@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSZ7: (2017-12-11 )
MTKKNNAPELHKYRGLTSTEQMVIHQMLISYVREENCRFNIIMTGTAEPYNLVKLTSINFENEASAIWVHFETITGEQIALPIDFLSRIEFSGQQEI
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------.......-----..10---.......---..20.-....---..--.30..-..--------....40..-......------50----......----.---------..60....----.-----...70-----......-------...80..-...-..--..-----90....--..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------MTKKNNA-----P
E
L
----
H
K
YRGLT---
S
T
E
Q
M
-
V
I
H
Q
---
M
L
--
I
S
Y
V
R-EE--------N
C
R
F
N
I
I
M
-TGTAEP------
Y
-----
N
L
V
K
L
T
----
S
---------INFENEA
S
----
A
-----
I
W
V
H
------
F
E
TITG-------
E
Q
I
A
-L
P
-
I
D
F
-
L
S
--
R
I-----EFSGQQ--EI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
63.95
22%
-30
* C8 *
-
5IC7
-
?
A:
[58-422]
--------------------------------------------------------------------------------------------------------R
K
L
R
P
ETID
I
Q
R
T
R
D
I
-----
P
D
T
----
H
K
----
A
---
A
I
S
S
L
-
A
F
H
P
-------------------------
R
Y
P
I
L
L
-
S
S
S
--
T
------
S
-----
S
I
M
Y
L
H
----
K
---------
L
D
----
A
S
----
A
-----
Y
P
T
P
------
N
P
L
L
T
S
-------
V
H
V
K
-
R
T
---
D
-
L
R
--
R
A
-----
A
F
V
G
P
D
GG
E
I
I
F
A
G
RRR
Y
F
H
C
W
N
LSSG
L
V
K
K
V
S
K
IQGHQKEQRTMER
F
R
V
S
PCGR
Y
M
A
L
V
A
S
D
KKG
G
G
M
L
N
I
I
NVGTMQWI
A
Q
A
R
I
D
G
RHGVA
D
F
A
W
WSDGN
G
L
T
I
A
G
RDG
Q
V
T
E
W
S
MITRRTV
G
I
W
R
DEGT
V
M
A
L
G
G
R
NGPAELGGDR
W
V
A
I
G
S
NSG
I
L
N
V
Y
DRNDLIEIRIKK
Y
P
T
P
TRVFEQLTTSIS
V
V
A
F
S
PDGQ
L
L
A
F
G
S
QHKKDA
L
R
L
V
H
L
PSCTVYRNWPTEQ
T
P
L
G
RVT
A
I
A
F
S
SKSD
V
L
A
V
G
N
DVG
R
V
R
L
W
E
I
R
G
18
Fugue
62.22
18%
-12
- C7 -
-
2A10
-
CCMK4_SYNY3
A:
[4-107]
------------------------------------------------------------------------------------------------------------------
Q
S
A
V
G
S
-----
I
E
T
----
I
G
F
P
G
I
L
---
A
A
A
D
A
-
M
V
K
A
G
RI
T
I
--
V
G
Y
I
R
-
A
G
--------
S
A
R
F
T
L
N
I
-
R
G
D
V
Q
E
------
V
-----
K
T
A
M
A
A
----
G
---------
I
D
A
I
N
R
T
E
GADV
K
-----
T
W
V
I
------
I
P
R
P
H
E
-------
N
V
V
A
V
L
P
-
I
D
F
-
S
P
--
E
V
-----
E
P
F
R
E
A
--
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.63
18%
-42
- C7 -
-
1UGJ
-
A:
[1-141]
------------------------------------------------------------------------------------G
S
S
G
S
S
G
P
R
L
Y
K
E
P
S
AKSN
K
F
I
I
H
N
A
L
S
H
C
C
L
A
G
K
V
-----
N
E
P
----
Q
K
N
R
I
L
E
---
E
I
E
K
S
-
K
A
N
H
---
F
L
--
I
L
F
-
R
-
D
S
--------
S
C
Q
F
R
A
L
Y
-
T
L
S
G
E
T
------
E
-----
E
L
S
R
L
A
GYGP
R
---------
T
V
T
P
A
M
V
E
----
G
-----
I
Y
K
Y
NSDRK
R
F
T
Q
I
P
A
-------
K
T
M
S
-
M
S
-
V
D
A
-
F
T
I
Q
G
H
-----
L
W
Q
S
K
K
--
S
G
P
S
S
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
54.58
22%
29
- C2 -
-
4JDN
1
?
