@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYI0: (2017-12-14 )
MIEVTDTAVTSFDDAAEGIEQSRTDGKGLNESHAKGCKN
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....---.-..20...-..------...30........-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
I
E
VTDTAVTS
F
D
D
A
A
---
E
-
G
I
E
QSRT-DG------KGL
N
E
S
H
AKGCKN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
72.15
27%
96
- C3 -
-
5FTW
4
CHER_BACSU
A:
[2-256]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
T
Y
S
V
F
T
T
K
W
K
Q
L
TGVDLTLYKE
A
Q
M
K
R
R
L
T
S
L
Y
E
K
K
G
F
Q
S
F
K
D
F
A
---
A
-
A
L
E
K
----
D
Q
------
A
L
L
N
E
T
L
D
R
M
T
I
N
V
S
E
F
YRN
Y
K
R
W
E
V
L
E
TAILPLIKTSR
P
L
K
I
W
SAACSTG
E
E
P
Y
T
L
A
M
L
L
D
Q
QKGLP
G
Y
Q
I
L
A
T
D
ID
E
K
A
L
E
K
A
K
K
GVYQERSLQEVP
L
S
V
K
D
R
Y
FTQNANR
S
Y
E
V
K
T
E
I
K
K
N
I
T
F
K
K
H
N
LLA
D
R
Y
E
Q
DFD
L
I
V
C
R
NVFIYFT
E
S
A
K
E
E
L
Y
L
K
M
A
H
S
LKKN
G
V
L
F
V
G
ST
E
Q
I
F
NPEKFG
L
V
P
ADTF
F
Y
Q
K
R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
68.62
25%
100
- C3 -
-
2N3Z
-
?
A:
[1-99]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
G
R
L
V
V
V
V
TS
E
Q
L
K
E
E
V
R
K
K
F
P
Q
V
E
V
R
L
V
T
T
E
E
D
A
K
---
Q
-
V
I
K
E
I
Q
K
-
K
G
VQ
K
V
V
L
V
G
V
S
E
K
L
L
Q
K
I
K
Q
E
A
N
V
Q
V
Y
R
V
TS
N
D
E
L
E
Q
V
V
K
D
V
K
GSGL
E
H
H
H
H
H
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
65.66
17%
-158
- C3 -
-
3HL1
1
?
A:
[3-317]
--------------------------------------------------------------------------------------------------------------------------------P
P
V
W
T
L
P
R
L
Y
Q
H
F
Q
G
A
I
D
L
E
L
W
T
I
P
Y
Y
L
T
V
L
Y
S
IKDPTT
V
P
Y
R
L
I
Q
A
A
V
Y
Q
E
M
L
H
A
Q
L
V
S
N
I
A
N
A
Y
G
Y
S
P
T
L
S
A
P
E
Y
V
GTAVPHIDFDLDTPNPTSIFTPYSA
E
L
G
P
LD
L
T
R
V
N
T
M
C
L
I
E
YPEWRTQREPDLADDVTDYGS
I
G
E
F
Y
D
A
L
R
V
G
M
E
Q
L
RGHVRGNQKQMDENSP
P
L
T
V
T
E
S
G
D
A
G
F
L
Q
A
L
---
T
-
L
V
D
I
I
V
D
-
Q
G
------
E
G
Q
A
W
P
H
F
Q
R
F
D
F
I
R
R
MPNW
P
G
V
Y
T
G
V
TDPPAGS
P
G
A
E
A
Q
A
R
L
I
A
D
F
A
G
F
L
D
I
L
N
G
M
F
S
GGGAPPAFGVQM
A
K
L
G
G
D
I
L
S
C
W
K
L
GAVPRYS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
62.40
28%
162
- C3 -
-
2KCL
-
?
