@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TY09: (2017-12-13 )
MKNQEIVVILGNADKRDWHFILVQLFFQLLGRRDRLFKTYFRFNKIQDNPFRIMNLMLLIFIVLWLGYINHDFLISSFSSLGIFTFFYYQNIPMKYLLKRMFLIGCGLLVAFVLGILSTYVLWLEPFAVALVAFSSRFVLRLFHISKPGGLFFAMLSAMGTSMQLPIAQLPIVSLYFFMGVVFALIAAVITKLLDSRPEQTIEKATLKERFHEEPLVIIDSVFYSAALFLSVYVSHGLNLHNPYWLTLSCASILLAENLDAMKHRQVQYLIGSMGGLCVSAFLSFVPFTQLQTIFLITFLYGIAQFLVARNYAVANIFLNPMALMLSTLIRGAYLISLIEYRFLGIVIGSFIGLGVAWVMTVGLQHYLTVVRQKLE
Atome Classification :
(16 SA)
-------------------------.........10---..-------.--......20...------------.....30...---.....40.------......-.50........60--------------..---------...-------...70.----------.......80........90----------....--...----..100.......110--....----....120.......130...----------------....140---------.........------------------150..-------.....160.......170---......----..------180.......190..------....----...200.......210...--....220----------......------.--..---230....-.----..240---........250.....-------..260.......-----------270.......--280----........290.---------......300----.........310.......--------320.......330.......340-------.......-.350...--.-...360-----........370....----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------MKNQ
E
I
V
V
I
L----GN-------A--DK
R
D
W
H
F
I
L
V
Q
------------
L
F
F
Q
L
LGR
R
D
---
R
L
F
K
T
Y
F
R
------
F
NKIQD-
N
P
F
R
I
M
N
L
M
L
L
I
F
--------------
I
V
---------
L
W
L
-------
G
YI
N
H
D
----------
F
L
I
S
S
F
S
SL
G
I
F
T
F
F
Y
Y
Q-----------NI
P
M
--
K
Y
L
----
L
K
R
M
F
L
I
G
C
G
L
L
V
A
---
F
V
L
G
----
I
L
S
T
Y
V
L
W
L
E
P
F
A
V
A
L
V
A
F
S
----------------
S
R
F
V
L
-----------
R
L
F
HISKP
G
------------------
G
L
F
F
A
-------
M
L
S
AMGTSMQLP
I
A
QL
P
----
I
V
S
L
Y
F
----
F
M
------
G
V
V
F
A
L
I
A
A
V
I
--
T
K
------
L
L
DS----R
P
E
Q
T
I
E
K
A
T
L
K
E
R
FHEEP--
L
V
I
I
D
------------
S
V
F
Y
S
A
------
A
--
L
F
---
L
S
V
Y
V
S
H-G----LNLH----N
P
Y
W
L
T
L
S
C
A
S
I
L
L
A
E
-------
N
L
D
A
M
K
H
R
Q
V
Q
Y
-----------
L
I
GSM
G
G
L
C
V
--
S
A
-----
F
L
S
FV
P
F
T
Q
L
Q
T
---------
I
F
L
I
T
F
L
------
Y
G
I
A
Q
F
L
V
A
RN
Y
A
V
A
N
I
F
L--------
N
P
M
A
L
M
L
S
T
L
I
R
G
A
Y
L
I
S
L
I
E
Y
--------
R
F
L
G
I
V
I
-
G
S
F
I
G
L
G
--
V
-
A
W
V
M
T
------
V
G
L
Q
H
Y
L
T
V
V
R
Q
KLE----------------------------------------------
19
Fugue
63.96
