@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSZ2: (2017-12-11 )
MSVLEEMSVCGQLWSKRGMMGIQRSITNFKLFKVIKKPDGQDQAFQFNYLIEESNMQTNLANQLNKHNSQEFLVGDVVVLTEECRNFKSNDLFEVKNKTLTRLWTIKSENHLILVSSKEIRTATVAELNAKRRLTKAEQALAEVS
Atome Classification :
(20 SA)
---------------------------------------------------------........------.10....--------....20........--------30........40........50----......--..60..---.--.....70.---.......80.--.......90.----.......100----.........110---------------.......120.......130.......140...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------M
S
V
L
E
E
M
S
------
V
C
G
Q
L
W
S
--------KRGM
M
G
I
Q
R
SIT
N
F
--------
K
L
F
K
V
I
KKPDGQDQ
A
F
Q
F
N
Y
L
I
----EESNMQ--
T
N
L
A
N
Q
---
L
--
N
KHNSQE
F
---
L
VG
D
V
V
V
L
T
E
--
E
C
RNFKSND
L
----
F
E
V
KNK
T
L
------
T
R
L
W
T
IKSE
N
H
L
---------------
I
L
V
SSKE
I
R
T
A
T
V
A
E
L
N
A
K
RR
L
T
K
A
E
Q
A
L
AEVS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
59.60
18%
28
- C2 -
-
5LG9
-
?
A:
[1-156]
-----------------------------------------------------------------------------
E
--------
E
K
G
A
Y
L
V
F
D
N
A
S
N
G
--------
T
L
F
I
V
W
K
K
E
K
V
E
N
-
A
L
M
F
I
K
P
T
KEVP
E
F
K
F
V
N
--
R
N
G
K
N
E
---
L
I
R
N
L
Q
S
D
K
K
L
---
F
Y
S
G
I
C
Q
F
V
K
--
E
A
K
D
I
K
G
K
L
T
L
L
Q
H
F
D
S
S
F
P
I
K
------
V
D
L
Y
F
L
K
G
S
K
V
M
P
L
N
TGEPFVVQDID
A
M
S
V
L
P
K
G
S
S
S
L
K
V
K
T
M
A
K
D
M
F
V
S
R
G
N
T
E
G
A
S
I
S
F---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
54.06
21%
30
- C2 -
-
5DBJ
1
?
D:
[5-441]
SDHDYDVVIIGGGPAGSTMASYLAKAGVKCAVFEKELFEREHVGESLVPATTPVLLE
I
G
V
M
E
K
I
E
KANFPK
K
F
G
A
A
W
T
SADSGPED
K
M
G
F
Q
G
L
D
H
D
F
R
S
A
--------
E
I
L
F
N
E
R
K
Q
E
G
V
D
R
D
F
T
F
H
--
V
----
D
R
G
K
F
D
--
R
I
L
L
E
H
---
A
--
G
S
L
G
A
K
V
F
QGV
E
I
A
D
V
E
F
L
S
--------
P
G
N
V
I
----
V
N
A
K
L
G
K
-------------------------------------
R
S
V
E
I
K
A
K
M
V
V
D
A
S
G
R
N
V
L
L
G
R
R
L
G
L
R
E
K
D
PVFNQFAIHSWFDNFDRKSATQSPDKVDYIFIHFLPMTNTWVWQIPITETITSVGVVTQKQNYTNSDLTYEEFFWEAVKTRENLHDALKASEQVRPFKKEADYSYGMKEVCGDSFVLIGDAARFVDPIFSSGVSVALNSARIASGDIIEAVKNNDFSKSSFTHYEGMIRNGIKNWYEFITLYYRLNILFTAFVQDPRYRLDILQLLQGDVYLEVLDKMREIIAAVESDPEHLWHKYLG
1
PsiBlast_PDB
50.65
30%
43
- C2 -
-
2A9I
-
IRAK4_MOUSE
A:
[16-100]
------------------------------------------------------------------------------------------
V
G
I
L
R
K
L
S
D
F
IDPQE
G
W
K
K
L
A
V
A
I
K
K
P
S
G
D
D
R
Y
N
Q
F
H
I
R
R
----
F
E
A
L
L
Q
--
T
G
L
S
P
T
C
E
L
L
--
F
D
W
G
T
T
N
C
---
T
V
G
D
L
V
D
L
L
V
--
Q
I
E
L
F
A
P
A
T
L
----
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
47.61
16%
-2
- C2 -
-
5BY5
4
ECTC_SPHAL
A:
[1-115]
---------------------------------------------------------
M
I
V
--------------
R
N
L
G
--------
D
I
R
K
T
D
R
N
V
R
S
D
G
W
--------
A
S
A
R
M
L
L
K
D
D
G
M
G
F
S
F
H
V
T
T
L
F
----
A
G
S
E
L
R
--
M
H
Y
Q
N
H
------------------
L
E
A
V
L
V
L
K
G
T
G
T
I
E
D
L
A
T
G
E
V
----
H
A
L
R
P
G
V
---------
M
Y
A
L
D
D
H
D
R
H
---------------
I
V
R
P
E
T
D
I
L
T
A
C
V
F
N
----
P
P
V
T
G
R
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
47.14
19%
29
- C2 -
-
1TTW
-
?