A:
[1-99]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDPED
P
F
T
R
Y
A
L
A
Q
E
H
L
K
H
DN
A
S
R
A
L
A
L
F
E
E
L
V
E
T
DPDY
V
G
T
Y
Y
H
L
G
K
L
Y
E
R
L
D
R
T
D
D
A
I
D
T
Y
A
---
Q
-
G
I
E
V
A
R
E
-
E
G
------
T
Q
K
D
L
S
E
L
Q
D
A
K
L
K
A
E
G
L
EHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
59.22
34%
179
- C3 -
-
3W3W
-
IMB3_YEAST
A:
[3-1077]
ALP
E
E
V
N
R
T
L
L
Q
I
V
Q
A
FASD
N
Q
I
R
S
V
A
E
K
A
L
S
EEWITENN
I
E
Y
L
L
T
F
L
A
E
Q
A
A
FSQD
T
T
V
A
A
L
S
A
V
L
F
R
K
L
A
L
K
A
PITHIR
K
E
V
L
A
Q
I
R
S
S
L
L
K
G
F
L
SERA
D
S
I
R
H
K
L
S
D
A
I
A
E
C
VQDDLPAW
P
E
L
L
Q
A
L
I
E
S
L
K
SGN
P
N
F
R
E
S
S
F
R
I
L
T
T
V
P
Y
L
I
T
A
VD
I
N
S
I
L
P
I
F
Q
S
G
F
T
DAS
D
N
V
K
I
A
A
V
T
A
F
V
G
Y
F
K
Q
LPKSEWSKLGIL
L
P
S
L
L
N
S
L
P
R
F
L
D
D
GK
D
D
A
L
A
S
V
F
E
S
L
I
E
L
V
E
L
APKLFKDM
F
D
Q
I
I
Q
F
T
D
M
V
I
K
NKDLEP
P
A
R
T
T
A
L
E
L
L
T
V
F
S
E
N
A
P
Q
M
C
K
S
N
Q
N
Y
G
Q
T
L
V
M
V
T
L
I
M
M
T
E
V
S
I
D
D
-
D
D
A
A
---
E
-
W
I
E
S
D
D
T
D
D
E
------
E
E
V
T
Y
D
H
A
R
Q
A
L
D
R
V
A
L
K
LGGEYL
A
A
P
L
F
Q
Y
L
Q
Q
M
I
T
STE
W
R
E
R
F
A
A
M
M
A
L
S
S
A
AEGCA
D
V
L
I
G
E
I
P
K
I
L
D
M
V
I
P
L
I
NDPH
P
R
V
Q
Y
G
C
C
N
V
L
G
Q
I
S
T
D
F
S
P
F
I
Q
R
T
A
H
D
R
I
L
P
A
L
I
S
K
L
TSECT
S
R
V
Q
T
H
A
A
A
A
L
V
N
F
S
E
FASKDILEPY
L
D
S
L
L
T
N
L
L
V
L
L
Q
SNK
L
Y
V
Q
E
Q
A
L
T
T
I
A
F
I
A
E
A
A
KNKFIKYYDTL
M
P
L
L
L
N
V
L
K
VN
S
V
L
K
G
K
C
M
E
C
A
T
L
I
G
F
A
V
G
K
E
K
F
H
E
H
S
Q
E
L
I
S
I
L
V
A
L
Q
N
SD
A
L
R
S
Y
L
E
Q
S
W
S
R
I
C
R
I
L
GDDFVPLLPIVI
P
P
L
L
I
T
A
K
ATQDVGLIEEEEAANFQQYPD
W
D
V
V
Q
V
QG
K
H
I
A
I
H
T
S
V
L
D
D
K
V
S
A
M
E
L
L
Q
S
Y
A
T
L
L
RGQFAVY
V
K
E
V
M
E
EI
A
L
P
S
L
D
FYLH
D
G
V
R
A
A
G
A
T
L
I
P
I
L
L
S
C
L
L
A
AE
E
L
V
L
L
W
H
K
A
S
S
K
L
I
G
G
L
M
S
EPM
P
E
I
T
Q
V
Y
H
N
S
L
V
N
G
I
K
V
M
GDNCLS
E
D
Q
L
A
A
F
T
K
G
V
S
A
N
L
T
D
T
Y
E
R
M
Q
DRDEYNED
F
T
D
E
D
L
L
D
E
I
N
K
S
I
A
A
V
L
K
T
T
N
GHY
L
K
N
L
E
N
I
W
P
M
I
N
T
F
L
LE
P
I
L
V
I
F
A
L
V
V
I
G
D
L
I
Q
YEQTASMKNAF
I
P
K
V
T
E
C
L
ISPD
A
R
I
R
Q
A
A
S
Y
I
I
G
V
C
A
Q
YAPSTYADVCIPT
L
D
T
L
V
Q
I
V
DGSKLEEN
R
S
S
T
E
N
A
S
A
A
I
A
K
I
L
Y
A
Y
NSNIPD
T
Y
T
A
N
W
F
K
T
LPTITD
K
E
A
A
S
F
N
Y
Q
F
L
S
QVCAQSN
I
S
A
V
V
D
S
V
I
Q
A
L
N
E
RSLT
V
I
S
S
V
K
K
L
L
G
F
L
P
S
S
D
A
M
A
I
F
N
RYP
A
D
I
M
E
K
V
H
K
W
F
22
Fugue
56.09
29%
43
* C2 *
-
1EWS
-
RK1_RABIT
A:
[1-32]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
P
C
S
C
K
K
Y
C
D
P
W
---
E
-
V
I
D
G
S
C
-----------
G
L
F
N
S
K
Y
I
C
C
R
E
K----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
52.56
23%
86
- C3 -
-
3C0F
-
Y1514_ARCFU
B:
[3-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IMDEIVNL
Q
K
E
V
S
L
E
E
A
E
R
Y
A
N
I
A
SYG
D
-
G
I
L
L
S
V
H
-
D
S
------
T
G
Y
R
A
P
E
V
Y
C
C
G
E
KPWEVYACNRGANLISVNQFEFYFRIEVEG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