16%
-123
- C5 -
-
5T6O
-
PHAC_CUPNH
A:
[1-389]
-----------------------------
S
A
F
E
V
G
----
R
N
-------
V
--
A
V
T
E
G
A
V
V
F
E
N
------------
E
Y
F
Q
L
L
Q
Y
K
P
---
L
T
-------------
D
K
V
H
A
-
R
P
L
L
M
V
P
P
C
I
N
K
Y
--------------
Y
I
---------
L
D
L
-------
Q
P
E
S
S
------------
L
V
R
H
V
V
E
Q
G
H
T
V
F
L
V
S
W
-----------
R
N
P
D
--
A
S
M
AGST
W
D
D
Y
I
E
H
A
A
I
R
A
I
E
---
V
A
R
D
----
I
S
G
Q
D
K
I
N
V
L
G
F
A
V
G
G
T
I
V
S
----------------
T
A
L
A
V
-----------
L
A
A
R
G
E
H
P
-------------------
A
A
S
V
T
-------
L
L
T
T
L
-----
L
D
F
A
D
T
G
----
I
L
D
V
F
V
----
D
E
------
G
H
V
Q
G
A
P
C
A
L
L
R
G
L
E
------
L
A
N
T
FSFL
R
P
N
D
L
V
W
N
Y
V
V
D
N
Y
L
K
G
N
T
--
P
V
P
F
D
------------
L
L
F
W
N
G
D
A
T
N
L
P
G
--
P
W
---
Y
C
W
Y
L
R
H
-
T
-------
Y
----
L
Q
N
E
L
K
V
P
G
K
L
T
V
C
G
V
-------
P
V
D
L
A
S
I
D
V
P
T
Y
-----------
I
Y
G
S
R
E
D
--------------
H
I
V
P
W
T
A
A
Y
A
---------
S
T
A
L
--
L
------
A
N
K
L
R
F
V
L
G
A
S
G
H
I
A
G
V
I
N
--------
P
P
A
K
N
K
R
S
H
W
T
N
D
A
L
P
E
S
P
Q
Q
W
--------
L
A
G
A
I
E
H
H
G
S
W
W
P
D
W
--
T
-
A
W
L
A
G
Q
A
GAKR
A
A
P
A
N
Y
G
N
A
R
Y
R
A
I
E
PAPGRYVKAKA-----------------------------------
18
Fugue
62.34
18%
-62
- C8 -
-
4MR0
1
PFBA_STRR6
A:
[114-571]
TALSVKDYGAVGDGIHDD
R
Q
A
I
Q
D
A
I
D
A
A
A
Q
G
L
G
G
----
G
N
-------
V
--
Y
F
P
E
G
T
Y
L
V
K
E
------------
I
V
F
L
K
S
H
T
H
L
---
E
L
N
E
K
A
T
I
------
L
N
G
I
N
I
-
K
N
H
P
S
I
V
F
M
T
G
L
F
T
D
DGA
Q
V
E
W
G
P
TED
I
S
---------
Y
S
G
-------
G
T
I
D
M
N
GALNEEGTKA
K
N
L
P
L
I
N
S
S
G
A
F
A
I
G
N
S
N
-----------
N
V
T
I
--
K
N
V
----
T
F
K
D
S
Y
Q
G
H
A
I
Q
I
A
GSK
N
V
L
V
----
D
N
S
R
F
L
G
Q
A
L
P
K
T
M
K
D
G
Q
I
I
----------------
S
K
E
S
I
-----------
Q
I
E
P
L
T
R
K
G
FPYALNDDG
K
K
S
E
NVTIQ
N
S
Y
F
G
K
S
DKSGE
L
V
T
A
I
G
T
H
Y
Q
T
L
S
T
Q
N
P
SN
I
K
I
L
N
N
H
F
DNMM
Y
A
------
G
V
R
F
T
G
F
T
D
V
L
--
I
K
--------
G
N
----
R
F
D
K
K
V
K
G
E
S
V
H
Y
R
E
S
G
A
A
--
L
V
N
A
Y
------------
S
Y
K
N
T
K
------
D
--
L
L
DLN
K
Q
V
V
I
A
E
N
I
----
F
N
I
A
----
D
P
K
T
K
A
I
R
V
A
K
--------------
D
S
A
E
Y
-----------------
L
G
K
V
S
D
I
T
V
T
K
N
V
-----
I
N
N
N
S
K
E
T
E
Q
P
N
---------
I
E
L
L
R
V
S
------
D
N
---
L
V
V
S
E
N
----
S
I
F
G
--------
G
K
E
G
I
V
I
E
D
S
-
K
G
K
I
T
V
L
N
N
Q
F
--------
Y
N
L
S
G
K
Y
-
I
S
F
I
K
S
N
--
A
-
N
G
K
