2VVC
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
41.64
42%
-65
- C10 -
-
3CEN
1
?
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
87
PsiBlast_CBE
41.52
42%
-55
- C10 -
-
2VWM
1
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
65
PsiBlast_CBE
41.51
42%
-90
- C10 -
-
2EI6
1
?
A:
[191-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
F
K
D
--
T
Y
F
V
T
G
I
V
------
S
W
G
E
G
C
A
R
K
G
K
Y
G
-----
I
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------