51.23
29%
82
- C3 -
-
1TRL
-
THER_BACTH
A:
[276-299]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
T
S
N
F
S
Q
L
R
---
A
-
A
A
V
Q
S
A
T
-
D
L
------
Y
G
S
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
51.07
44%
-34
- C3 -
-
3GZF
-
R1AB_FIPV
A:
[6-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
F
V
G
S
F
E
S
A
A
---
M
-
G
T
F
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
50.51
17%
482
* C3 *
-
3HE5
-
?
A:
[0-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
N
L
V
A
Q
L
E
N
E
V
A
S
L
E
N
E
N
---
E
-
T
L
K
K
K
N
L
-
H
K
------
K
D
L
I
A
Y
L
E
K
E
I
A
N
L
R
K
K
IE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
50.30
44%
-8
- C3 -
-
3GZF
-
R1AB_FIPV
D:
[6-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
F
V
G
S
F
E
S
A
A
---
M
-
G
T
F
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
49.82
18%
-
- C3 -
-
4YVQ
-
HEM11_ARATH
A:
[439-527]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
T
V
P
T
-
I
K
K
L
R
A
Y
A
---
E
-
R
I
R
V
A
E
L
-
E
K
------
C
M
S
K
M
G
D
D
I
N
K
K
T
T
R
A
V
D
D
L
S
R
G
I
V
N
R
F
L
H
G
P
M
Q
H
L
R
CRT
L
S
E
T
L
E
N
M
H
A
L
N
R
M
Y
GLEK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
44.71
33%
62
- C4 -
-
4B2K
-
DODEC_HALS3
A:
[5-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
L
L
T
G
T
S
E
E
S
F
T
A
A
A
---
D
D
A
I
D
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
43.93
33%
68
- C4 -
-
4B2J
-
DODEC_HALS3
A:
[5-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
L
L
T
G
T
S
E
E
S
F
T
A
A
A
---
D
D
A
I
D
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.89
36%
-
- C3 -
-
3KPE
-
?
B:
[10-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
S
Q
V
N
---
E
-
K
I
N
Q
S
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.48
25%
-213
- C3 -
-
1X0G
-
?
C:
[1-16]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
L
T
P
A
A
I
Q
E
L
E
R
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.87
31%
216
- C1 -
-
1WHU
-
PNPT1_MOUSE
A:
[357-369]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
R
C
-
D
G
------
R
D
S
G
P
S
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
35.50
20%
-0
* C4 *
-
2VXA
-
DODEC_HALHL
E:
[9-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
L
T
G
S
S
P
N
G
I
E
E
A
V
---
N
N
A
I
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
35.07
16%
32
- C2 -
-
1ZUV
-
AMP_AMACA
A:
[1-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
E
C
V
R
G
R
C
P
---
S
-
G
M
C
C
S
Q
----------
W
G
Y
C
G
K
G
P
K
Y
C
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
31.98
35%
111
- C4 -
-
2CC6
-
DODEC_HALS3
A:
[5-21]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
L
L
T
G
T
S
E
E
S
F
T
A
A
A
---
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------