A:
[3-120]
-------------------------------------------------------T
Y
S
S
L
L
E
E
F
A
------------
T
--------
E
L
G
L
E
E
I
E
T
N
E
L
G
H
--------
G
A
V
T
I
----------------------
D
K
I
W
V
--
V
H
L
A
P
I
---
N
--
E
K
------------
E
L
V
A
F
M
R
--
A
G
I
L
T
G
Q
S
Q
L
----
Y
D
I
L
R
K
N
L
FSPLSG
V
I
R
C
A
L
D
K
D
D
H
W
---------------
L
L
W
S
Q
L
N
I
N
D
T
S
G
T
Q
L
--
A
S
V
L
T
S
L
V
D
K
A
V
T
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
HHSearch
46.23
38%
-372
* C2 *
-
4ZMI
-
TAZ1_SCHPO
A:
[181-193]
----------------------------------------------------------------
V
------
V
C
G
Q
V
W
K
--------
S
Q
K
I
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
40.11
32%
-
- C- -
-
4IPD
-
RFA1_HUMAN
A:
[59-111]
--------------------------------------------------------------------------------------------------------------------------
A
T
Q
L
N
P
L
V
----
E
E
E
Q
L
S
--
S
N
C
V
C
Q
---
I
--
H
R
F
I
V
N
T
L
---
K
D
G
R
R
V
V
I
L
M
--
E
L
R
V
L
K
S
A
E
A
----
V
G
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
39.08
32%
-84
- C1 -
-
2JQD
-
AN32A_MOUSE
A:
[72-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
N
R
---
I
S
G
D
L
E
V
L
A
E
--
K
C
P
N
L
K
H
L
N
L
----
S
G
N
K
I
K
D
L
------
S
T
I
E
P
L
K
K
L
E
N
L
------------------
K
S
L
D
L
F
N
C
E
V
T
N
L
N
A
Y
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
35.89
10%
-84
- C3 -
-
1GD7
-
?
A:
[1-109]
---------------------------------------------------------
M
T
P
L
E
A
F
Q
------
I
----------------------
L
D
L
R
V
G
--------
R
V
L
R
A
E
P
H
E
K
A
R
K
P
S
Y
K
L
W
V
D
L
----
G
P
L
G
-
V
--
K
Q
S
S
A
Q
---
I
--
T
E
L
Y
R
P
E
D
---
L
V
G
R
L
V
V
C
A
--------
V
N
L
--------------------
G
A
K
R
V
A
G
F
L
S
E
V
---------------
L
V
L
G
----
V
P
D
E
A
G
R
V
V
L
L
A
P
D
-
R
E
V
P
L
G
G
K
V
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
34.53
32%
-119
- C- -
-
4IPG
-
RFA1_HUMAN
A:
[59-111]
--------------------------------------------------------------------------------------------------------------------------
A
T
Q
L
N
P
L
V
----
E
E
E
Q
L
S
--
S
N
C
V
C
Q
---
I
--
H
R
F
I
V
N
T
L
---
K
D
G
R
R
V
V
I
L
M
--
E
L
R
V
L
K
S
A
E
A
----
V
G
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
33.72
54%
-364
- C3 -
-
4XAX
3
?