E
P
------
V
I
S
D
G
N
F
N
I
V
T
E
N
G
L
Y
K
I
V
T
N
NLSDKN----------------------------------
11
Fugue
61.60
18%
-49
* C8 *
-
5KE1
-
ICSA_SHIFL
A:
[2-323]
------------------------F
G
N
N
V
K
V
E
A
I
I
----
N
N
-------
W
--
A
Q
K
D
Y
K
L
L
S
A
D
------------
K
G
I
T
G
F
S
V
S
N
---
I
S
I
I
N
P
L
L
------
T
T
G
A
I
D
Y
T
K
S
Y
I
S
D
Q
N
K
L
I
Y
--------------
G
L
---------
S
W
N
DTDGDSH
G
E
F
N
L
K
----------
E
N
A
E
L
T
V
S
T
I
L
A
D
N
L
S
H
H
-----------
N
I
N
---
S
W
D
----
G
K
S
L
T
K
S
G
E
G
---
T
---
L
I
L
A
----
E
K
N
T
Y
S
G
F
T
N
I
N
A
G
I
L
K
M
G
T
----------------
V
E
A
M
T
-----------
R
T
A
G
V
I
V
N
K
------------------
G
---
A
-------
T
L
N
F
S
G
M
N
Q
T
V
N
T
L
L
N
S
----
G
T
V
L
I
N
----
N
I
------
N
A
P
F
-------------------------
L
P
D
P
V
I
V
T
G
N
M
T
L
E
--
K
N
G
--
H
V
I
L
N
------------
N
---
S
S
------
S
--
N
V
---
G
Q
T
Y
V
Q
K
-
G
-----
N
W
H
----
G
K
G
-
G
I
L
S
L
G
A
V
L
G
N
D
-------
N
S
K
T
D
R
L
E
I
A
G
H
-----------
A
S
G
-----------------
I
T
Y
V
A
V
T
N
E
G
G
---------
S
G
D
K
T
-
L
------
E
G
--
V
Q
I
I
S
T
D
S
S
D
K
N
A
F
I
--------
Q
----------
K
G
R
I
V
A
G
S
Y
D
Y
--------
R
L
K
Q
----
G
T
V
S
G
L
N
--
T
N
K
W
Y
L
T
------
S
Q
M
D
---------------------------------------------------------
12
Fugue
59.20
15%
-62
- C4 -
-
1JVN
-
HIS5_YEAST
A:
[1-555]
-------------------------
G
S
H
M
P
V
V
H
V
I
D
VES
G
N
L
Q
S
L
T
N
A
I
--
E
H
L
G
Y
E
V
Q
L
V
K
SPKDFNISGTS
R
L
I
L
P
G
V
G
N
Y
G
---
H
F
V
D
N
L
F
N
R
GF
E
K
P
I
R
E
Y
I
E
-
S
G
K
P
I
M
G
I
V
G
L
Q
A
--------------
L
F
AGSVESPKS
T
G
L
-------
N
Y
I
D
F
K
----------
L
S
R
F
D
D
S
E
K
P
V
P
E
I
G
W
N
S
C
IPSENLFFGL
D
P
Y
K
--
R
Y
Y
----
F
V
H
S
F
A
A
I
L
N
S
E
K
K
---
K
N
L
E
N
D
G
W
K
I
A
K
A
K
Y
G
S
E
E
F
I
A
A
V
N
K
------------------
N
N
I
F
A
-----------
T
Q
F
H
P
E
K
S
G
------------------
K
A
G
L
N
-------
V
I
E
N
F
L
K
Q
Q
S
P
P
I
P
N
Y
S
----
A
E
E
K
E
L
----
L
M
NDYSNY
G
L
T
R
R
I
I
A
C
L
D
--
V
R
T
N
DQGD
L
V
V
T
----
K
G
D
L
G
K
P
V
Q
L
A
Q
K
Y
Y
Q
Q
G
A
D
E
V
T
F
L
N
ITDCPLKDT
P
M
L
E
V
L
K
Q
A
------
A
K
T
V
F
---
V
P
L
T
V
G
G
-
G
----
I
K
D
I
VDVD
G
T
K
I
P
A
L
E
V
A
S
L
Y
F
R
S
GAD
K
V
S
I
G
T
D
A
V
Y
A
A
E
K
Y
Y
E
L
GNRGDGTS
P
I
E
T
I
S
K
A
Y
G
A
--
Q
A
-----
V
V
I
S
V
D
P
K
R
V
Y
V
NSQADTK
N
K
V
F
E
T
E
Y
P
GPNGEK
Y
C
W
Y
Q
C
T
I
K
G
G
R
E
S
R
D
L
G
V
--------
