@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYE0: (2017-12-14 )
MLPFFIYWGVILACIAWLALSVYFSVFYLVRKENGNLWAFALFNVIAAIVLAITLAVYRTWGWGITQYSSLIYLILAIYGVVVLLQAILGREPKKAAA
Atome Classification :
(17 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..----------.-......10--......------..--------.20------.-......---.30...----...-.-.40.-----....-----...50........---60.--.......70.....-..---------..----80.--........90.......--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ML----------P-FFIYWGV---ILACIA------WL--------ALS------V-YFSVFY---LVRKEN----GNL-W-AFAL-----FNVI-----AAIVLAITLAVYR---TWG--WGITQYSS-LIYLI-LA---------IY----G-V--VVLLQAILGREPKKAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
61.05
16%
-
* C9 *
-
4YO5
-
?
A:
[399-529]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AALS
L
E
----------
P
-
E
A
L
Q
I
A
D
N
EG
T
E
A
A
L
S
------
W
L
Q
A
RPGIQS
D
R
S
------
N
-
W
L
L
R
L
L
M
A
R
V
A
E
Q
T
G
----
K
N
D
-
L
-
A
L
H
L
-----
L
A
E
L
-----
D
E
R
A
T
R
L
T
L
S
Q
W
E
---
P
E
L
--
V
F
E
V
K
A
R
R
-
L
K
L
L
R
M
K
S
A
K
TESDRVR
L
Q
----
P
-
D
M
-
E
H
L
L
A
G
L
I
A
I
D
A
A
R
A
A
V
LCNS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
58.09
16%
-204
- C9 -
-
1BL8
-
KCSA_STRLI
A:
[1-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
H
W
R
A
---
A
G
A
A
T
V
------
L
L
--------
V
I
V
------
L
-
L
A
G
S
Y
L
---
A
V
L
A
E
R
----
G
A
P
---
G
A
Q
L
-----
I
T
Y
P
-----
R
A
L
W
W
S
V
E
T
A
T
T
V
---
G
Y
G
DL
Y
P
V
T
L
W
G
R
-
C
V
A
V
V
-
V
M
---------
V
A
----
G
-
I
T
S
F
G
L
V
T
A
A
L
A
T
W
F
V
G
R
E
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
57.59
24%
-131
- C7 -
-
5GJV
6
?
F:
[29-1074]
FPSAVTIKSWVDKMQEDLVTLAKTASGVHQLVDIYEKYQDLYTVEPNNARQLVEIAARDIEKLLSNRSKALVRLALEAEKVQAAHQWREDFASVVYYNAKDQRIKPVFIDDANFRRQVSYQHAAVHIPTDIYEGSTIVLNELNWTSALDDVFKKNREEDPSLLWQVFGSATGLARYYPASPWVKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRIN
T
Q
----------
E
-
Y
L
D
V
L
G
R
---
P
M
V
L
A
G
------
D
K
--------
A
K
Q
------
V
-
Q
W
T
N
V
Y
---
L
D
A
L
E
L
----
G
-------------------------
L
V
I
T
G
T
L
P
V
F
N
---
I
T
G
--
Q
F
E
N
K
T
N
L
-
K
N
Q
L
I
-
L
G
---------
V
M
----
G
-
V
--
D
V
S
L
E
D
I
K
R
L
T
P
R
F
T
L
C
PNGYYFAIDPNGYVLLHPNLQPKPIGVGIPTINLRKRRPNVQNPKSQEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFLAPRDYCSDLKPSDNNTEFLLNFNEFIDRKTTDLINRVLLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYESGIMVSKAVEIYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCEPGAASKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLIFIMVESKGTCPCDTRLLIQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDC
14
Fugue
52.09
18%
-169
- C9 -
-
5J5L
1
?
