@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTT5: (2017-12-15 )
MMSSMSLTDYHATCPKAQKVKKGRNKFNASKIKLDGMTFDSTKEYKRYIELKALQQRGEIKELQHHTKFELAPSVKIEEEKRKKPALRYFADFTYFTAAGDYVVEDVKSIATRKLPSYRNKKHLMKTVHNIDVREV
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.-........10........20....-------....30---....-....40.-------------......--.50..----...-----------...60..----...----..-.70......-..80....-----.....90......-..--100-....-------...-----.-----110.......120.......130-----.-.....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M-MSSMSLTDYHATCP
K
A
Q
K
V
K
KGRN-------KFNA
S
K
---
I
K
LD-GMTFD
S
T
-------------
K
E
Y
K
R
Y
--
I
E
L
K
A
----
L
Q
Q-----------RG
E
I
K
E
L
----
Q
H
H----TK-FELAPS
V
K
I
-
E
E
E
-KRKK-----
P
A
L
R
Y
FA
D
F
T
Y
F
T-AA--
G
D
--
Y
V
V
E
-------
D
V
K
-----
S
-----
I
A
T
RKLPSYR
N
K
K
H
L
M
K
T
V
HN-------I-DVREV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
61.44
24%
23
- C5 -
-
1TDP
-
CB2I_CARML
A:
[1-111]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
K
S
Q
T
L
Y
L
N
L
S
E
A
Y
K
D
P
E
V
K
A
--
N
-------
E
F
L
S
K
L
---
V
V
Q
C
-
A
G
K
L
T
A
S
-------------
N
S
E
N
S
Y
--
I
E
V
I
S
----
L
L
S
-----------
R
G
I
S
S
Y
Y
----
L
S
H
----
K
R
---
I
I
P
S
-----------------
S
M
L
T
I
Y
T
Q
I
Q
K
D
I
-
K
N
--
G
N
---------------------------
I
D
T
E
K
L
R
K
Y
E
I
A
K
G
L
M
S
V
P
Y
I
-------
Y
-
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
53.80
20%
109
- C3 -
-
4RM6
-
HXUA1_HAEIN
A:
[2-817]
ARDLPQGSSVVV
G
E
A
N
V
S
T
I
GN
K
M
T
I
DQKTP
T
T
Q
I
D
W
H
S
F
D
I
G
QN
K
E
V
E
F
KQPDAN
S
V
A
Y
N
R
V
TGGNASQIQ
G
K
L
T
A
N
G
K
V
Y
L
A
N
PN
G
V
I
I
T
QG
A
E
I
N
V
A
G
L
F
A
T
TKDLERISENN
K
F
T
R
K
L
K
DGQVV
K
E
G
Q
V
I
N
K
G
K
I
K
A
KD
F
V
V
L
N
G
D
K
V
I
N
E
G
E
I
D
ATNN
G
K
V
Y
LSSG
Y
N
F
T
F
T
LS
D
S
S
I
S
VALEDN
A
-
V
Q
S
I
V
Q
N
E
G
I
I
K
A
G
D
I
T
L
N
A
K
G
R
N
-------
Q
A
L
D
S
L
---
V
M
N
N
-
G
-
V
L
E
A
T
-------------
K
V
S
N
K
N
G
K
V
V
L
S
A
D
D
V
Q
L
N
N
-----------
K
S
D
I
K
G
E
----
S
-
E
----
V
V
-
F
T
N
E
N
K
I
K
I
-
T
S
Q
-
T
G
S
---------
K
V
T
S
P
K
I
N
F
T
-
G
K
--
S
V
--
N
I
N
G
-------
D
F
G
-----
R
-----
D
D
S
K
--
A
H
Y
N
E
E
H
K
R
L
D
T
E
V
N
-------
I
-
D
V
P
D
N
E
N
I
R
I
A
EKDNTD
S
F
I
Q
T
G
A
L
S
S
L
L
A
N
N
G
K
V
N
L
K
G
K
D
V
N
I
S
G
RIHIDSFRG
S
D
S
L
LKLTNQ
G
H
I
K
I
N
H
A
D
I
H
S
T
G
R
L
F
F
I
T
S
L
Q
NEKDSQ
S
D
I
T
I
T
D
S
K
I
N
LGN
G
A
M
G
L
G
RSLDKENCDNQRWCRTETSQRK
K
F
D
V
H
M
R
N
V
V
F
D
QVD
D
V
V
V
A
GGFK
K
V
N
L
D
N
I
V
A
T
G
K
T
N
F
Y
I
D
GGVSRNNSRYEYGVLD
L
D
K
R
T
L
LSELDQRRRR
W
K
Y
Y
ND
L
D
L
D
M
N
K
A
YWHRFDMRSTIKD
T
E
I
N
I
S
N
S
K
I
N
L
K
N
G
F
V
H
L
L
A
E
K
I
K
L
D
N
S
K
I
D
I
T
F
D
K
D
NSQDISTQINR
L
G
M
N
G
K
V
S
M
V
N
S
H
I
K
I
V
G
D
EKSDISAKAPYAT
M
F
L
I
G
E
L
I
G
E
K
S
S
I
F
V
K
S
HQGYT
F
R
T
D
GD
T
K
I
A
G
KNSKDD
L
K
I
T
A
I
N
TGGRTGKEVIINGAPGSI
A
N
M
A
F
T
I
G
D
N
A
N
T
K
T
T
I
E
N
A
D
I