B:
[1-13]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
---
R
P
G
D
K
V
V
L
P
P
--
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
32.98
31%
77
- C2 -
-
1WH4
-
IRAK4_MOUSE
A:
[23-94]
------------------------------------------------------------------------------------------
V
G
I
L
R
K
L
S
D
F
IDPQE
G
W
K
K
L
A
V
A
I
K
K
P
S
G
D
D
R
Y
N
Q
F
H
I
R
R
----
F
E
A
L
L
Q
--
T
G
K
S
P
T
C
E
L
L
--
F
D
W
G
T
T
N
C
---
T
V
G
D
L
V
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
31.08
28%
33
- C5 -
-
2WW1
-
?
A:
[158-211]
-------------------------------------------------------------
E
E
N
K
------
I
I
G
--
Y
T
--------
T
R
N
S
G
G
V
P
E
---
N
F
--------
K
N
Y
F
I
I
E
F
----
D
K
P
F
T
Y
K
A
T
V
----
E
N
G
N
L
Q
--
E
N
V
A
E
Q
---
T
--
T
D
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
30.79
35%
-23
- C2 -
-
5GL7
-
?
A:
[393-438]
-------------------------------------------------------------------------------------------
G
I
P
A
D
I
W
R
F
--------
Y
L
L
Y
I
--
R
P
E
G
Q
D
S
A
F
S
W
T
D
L
L
----
L
K
N
N
S
E
LL
N
N
L
G
N
F
---
I
--
N
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
30.57
28%
56
* C5 *
-
2WVZ
-
?
A:
[158-211]
-------------------------------------------------------------
E
E
N
K
------
I
I
G
--
Y
T
--------
T
R
N
S
G
G
V
P
E
---
N
F
--------
K
N
Y
F
I
I
E
F
----
D
K
P
F
T
Y
K
A
T
V
----
E
N
G
N
L
Q
--
E
N
V
A
E
Q
---
T
--
T
D
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
30.42
28%
41
- C5 -
-
2WW0
-
?
A:
[158-211]
-------------------------------------------------------------
E
E
N
K
------
I
I
G
--
Y
T
--------
T
R
N
S
G
G
V
P
E
---
N
F
--------
K
N
Y
F
I
I
E
F
----
D
K
P
F
T
Y
K
A
T
V
----
E
N
G
N
L
Q
--
E
N
V
A
E
Q
---
T
--
T
D
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
30.09
38%
-244
* C3 *
-
3LHD
-
TRMI_PYRAB
B:
[1-13]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
---
R
E
G
D
K
V
V
L
V
D
--
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
29.70
28%
47
- C5 -
-
2WW3
-
?
A:
[158-211]
-------------------------------------------------------------
E
E
N
K
------
I
I
G
--
Y
T
--------
T
R
N
S
G
G
V
P
E
---
N
F
--------
K
N
Y
F
I
I
E
F
----
D
K
P
F
T
Y
K
A
T
V
----
E
N
G
N
L
Q
--
E
N
V
A
E
Q
---
T
--
T
D
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
29.61
28%
40
- C5 -
-
2WVX
-
?
B:
[158-211]
-------------------------------------------------------------
E
E
N
K
------
I
I
G
--
Y
T
--------
T
R
N
S
G
G
V
P
E
---
N
F
--------
K
N
Y
F
I
I
E
F
----
D
K
P
F
T
Y
K
A
T
V
----
E
Q
G
N
L
Q
--
E
N
V
A
E
Q
---
T
--
T
D
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
29.48
31%
70
- C2 -
-
5FXP
1
?
A:
[393-429]
--------------------------------------------------------------------------------------------------------------
F
S
P
V
S
A
P
D
G
R
E
A
M
K
Q
F
E
-----------
M
V
--
R
N
R
A
N
E
---
Y
--
N
K
D
Y
A
A
Q
F
---
I
I
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------