W
E
L
T
R
A
C
E
A
L
G
A
G
E
I
L
L
N
C
I
D
K
DGSNSGYD
L
E
L
I
E
H
V
-
K
D
A
V
K
I
P
--
V
-
I
A
S
S
G
------
A
G
V
P
E
H
F
E
E
A
F
L
K
T
R
AD
A
C
L
G
A
G
M
F
H
R
GEFT
V
N
D
V
K
E
Y
L
L
E
H
G
L
K
V
R
M
D
E
E----------
14
Fugue
49.79
15%
-81
* C6 *
-
5LJ3
-
CLF1_YEAST
S:
[37-556]
---------------------------------
I
L
----
D
L
-------
E
--
E
L
R
E
Y
Q
R
R
K
R
T
------------
E
Y
E
G
Y
L
K
R
N
R
LDM
G
Q
W
I
R
Y
A
Q
------
F
E
I
E
Q
H
-
D
M
R
R
A
R
S
I
F
E
R
A
L
--------------
L
V
DSSFIP---
L
W
I
-------
R
Y
I
D
A
E
----------
L
K
V
K
C
I
N
H
A
R
N
L
M
N
R
A
I
S
-----------
T
L
P
R
VD
K
L
W
----
Y
K
Y
L
I
V
E
E
S
L
N
N
V
E
---
I
V
R
S
----
L
Y
T
K
W
C
S
-
L
E
P
G
V
N
A
W
N
S
F
V
DFEIRQKNWNGVREIY
S
K
Y
V
M
AHPQMQTWLKW
V
R
F
E
N
R
H
G
N
------------------
T
E
F
T
R
-------
S
V
Y
S
L
A
I
D
T
V
A
N
L
Q
N
L
Q
----
I
W
S
D
M
E
----
V
A
------
K
L
V
N
S
F
A
H
W
E
A
--
A
Q
------
Q
E
Y
E
----
R
S
S
A
L
Y
Q
V
A
I
E
K
N
Q
L
L
K
A
G
--
L
L
D
F
E
------------
K
Q
F
N
S
I
------
E
--
E
T
---
I
S
Y
K
R
K
M
-
D
YETI
L
S
N
Y
----
D
T
W
W
L
Y
L
D
L
I
S
E
F
P
K
Q
-------
I
M
Q
T
F
E
K
A
I
V
D
S
-----------
K
-
N
V
Q
W
K
R
Y
I
--
Y
L
-----
W
M
R
Y
I
C
Y
V
E
L
E
S
---------
L
L
E
E
E
L
F
------
Q
R
L
I
D
D
I
F
S
K
I
W
L
M
Y
A
K
F
L
IRDVPKAR
K
I
L
G
K
A
I
G
T
F
K
G
Y
I
E
L
E
V
K
L
E
F
--------
D
R
V
R
K
I
Y
-
E
K
F
I
E
F
Q
DL
Q
-
I
W
S
Q
Y
------
G
E
L
E
E
N
G
D
W
D
R
V
R
G
I
YTIALDEKEAKIVLLQKYITFEARKLYRRYLELNPQSWIEFAMYQT
16
Fugue
48.54
16%
-98
- C6 -
-
4R8G
-
E:
[5-332]
------------------------------
R
R
Q
S
L
----
A
T
-------
K
--
I
Q
A
A
W
R
G
F
H
W
R
------------
Q
K
F
L
R
V
K
R
S
A
---
I
C
I
Q
S
W
W
R
------
G
T
L
G
R
R
-
K
A
A
K
-
R
K
W
A
A
Q
T
I
--------------
R
R
---------
L
I
R
-------
G
F
I
L
R
H
----------------
S
P
R
C
P
E
N
A
F
F
L
D
-----------
H
V
R
A
--
S
F
L
----
L
N
L
R
--------
R
Q
---
L
P
R
N
----
V
L
D
T
S
--
W
P
T
P
------
P
P
A
----------------
L
R
E
A
S
-----------
E
L
L
R
E
L
C
M
K
------------------
N
M
V
W
K
-------
Y
C
R
S
I
S
P
E
W
K
Q
Q
L
Q
Q
K
A
----
V
A
S
E
I
F
-----
K
------
G
K
K
D
N
Y
P
Q
S
V
P
--
R
L
------
F
I
S
T
----
R
L
G
T
E
E
I
S
P
R
V
L
Q
S
L
G
S
E
P
--
I
--------------------
Q
Y
------
A
--
V
P
---
V
V
K
Y
D
R
K
-
G
----
Y
K
-
P
----
R
P
R
Q
L
L
L
T
P
S
A
V
V
I
V
E
---------
D
A
K
V
K
Q
R
I
D
Y
-------------
A
N
L
T
G
I
S
V
--
S
S
LSDSL
F
V
L
H