A:
[1-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
----------
A
-
A
T
I
L
S
D
L
---
S
T
I
K
T
D
------
I
N
--------
T
L
T
------
Q
-
H
F
N
E
F
-----
T
G
D
L
L
----
Q
A
L
-
A
-
A
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A
V
-----
E
Q
Q
L
-----
E
S
D
I
D
Q
A
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A
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A
K
A
---
T
S
A
--
L
S
A
A
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S
T
S
-
V
T
N
A
L
-
L
G
---------
L
K
----
P
D
I
--
V
T
S
L
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A
I
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A
K
K
P
Q
V
D
S
A
GV
G
S
L
V
L
S
D
L
N
A
L
Q
S
K
T
D
A
L
S
G
A
L
Q
D
I
AT
A
T
D
K
D
T
I
A
S
G
T
Q
D
I
D
A
A
F
S
S
A
I
A
V
F
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
44.98
22%
-38
- C8 -
-
2JOZ
-
YXEF_BACSU
A:
[1-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
M
V
S
G
C
Q
Q
Q
KE
E
-
T
P
F
Y
Y
G
T
---
W
D
E
G
R
A
P
G
P
TDG
V
K
--------
S
A
T
------
V
-
T
F
T
E
D
E
---
V
V
E
T
E
V
M
EGR
G
E
V
Q
L
-
P
F
M
A
-----
Y
K
V
I
SQSTD
G
S
I
E
I
Q
Y
L
G
P
Y
Y
P
L
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S
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--
R
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--
E
N
G
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-
L
I
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E
Q
-
N
G
---------
Q
R
----
K
-
T
--
M
T
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K
T
G
R
E
E
K
D
E
K
S
K
S
LEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
43.70
17%
-105
- C9 -
-
4Y0C
-
CLPT2_ARATH
A:
[3-168]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLPTANKKPKWS
W
R
A
I
K
S
F
A
M
G
E
L
E
A
R
K
L
KYPNTG
T
E
A
L
----------
L
M
G
I
L
I
E
G
T
---
S
F
T
S
K
F
------
L
R
--------
A
N
K
------
I
M
L
Y
K
V
R
E
---
E
T
V
K
L
L
----
G
K
A
-
D
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Y
F
F
S
PEHPP
L
T
E
D
-----
A
Q
R
A
L
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A
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D
Q
N
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---
K
A
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-----
G
I
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M
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A
H
I
L
-
L
G
---------
I
W
S
EVE
S
-
P
--
G
H
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I
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A
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L
G
F
T
D
E
K
S
K
E
L
E
S
F
A
S
ESGFLDE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
43.19
18%
-304
- C2 -
-
5C2N
-
?
N:
[8-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
S
P
D
----
G
T
L
-
Y
-
G
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
40.50
45%
-497
- C9 -
-
3KL4
-
DAP2_YEAST
B:
[17-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
L
V
-
L
L
---------
I
W
----
G
-
T
--
V
L
L
L
K
S
I
P
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
39.38
19%
-36
- C9 -
-
1UCR
-
DSVD_DESVH
A:
[1-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
E
A
---
K
Q
K
V
V
D
------
F
L
--------
N
S
K
S
G
S
K
S
K
F
-
Y
F
N
D
F
T
---
D
L
F
P
D
M
----
K
-----
Q
R
E
V
-----
K
K
I
L
-----
T
A
L
V
N
D
E
V
L
E
Y
W
S
---
S
G
S
----
T
T
M
Y
G
L
-------------------------------------
K
G
A
G
K
Q
A
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
33.45
12%
-125
- C9 -
-
2MH3
-
HES1_HUMAN
A:
[26-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
----------
P
----------------------------------------------
K
T
A
S
---
E
H
R
K
S
S
----
K
P
I
-
M
-
E
K
R
R
-----
R
A
R
I
-----
N
E
S
L
S
Q
L
K
T
L
I
L
D
---
A
L
K
--
K
D
S
S
R
H
S
K
-
L
-----------------
E
----
K
-
A
--
D
I
L
E
M
T
V
K
H
L
R
N
L
Q
R
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
30.83
44%
118
- C4 -
-
5KZO
-
A:
[49-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
Q
H
----
G
Q
L
-
W
-
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.30
31%
113
- C6 -
-
2L8V
-
PYR1_THEEB
A:
[81-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Y
K
H
L
L
G
R
A
P
Y
D
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.80
50%
165
- C3 -
-
1AXH
-
TO1A_HADVE
A:
[25-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
N
E
N
----
G
N
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.58
27%
-
- C1 -
-
2BDS
-
BDS1_ANESU
A:
[8-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
P
G
R
----
G
D
L
-
W
-
I
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
27.81
11%
-266
- C5 -
-
4QND
1
SWEET_VIBSN
A:
[75-83]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
W
V
-----
G
N
C
L
-----
G
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
26.19
32%
-79
- C9 -
-
5H2F
-
PSBL_THEEB
L:
[15-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
Y
L
G
L
---
L
L
I
L
V
------------------
L
A
------
L
-
L
F
S
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
19.75
26%
-62
- C9 -
-
4RVY
-
PSBL_THEEB
L:
[15-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
Y
L
G
L
---
L
L
I
L
V
L
------------------
A
------
L
-
L
F
S
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------