T
A
L
A
PNGGTA
Y
L
S
S
KG
V
E
I
E
V
N
PN
S
N
F
T
F
F
E
L
PIKGDSTKLS
E
R
G
F
A
R
L
Y
D
K
I
N
GVR
15
Fugue
51.77
15%
36
- C2 -
-
5JBL
-
PCPP_BPT4
A:
[21-191]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
P
Q
L
L
I
E
T
W
G
Q
P
G
E
I
I
D
G
V
P
-------
M
L
E
S
G
L
K
P
G
L
Y
I
E
-
G
I
F
L
Q
A
E
VVNRNK-------
R
L
Y
P
K
R
--
I
L
E
K
A
----
V
K
D
Y
I
N
E
QVLTKQA
L
G
E
L
N
A
P
----
P
R
A
----
N
V
-
D
P
M
Q
A
A
I
I
I
-
E
D
M
-
W
W
K
G
-----
N
D
V
Y
G
R
A
R
V
I
E
G
D
H
G
P
--
G
D
--
K
L
A
A
-------
N
I
R
-----
A
GWI
P
G
V
A
S
R
G
L
G
S
L
T
D
T
N
E
G
Y
R
I
V
N
E
GFKLTVG
V
-
D
A
V
W
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
51.20
16%
106
- C5 -
-
2EHW
-
?
A:
[3-117]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
H
E
-
L
S
A
L
R
I
A
I
G
E
L
L
E
K
E
A
H
D
L
L
H
E
R
E
-------
E
L
A
-------------------------------
P
V
L
G
Q
R
--
P
E
L
K
R
----
L
A
E
-----------
A
K
T
L
P
A
L
----
E
E
A
----
L
R
-
E
A
L
L
---
H
L
-
E
E
R
-
A
A
Q
E
-----
P
E
E
P
Y
W
R
G
L
L
L
A
V
-
E
A
M
-
E
------
G
-------
R
L
K
-----
A
-----
L
R
A
E
A
E
A
L
Y
Q
D
L
D
A
L
H
G
R
L
H
R
-------
L
-
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
47.32
12%
83
* C5 *
-
5C3L
-
?
B:
[283-406]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
L
L
C
Q
D
V
E
N
F
Q
K
F
V
K
E
Q
K
Q
V
Q
E
E
I
S
-------
R
M
S
S
K
A
---
M
L
K
V
-
Q
E
D
I
K
A
L
-------------
K
Q
L
L
S
V
--
A
S
S
G
L
----
Q
R
N
-----------
A
L
A
I
D
K
L
----
K
I
E
----
T
A
-
E
E
L
K
N
A
E
I
A
-
L
R
T
-
Q
K
T
P
-----
P
G
L
Q
H
E
N
-----
T
-
A
P
--
A
D
--
Y
F
H
T
-------
L
V
Q
-----
Q
-----
F
E
V
Q
L
Q
Q
Y
R
Q
Q
I
E
E
L
E
N
H
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
43.56
16%
50
- C1 -
-
4QGL
-
MTND_BACAN
A:
[1-174]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA
A
-
M
A
Q
I
R
I
H
E
V
N
T
R
I
E
N
E
V
K
V
S
K
F
L
Q
E
E
G
V
L
Y
E
K
W
N
I
S
K
---
L
P
P
H
L
N
E
N
Y
S
L
T
-------------
D
E
N
K
A
E
--
I
L
A
V
F
----
S
K
E
-----------
I
A
D
V
S
A
R
R
GY
K
A
H
D
----
V
I
-
S
L
S
N
S
T
P
N
L
-
D
E
L
L
I
N
F
Q
-----
K
E
H
H
H
T
D
D
E
V
R
F
I
-
V
S
G
H
G
I
--
F
A
I
E
G
KDG
T
F
F
D
V
E
L
E
PG
D
L
-----
I
S
V
P
E
N
A
R
H
Y
F
T
L
Q
D
D
R
Q
V
V
A
-------
I
-
R
I
F
V
T
TEGWVPIY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.05
18%
-131
- C6 -
-
2K0M
-
?
A:
[4-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
P
---
I
E
I
A
-
G
H
E
F
A
R
K
-------------
A
D
A
L
A
F
--
M
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
43.01
15%
-7
- C5 -
-
2LRM
-
YMGD_ECOLI
A:
[7-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
L
P
S
E
T
Y
I
T
C
A
E
A
N
E
M
A
K
T
D
S
-------
A
Q
V
A
E
I
---
V
A
V
M
-
G
N
A
S
V
A
S
-------------
R
D
L
K
----
I
E
Q
S
P
----
E
L
S
-----------
A
K
V
V
E
K
L
----
N
Q
V
C
A
K
D
P
Q
-
M
L
L
I
T
A
I
D
D
-
T
M
R
-
A
I
G
K
-----
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
40.20
11%
131
- C5 -
-
5T58
-
?