V
Q
K
Q
K
G
D
V
---------
V
L
Q
S
D
H
V
------
I
E
T
L
T
K
T
A
L
S
A
D
R
V
N
N
I
N
I
--------
N
Q
G
S
I
T
F
A
G
G
P
G
R
D
G
I
I
D
F
T
S
-----------------------
G
--
S
-
E
L
L
I
T
------
K
A
K
N
G
H
L
A
V
V
A
P
R
L
-----------------------------------------------
3
HHSearch
31.20
4%
-217
- C7 -
-
5MQI
-
TIM_HUMAN
A:
[205-240]
-------------------------------
L
F
L
A
----
S
S
-------
S
--
A
E
E
Q
W
S
L
H
V
L
E
------------
I
V
S
L
M
F
R
D
Q
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
29.33
20%
-
- C7 -
-
3J47
-
S:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
----
P
Q
Q
V
F
D
E
R
I
K
F
A
N
Q
L
H
D
E
Y
--
L
V
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
23.04
21%
-295
- C7 -
-
4B19
-
?
A:
[11-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
S
-
G
C
A
I
A
F
F
--
S
-
Y
W
L
---------------------------------------------------------------------
1
PsiBlast_PDB
22.93
33%
-101
- C7 -
-
5I1M
-
VPH1_YEAST
V:
[777-821]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
F
A
L
T
C
A
V
L
V
L
M
E
-------
G
T
S
A
M
L
H
S
L
R
L
H
-----------
W
V
E
S
M
S
K
F
F
V
--
G
E
-----
G
L
P
Y
E
P
F
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
22.70
22%
-98
* C7 *
-
4TXD
-
?
A:
[21-49]
-----------------------------
K
R
D
V
L
A
----
E
L
-------
G
LG
D
L
R
P
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
21.56
11%
120
- C2 -
-
5LV6
-
B:
[14-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
G
M
V
-
G
A
L
L
-------------------------------------------------------------------------------
2
HHSearch
19.21
18%
52
- C7 -
-
2ACM
-
MUC1_HUMAN
A:
[1064-1080]
--------------------------------------------------------------------------
D
Y
Y
Q
E
L
Q
R
D
I
---
S
E
M
F
L
Q
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
14.00
18%
-
- C1 -
-
1IIJ
-
A:
[10-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
A
T
V
V
G
V
L
L
--
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
10.76
40%
90
- C3 -
-
2N37
-
?
A:
[43-57]
--------------------------
K
D
Q
N
C
K
V
I
L
----
T
N
-------
G
--
K
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
10.66
37%
134
- C7 -
-
2K2U
-
VP16_HHV1F
B:
[469-487]
---------------------------------------------------
D
M
A
D
F
E
F
--
E
Q
------------
M
F
T
D
A
L
G
I
D
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------