A:
[6-149]
------------------------------------------------------------------------------------------------K
A
F
N
N
F
P
I
T
N
KIQCN
G
L
F
T
P
S
N
I
E
TLLGG
T
E
I
----
G
K
F
T
V
T
P
---
K
S
S
G
S
M
F
L
V
S
---
A
D
--
I
I
A
S
R
M
E
G
--------
G
V
V
L
A
L
V
R
-
E
G
D
S
K
P
C
A
I
S
Y
G
Y
S
SG
V
P
N
L
C
S
L
R
----
T
S
I
T
N
T
G
L
T
P
T
T
Y
S
L
R
V
G
----
G
LE
S
G
V
V
W
V
N
------
A
L
S
-
N
G
-------
N
D
I
--
L
G
-
I
T
N
-
T
S
--
N
V
-----
S
F
L
E
V
I
--
P
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
47.33
21%
-425
- C3 -
-
4JPB
-
CHEW_THEMA
W:
[13-36]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
S
------
F
E
-
I
D
E
-------
Q
A
L
A
-
F
D
-
V
D
N
-
I
E
--
M
V
-----
I
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
45.63
16%
42
* C7 *
-
1V31
-
A:
[1-93]
---------------------------------------------------------------------------------------------------------GSSGSS
G
V
P
E
K
F
K
L
S
-----
T
A
L
----
M
D
V
L
G
I
E
---
V
E
T
R
P
-
R
I
I
A
---
A
I
--
W
H
Y
V
K
-
A
R
--------
K
L
Q
------------------------
N
P
N
D
P
S
----
F
---------
F
N
C
D
A
A
L
Q
----
K
-----
V
F
-
G
------
E
E
K
L
K
F
-------
T
M
V
S
-
Q
K
-
I
S
H
H
L
S
--
P
P
-----
P
P
S
G
P
S
--
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
44.14
17%
-165
- C8 -
-
3K8R
1
?
A:
[26-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
A
----
K
---------
A
R
Y
D
R
S
S
A
----
R
-----
V
I
V
D
------
L
E
--
N
G
-------
C
T
F
A
-
F
P
-
P
R
L
-
A
Q
--
G
L
-----
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
42.78
19%
27
- C6 -
-
4B4P
-
?
A:
[6-147]
-----------------------------------------------------------------------------------------------------S
A
Q
V
T
G
T
L
L
G
T
G
K
T
N
T
T
Q
M
-----
P
A
L
Y
T
W
Q
H
Q
I
Y
N
V
N
F
I
P
S
S
S
G
T
-
L
T
C
Q
---
A
G
--
T
I
L
V
W
-
K
N
G
R
E
T
Q
Y
A
L
E
C
R
V
S
I
H
H
S
S
G
S
I
N
E
------
S
-----
Q
W
G
Q
Q
S
----
Q
---------
V
G
F
G
T
A
C
G
----
N
--------
K
------
K
C
R
F
T
G
-------
F
E
I
S
-
L
R
-
I
P
P
-
N
A
--
Q
T
YPLSG
D
L
K
G
S
F
--
S
L
T
N
KE
V
N
W
S
A
S
I
Y
V
P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
36.52
17%
20
- C7 -
-
3RFY
-
CYP38_ARATH
A:
[78-433]
G
G
I
L
L
V
A
N
P
VIPD
V
S
V
L
I
S
GPPIKD
P
E
A
L
L
R
Y
A
LPIDN
K
A
I
R
E
V
Q
K
P
L
ED
I
T
D
S
L
K
IAGV
K
A
L
D
S
V
E
R
N
V
R
Q
A
S
R
T
L
QQGKSIIVAGFAESK
K
D
H
G
N
E
M
I
E
K
L
E
A
G
M
Q
D
M
L
KI
V
E
D
R
K
R
D
-----
A
V
A
----
P
K
Q
K
E
I
L
---
K
Y
V
G
G
-
I
E
E
D
---
M
V
DG
F
P
Y
E
V
-
P
E
--------
E
Y
R
N
M
P
L
L
-
K
G
R
A
S
V
------
D
-----
M
K
V
K
I
K
----
D
----------
N
P
N
I
E
D
C
----
V
-----
F
R
I
V
------
L
D
G
Y
N
A
-------
P
V
T
A
-
G
N
F
V
D
L
-
V
E
--
R
H
-----
F
Y
D
G
-
M
--
E
I
Q
R
S
D
G
F
V
VQT
G
D
P
E
G
P
A
E
G
F
I
D
P
S
T
E
K
TRTVPLEIMVTGEKT
P
F
Y
G
S
T
LEELG
L
Y
K
A
Q
V
V
I
P
F
N
A
F
G
T
M
A
M
A
R
EEF
E
N
D
S
GSSQVFW
L
L
K
E
S
E
L
T
PSNSNILDGR
Y
A
V
F
G
YVTDNEDFLADLKVGDVIE