N:
[5-216]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------VDKLDITQKQLRFLHKQFKEIID
E
-
K
V
R
T
A
L
P
E
S
S
E
D
D
Q
V
S
Q
E
I
Q
L
Q
L
D
-------
Q
F
L
M
D
V
---
L
E
M
A
-
G
E
S
M
N
V
V
DAGKGTTVKSVIQ
E
V
Q
K
E
Y
--
T
E
P
F
D
----
V
E
L
-----------
N
E
K
V
R
K
L
----
Y
Q
E
----
W
E
-
D
E
T
V
K
V
S
K
L
-
R
R
E
-
A
P
Q
V
-----
A
V
S
E
Y
T
K
Q
E
N
Q
L
L
-
E
E
--
I
D
--
S
L
I
A
-------
K
M
D
-----
S
-----
S
K
T
Q
E
Y
W
N
Q
V
A
N
Q
Y
G
S
I
L
T
S
L
-------
K
-
E
I
N
D
K
IPTHESKQKRLRLLLDLIEKEVAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
39.38
27%
54
- C6 -
-
3HE4
-
?
B:
[1-44]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
V
-------------
K
E
L
K
N
Y
--
I
Q
-
E
L
----
E
E
R
-----------
N
A
E
L
K
N
L
----
K
E
H
----
L
K
-
F
A
K
A
E
L
E
F
E
-
L
A
A
-
H
K
F
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
38.44
15%
-21
- C6 -
-
1T0F
3
TNSA_ECOLX
A:
[58-138]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
H
L
L
S
D
-------------
L
E
L
A
V
F
--
L
S
L
-------
E
W
-----------
E
S
S
V
L
D
I
----
R
E
Q
----
F
P
L
L
P
S
-
D
T
R
Q
I
A
I
D
S
-
G
I
K
H
PVIRG
V
D
Q
V
M
S
T
D
F
L
V
D
C
-
K
D
--
G
P
FE
Q
F
A
I
-------
Q
V
K
-----
P
-----
A
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
37.74
40%
-53
- C6 -
-
4WS9
-
METK_SULSO
A:
[40-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
Y
I
A
D
-------
A
V
A
-----
E
-----
E
A
S
R
K
L
S
L
Y
Y
L
K
K
Y
G
V
I
L
H
H
N
-------
L
-
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.53
21%
-137
- C4 -
-
3DNX
-
?
A:
[40-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
R
V
D
V
M
G
L
G
-
P
K
--
G
E
--
I
W
V
I
-------
E
C
K
-----
S
-----
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
34.83
22%
46
- C6 -
-
1M0D
-
ENDO_BPT7
D:
[6-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
-------------
L
E
D
K
V
S
--
K
Q
L
-------
E
S
-----------
K
G
--
I
K
F
----
E
Y
E
----
E
W
K
V
P
Y
V
I
P
-----------
A
-----
S
N
H
T
Y
T
P
D
F
L
L
P
N
-----
G
----
I
F
V
-------
E
T
K
-----
G
-----
L
W
---
E
S
D
D
R
K
K
H
L
L
I
R
E
Q
H
P
-------
E
L
D
I
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
31.91
20%
34
* C6 *
-
3CAE
-
ENDO_BPT7
J:
[18-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------------
L
E
D
K
V
S
--
K
Q
L
-------
E
S
-----------
K
G
--
I
K
F
----
E
Y
E
----
E
W
K
V
P
Y
S
N
N
Q
Q
--------
N
Y
-----
S
S
H
T
Y
T
P
D
F
L
L
P
N
-----
G
----
I
F
V
-------
E
T
K
-----
G
-----
L
W
---
E
S
D
D
R
K
K
H
L
L
I
R
E
Q
H
P
-------
E
L
D
I
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.91
17%
-156
- C4 -
-
5GKE
1
NUCS_THEKO
B:
[161-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
I
V
A
V
L
G
R
D
-
S
D
--
G
N
--
I
V
V
L
-------
E
L
K
-----
R
-----
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
28.91
20%
-146
- C4 -
-
2VLD
-
NUCS_PYRAB
A:
[155-179]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
H
G
I
V
D
V
M
G
V
D
-
K
D
--
G
N
--
I
V
V
L
-------
E
L
K
-----
R
-----
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.12
17%
-161
* C4 *
-
5GKG
1
NUCS_THEKO
B:
[161-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
G
I
V
A
V
L
G
R
D
-
S
D
--
G
N
--
I
V
V
L
-------
E
L
K
-----
R
-----
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.44
19%
-205
- C4 -
-
4QBN
-
?
B:
[33-53]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
D
L
L
V
I
L
-
P
R
--
G
V
--
I
W
F
V
-------
E
V
K
-----
K
-----
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
25.55
17%
-97
- C6 -
-
5DJQ
-
?
N:
[1-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
V
D
N
V
V
L
-
A
G
V
-
V
T
V
G
-----
L
M
V
A
F
L
A
G
F
G
Y
F
I
-
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------