S
I
Q
V
VSGLENLANPSY--------------------------------------------------------------------------------------------------------------
8
HHSearch
31.25
32%
-120
* C9 *
-
1ZRI
-
OMP_RAT
A:
[41-62]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
-------
E
K
L
L
-
R
P
-
A
E
S
-
V
Y
--
R
L
-----
D
F
I
Q
Q
Q
--
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.76
32%
-146
- C9 -
-
1F35
-
OMP_MOUSE
B:
[40-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
-------
E
K
L
I
-
R
P
-
A
E
S
-
V
Y
--
R
L
-----
D
F
I
Q
Q
Q
--
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
28.18
18%
-174
- C8 -
-
2X8N
-
?
A:
[25-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
----
S
---------
V
Q
Y
R
S
E
E
G
----
V
-----
I
V
F
I
------
L
A
--
N
D
-------
R
E
L
K
-
F
R
-
P
D
D
-
L
Q
--
A
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
25.28
11%
-88
- C1 -
-
2EIS
1
?
A:
[102-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
G
----
F
-----
V
L
V
A
------
V
D
E
-
R
G
-------
R
P
S
P
-
V
P
-
P
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
24.07
32%
54
- C4 -
-
2Q97
1
?
T:
[55-73]
-----------------------------------------------------------------------------------------------------------------------------
L
D
L
----
R
K
Y
E
N
L
N
---
T
E
Q
Q
K
-
A
Y
E
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
23.97
42%
87
- C10 -
-
4QQX
1
?
A:
[239-294]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
E
D
------
F
-----
L
L
E
R
L
T
----
S
---------
L
P
A
D
G
S
A
S
----
A
-----
L
R
A
H
------
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
23.76
42%
101
- C10 -
-
4QQZ
1
?
A:
[239-294]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
E
D
------
F
-----
L
L
E
R
L
T
----
S
---------
L
P
A
D
G
S
A
S
----
A
-----
L
R
A
H
------
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
23.27
42%
80
* C10 *
-
4QQW
1
?
A:
[239-286]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
E
D
------
F
-----
L
L
E
R
L
T
----
S
---------
L
P
A
D
G
S
A
S
----
A
-----
L
R
A
H
------
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
23.26
42%
95
- C10 -
-
4QQY
-
?
A:
[239-301]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
E
D
------
F
-----
L
L
E
R
L
T
----
S
---------
L
P
A
D
G
S
A
S
----
A
-----
L
R
A
H
------
F
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
22.58
14%
-
- C5 -
-
4CY4
-
CORA_METJA
E:
[7-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
A
K
D
G
S
I
------
V
-----
E
P
K
-
L
D
----
E
---------
I
-
S
F
E
D
Y
R
----
L
-----
I
W
I
D
------
C
Y
D
P
K
D
EELYKLS
K
K
I
G
-
I
S
-
V
S
D
-
L
Q
--
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
19.86
29%
158
- C10 -
-
4Z8U
-
?
B:
[39-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
E
R
------
F
-----
D
L
E
E
L
E
----
K
---------
I
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------